Wall clock time and date at job start Tue Mar 31 2020 04:15:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35941 * 117.00317 * 2 1 4 4 C 1.38210 * 120.00507 * 0.27988 * 3 2 1 5 5 C 1.39747 * 119.85137 * 180.27327 * 4 3 2 6 6 C 1.47392 * 120.06067 * 179.72028 * 5 4 3 7 7 N 1.29800 * 120.00062 * 179.72431 * 6 5 4 8 8 N 1.40095 * 120.00436 * 185.26115 * 7 6 5 9 9 C 1.47156 * 120.98006 * 355.14825 * 8 7 6 10 10 C 1.53301 * 108.38433 * 129.44369 * 9 8 7 11 11 O 1.42960 * 109.26413 * 52.27588 * 10 9 8 12 12 C 1.42962 * 114.16926 * 297.50353 * 11 10 9 13 13 C 1.47157 * 120.98707 * 175.12649 * 8 7 6 14 14 C 1.39806 * 119.87428 * 359.44253 * 5 4 3 15 15 C 1.37791 * 120.01389 * 0.27978 * 14 5 4 16 16 C 1.38954 * 120.14123 * 359.97438 * 15 14 5 17 17 O 1.35713 * 119.92962 * 179.97438 * 16 15 14 18 18 C 1.34800 * 117.00362 * 5.66872 * 17 16 15 19 19 H 1.07996 * 119.99603 * 354.93242 * 18 17 16 20 20 C 1.38589 * 119.99757 * 174.92498 * 18 17 16 21 21 N 1.31593 * 120.00012 * 179.97438 * 20 18 17 22 22 Si 1.86808 * 120.00383 * 0.02562 * 20 18 17 23 23 H 1.48505 * 109.47044 * 89.99888 * 22 20 18 24 24 H 1.48494 * 109.47034 * 209.99618 * 22 20 18 25 25 H 1.48495 * 109.46841 * 329.99767 * 22 20 18 26 26 H 1.09004 * 109.47185 * 60.00008 * 1 2 3 27 27 H 1.09005 * 109.47652 * 179.97438 * 1 2 3 28 28 H 1.09000 * 109.47345 * 300.00093 * 1 2 3 29 29 H 1.07997 * 120.07517 * 0.02562 * 4 3 2 30 30 H 1.07998 * 120.00058 * 359.72394 * 6 5 4 31 31 H 1.09003 * 109.67983 * 9.72115 * 9 8 7 32 32 H 1.09004 * 109.68077 * 249.16362 * 9 8 7 33 33 H 1.09000 * 109.50847 * 172.22897 * 10 9 8 34 34 H 1.09000 * 109.50836 * 292.32736 * 10 9 8 35 35 H 1.09001 * 109.47136 * 302.57037 * 12 11 10 36 36 H 1.08998 * 109.55064 * 182.47402 * 12 11 10 37 37 H 1.09004 * 109.67403 * 350.27743 * 13 8 7 38 38 H 1.08997 * 109.68275 * 110.83029 * 13 8 7 39 39 H 1.07996 * 119.99556 * 180.29504 * 14 5 4 40 40 H 1.07993 * 119.92851 * 180.02562 * 15 14 5 41 41 H 0.97000 * 120.00738 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0462 1.2112 0.0000 4 6 1.2937 2.3704 0.0058 5 6 1.9315 3.6139 0.0000 6 6 1.1334 4.8530 0.0000 7 7 1.7270 6.0073 0.0000 8 7 0.9731 7.1828 0.1113 9 6 -0.4979 7.1411 0.1227 10 6 -0.9951 7.9492 1.3268 11 8 -0.3971 9.2475 1.3030 12 6 1.0278 9.2378 1.4198 13 6 1.6285 8.4958 0.2205 14 6 3.3280 3.6802 0.0002 15 6 4.0730 2.5211 0.0001 16 6 3.4395 1.2844 0.0006 17 8 4.1775 0.1455 0.0000 18 6 5.5134 0.2818 0.1177 19 1 5.9572 1.2664 0.1245 20 6 6.3173 -0.8415 0.2301 21 7 7.6215 -0.7085 0.3445 22 14 5.5497 -2.5445 0.2179 23 1 5.4745 -3.0435 -1.1788 24 1 6.3821 -3.4685 1.0294 25 1 4.1825 -2.4753 0.7932 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3634 -1.0277 -0.0005 28 1 -0.3634 0.5138 0.8900 29 1 0.2151 2.3155 0.0108 30 1 0.0547 4.8006 0.0000 31 1 -0.8351 6.1081 0.2093 32 1 -0.8847 7.5783 -0.7978 33 1 -2.0796 8.0468 1.2769 34 1 -0.7177 7.4374 2.2483 35 1 1.3133 8.7312 2.3417 36 1 1.3992 10.2624 1.4373 37 1 2.6994 8.3599 0.3719 38 1 1.4558 9.0693 -0.6901 39 1 3.8229 4.6401 0.0005 40 1 5.1517 2.5739 0.0006 41 1 8.1843 -1.4946 0.4229 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000254317607.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:15:25 Heat of formation + Delta-G solvation = -16.177184 kcal Electronic energy + Delta-G solvation = -24367.002463 eV Core-core repulsion = 20636.348383 eV Total energy + Delta-G solvation = -3730.654080 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 306.141 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -39.78818 -39.46870 -37.75007 -37.06607 -35.73979 -32.81606 -32.33797 -31.62546 -29.79448 -29.35490 -27.17800 -26.25698 -25.18786 -24.44190 -22.90813 -21.72253 -20.99114 -19.35183 -18.07478 -17.70634 -17.53965 -16.54136 -16.20955 -15.67347 -15.45610 -15.32037 -15.27475 -15.10337 -14.48423 -14.39528 -13.92938 -13.77589 -13.69312 -13.25005 -12.69513 -12.35858 -12.30478 -12.18866 -12.17015 -11.76506 -11.57001 -11.44913 -11.14346 -10.94896 -10.85903 -10.78019 -10.58147 -10.23666 -10.11431 -9.77775 -9.45499 -8.92446 -8.18835 -7.81966 -6.84006 -6.46316 -4.08221 1.46000 2.09732 2.53421 2.96154 3.24911 3.27480 3.45686 3.50597 3.83691 4.24144 4.46907 4.47618 4.57357 4.68314 4.76166 4.81546 4.95557 4.97773 5.06484 5.20988 5.25037 5.29743 5.34809 5.42609 5.46409 5.48111 5.63511 5.66935 5.74402 5.81083 6.03754 6.16329 6.21600 6.45982 6.77465 6.78652 6.95202 7.08641 7.21649 7.42636 7.61037 7.89644 8.06708 8.42786 8.88259 9.50425 10.60198 Molecular weight = 306.14amu Principal moments of inertia in cm(-1) A = 0.022888 B = 0.002943 C = 0.002652 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1223.061076 B = 9512.894435 C =10553.950121 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.308 6.308 3 C 0.054 3.946 4 C -0.143 4.143 5 C -0.110 4.110 6 C 0.089 3.911 7 N -0.238 5.238 8 N -0.556 5.556 9 C 0.064 3.936 10 C 0.051 3.949 11 O -0.383 6.383 12 C 0.044 3.956 13 C 0.130 3.870 14 C -0.058 4.058 15 C -0.206 4.206 16 C 0.151 3.849 17 O -0.197 6.197 18 C -0.386 4.386 19 H 0.109 0.891 20 C 0.065 3.935 21 N -0.873 5.873 22 Si 0.904 3.096 23 H -0.273 1.273 24 H -0.283 1.283 25 H -0.254 1.254 26 H 0.048 0.952 27 H 0.091 0.909 28 H 0.048 0.952 29 H 0.123 0.877 30 H 0.104 0.896 31 H 0.086 0.914 32 H 0.065 0.935 33 H 0.101 0.899 34 H 0.054 0.946 35 H 0.055 0.945 36 H 0.105 0.895 37 H 0.093 0.907 38 H 0.062 0.938 39 H 0.121 0.879 40 H 0.143 0.857 41 H 0.281 0.719 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.529 13.412 0.913 21.305 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.222 6.222 3 C 0.009 3.991 4 C -0.164 4.164 5 C -0.113 4.113 6 C -0.121 4.121 7 N -0.042 5.042 8 N -0.373 5.373 9 C -0.062 4.062 10 C -0.028 4.028 11 O -0.301 6.301 12 C -0.034 4.034 13 C 0.006 3.994 14 C -0.079 4.079 15 C -0.225 4.225 16 C 0.096 3.904 17 O -0.101 6.101 18 C -0.462 4.462 19 H 0.127 0.873 20 C -0.139 4.139 21 N -0.510 5.510 22 Si 0.729 3.271 23 H -0.198 1.198 24 H -0.208 1.208 25 H -0.177 1.177 26 H 0.066 0.934 27 H 0.109 0.891 28 H 0.066 0.934 29 H 0.140 0.860 30 H 0.121 0.879 31 H 0.104 0.896 32 H 0.083 0.917 33 H 0.119 0.881 34 H 0.072 0.928 35 H 0.074 0.926 36 H 0.123 0.877 37 H 0.111 0.889 38 H 0.080 0.920 39 H 0.139 0.861 40 H 0.160 0.840 41 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -15.575 13.664 0.855 20.737 hybrid contribution -1.089 -1.010 -0.038 1.485 sum -16.664 12.655 0.817 20.940 Atomic orbital electron populations 1.22909 0.80131 1.03007 1.00496 1.86183 1.19672 1.26452 1.89937 1.17961 0.89236 0.84414 1.07502 1.20661 0.98428 0.90646 1.06685 1.17578 0.92412 0.89239 1.12110 1.23924 0.96845 0.90439 1.00887 1.74490 1.23764 0.93199 1.12747 1.50237 1.01105 1.02109 1.83840 1.22387 0.83373 1.01473 0.98964 1.22945 0.98235 0.84304 0.97269 1.87928 1.20014 1.27709 1.94475 1.23107 0.81198 1.01493 0.97626 1.21827 0.98467 0.81295 0.97786 1.20914 0.92326 0.97729 0.96920 1.21023 1.01242 0.90530 1.09711 1.18557 0.87699 0.87109 0.97016 1.83620 1.20292 1.27320 1.78839 1.20845 0.77237 0.97097 1.50993 0.87348 1.24473 0.94540 0.99565 0.95319 1.69662 1.03076 1.31749 1.46546 0.86184 0.80355 0.81690 0.78895 1.19790 1.20831 1.17749 0.93380 0.89074 0.93378 0.85967 0.87919 0.89574 0.91702 0.88103 0.92786 0.92627 0.87739 0.88881 0.92008 0.86054 0.84000 0.90899 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.39 9.81 101.05 0.99 1.38 16 2 O -0.31 -6.01 10.28 -34.17 -0.35 -6.37 16 3 C 0.05 1.09 6.70 -39.12 -0.26 0.83 16 4 C -0.14 -2.38 8.77 -39.03 -0.34 -2.72 16 5 C -0.11 -1.86 5.87 -105.02 -0.62 -2.48 16 6 C 0.09 1.29 10.26 -14.69 -0.15 1.14 16 7 N -0.24 -3.59 10.65 32.14 0.34 -3.24 16 8 N -0.56 -6.98 4.03 -113.05 -0.46 -7.44 16 9 C 0.06 0.64 6.59 -3.53 -0.02 0.62 16 10 C 0.05 0.45 6.98 37.31 0.26 0.71 16 11 O -0.38 -3.98 10.74 -35.23 -0.38 -4.36 16 12 C 0.04 0.39 6.98 37.31 0.26 0.65 16 13 C 0.13 1.33 7.01 -3.53 -0.02 1.31 16 14 C -0.06 -1.08 9.57 -39.16 -0.37 -1.46 16 15 C -0.21 -4.39 9.15 -39.48 -0.36 -4.75 16 16 C 0.15 3.50 6.67 -38.84 -0.26 3.24 16 17 O -0.20 -5.25 8.36 -14.37 -0.12 -5.37 16 18 C -0.39 -10.78 9.94 30.86 0.31 -10.47 16 19 H 0.11 3.05 5.42 -52.49 -0.28 2.77 16 20 C 0.07 1.82 5.49 -17.52 -0.10 1.72 16 21 N -0.87 -24.94 13.96 55.48 0.77 -24.16 16 22 Si 0.90 21.75 28.62 -169.99 -4.86 16.88 16 23 H -0.27 -6.45 7.11 56.52 0.40 -6.04 16 24 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 25 H -0.25 -6.23 7.11 56.52 0.40 -5.82 16 26 H 0.05 0.54 7.67 -51.93 -0.40 0.14 16 27 H 0.09 0.99 8.14 -51.93 -0.42 0.56 16 28 H 0.05 0.54 7.65 -51.93 -0.40 0.15 16 29 H 0.12 1.61 6.28 -52.49 -0.33 1.28 16 30 H 0.10 1.23 5.65 -52.49 -0.30 0.94 16 31 H 0.09 0.79 5.51 -51.93 -0.29 0.50 16 32 H 0.06 0.63 8.14 -51.93 -0.42 0.20 16 33 H 0.10 0.66 8.14 -51.93 -0.42 0.24 16 34 H 0.05 0.50 8.14 -51.93 -0.42 0.07 16 35 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 36 H 0.10 0.68 8.14 -51.93 -0.42 0.25 16 37 H 0.09 0.93 8.13 -51.93 -0.42 0.51 16 38 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 39 H 0.12 2.12 7.54 -52.49 -0.40 1.72 16 40 H 0.14 3.14 5.62 -52.49 -0.29 2.84 16 41 H 0.28 7.40 8.31 -40.82 -0.34 7.06 16 LS Contribution 342.53 15.07 5.16 5.16 Total: -1.00 -31.88 342.53 -5.78 -37.66 By element: Atomic # 1 Polarization: 6.72 SS G_CDS: -5.20 Total: 1.52 kcal Atomic # 6 Polarization: -9.60 SS G_CDS: -0.69 Total: -10.29 kcal Atomic # 7 Polarization: -35.51 SS G_CDS: 0.66 Total: -34.84 kcal Atomic # 8 Polarization: -15.24 SS G_CDS: -0.85 Total: -16.09 kcal Atomic # 14 Polarization: 21.75 SS G_CDS: -4.86 Total: 16.88 kcal Total LS contribution 5.16 Total: 5.16 kcal Total: -31.88 -5.78 -37.66 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000254317607.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.486 kcal (2) G-P(sol) polarization free energy of solvation -31.881 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.395 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.782 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.663 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.177 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds