Wall clock time and date at job start Tue Mar 31 2020 04:20:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42896 * 114.00081 * 2 1 4 4 C 1.53004 * 109.46845 * 179.97438 * 3 2 1 5 5 N 1.46494 * 109.47185 * 65.00063 * 4 3 2 6 6 C 1.34774 * 119.99808 * 179.97438 * 5 4 3 7 7 O 1.21278 * 120.00225 * 0.02562 * 6 5 4 8 8 C 1.50702 * 119.99758 * 180.02562 * 6 5 4 9 9 N 1.46505 * 109.47174 * 179.97438 * 8 6 5 10 10 C 1.34771 * 120.00394 * 179.97438 * 9 8 6 11 11 O 1.21592 * 119.99579 * 0.02562 * 10 9 8 12 12 C 1.47642 * 120.00628 * 180.02562 * 10 9 8 13 13 C 1.40014 * 119.89046 * 0.25312 * 12 10 9 14 14 C 1.36315 * 120.10857 * 180.25454 * 13 12 10 15 15 C 1.40893 * 119.88481 * 359.47208 * 14 13 12 16 16 C 1.41114 * 120.09748 * 180.29801 * 15 14 13 17 17 H 1.08000 * 120.00330 * 335.06249 * 16 15 14 18 18 C 1.40223 * 119.99644 * 155.06801 * 16 15 14 19 19 N 1.30656 * 120.00207 * 342.19907 * 18 16 15 20 20 Si 1.86803 * 120.00199 * 162.20506 * 18 16 15 21 21 H 1.48503 * 109.47047 * 94.65856 * 20 18 16 22 22 H 1.48504 * 109.47089 * 214.65560 * 20 18 16 23 23 H 1.48498 * 109.46765 * 334.65988 * 20 18 16 24 24 C 1.40884 * 119.79739 * 0.28068 * 15 14 13 25 25 C 1.36315 * 119.88972 * 359.97438 * 24 15 14 26 26 H 1.08997 * 109.47583 * 300.00182 * 1 2 3 27 27 H 1.09004 * 109.46654 * 59.99747 * 1 2 3 28 28 H 1.09008 * 109.47138 * 179.97438 * 1 2 3 29 29 H 1.09001 * 109.47123 * 60.00360 * 3 2 1 30 30 H 1.08990 * 109.47286 * 300.00050 * 3 2 1 31 31 H 1.09000 * 109.47162 * 305.00130 * 4 3 2 32 32 H 1.08997 * 109.46947 * 185.00446 * 4 3 2 33 33 H 0.97000 * 120.00328 * 0.02562 * 5 4 3 34 34 H 1.09000 * 109.47174 * 60.00012 * 8 6 5 35 35 H 1.08997 * 109.47381 * 300.00054 * 8 6 5 36 36 H 0.97008 * 119.99606 * 0.02562 * 9 8 6 37 37 H 1.08009 * 119.95054 * 0.02770 * 13 12 10 38 38 H 1.07993 * 120.05993 * 179.74600 * 14 13 12 39 39 H 0.96994 * 120.00294 * 179.97438 * 19 18 16 40 40 H 1.08003 * 120.05494 * 180.02562 * 24 15 14 41 41 H 1.07998 * 119.94660 * 179.97438 * 25 24 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5355 1.1845 0.0006 5 7 3.9767 0.5638 -1.2508 6 6 5.2895 0.3558 -1.4736 7 8 6.1056 0.6820 -0.6379 8 6 5.7434 -0.2822 -2.7613 9 7 7.2039 -0.3969 -2.7611 10 6 7.8372 -0.9419 -3.8186 11 8 7.1964 -1.3380 -4.7730 12 6 9.3091 -1.0581 -3.8183 13 6 10.0444 -0.6062 -2.7158 14 6 11.4039 -0.7066 -2.7130 15 6 12.0680 -1.2764 -3.8172 16 6 13.4747 -1.3883 -3.8164 17 1 14.0695 -0.7174 -3.2142 18 6 14.1004 -2.3705 -4.5975 19 7 13.4115 -3.3870 -5.0438 20 14 15.9188 -2.2257 -4.9998 21 1 16.7080 -3.0034 -4.0109 22 1 16.1683 -2.7603 -6.3626 23 1 16.3256 -0.7986 -4.9455 24 6 11.3234 -1.7344 -4.9220 25 6 9.9647 -1.6250 -4.9178 26 1 -0.3634 0.5138 0.8899 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3634 -1.0277 -0.0005 29 1 1.6887 1.8463 0.8900 30 1 1.6887 1.8463 -0.8899 31 1 3.8508 0.5683 0.8427 32 1 3.9785 2.1763 0.0903 33 1 3.3240 0.3032 -1.9194 34 1 5.4278 0.3342 -3.6031 35 1 5.3007 -1.2741 -2.8511 36 1 7.7151 -0.0813 -1.9995 37 1 9.5340 -0.1740 -1.8677 38 1 11.9706 -0.3540 -1.8640 39 1 13.8442 -4.0662 -5.5844 40 1 11.8282 -2.1723 -5.7705 41 1 9.3930 -1.9755 -5.7644 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000270217536.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:20:25 Heat of formation + Delta-G solvation = -106.279062 kcal Electronic energy + Delta-G solvation = -23466.141919 eV Core-core repulsion = 19731.580728 eV Total energy + Delta-G solvation = -3734.561191 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 306.141 amu Computer time = 1.57 seconds Orbital eigenvalues (eV) -40.11083 -38.87794 -38.29430 -37.02749 -35.05516 -33.92713 -33.81229 -30.74197 -30.07948 -29.50449 -27.67398 -26.62917 -25.44785 -23.00670 -21.89125 -20.99827 -20.57240 -19.68509 -17.79252 -17.48081 -17.17626 -16.85587 -16.19677 -15.91597 -15.74777 -15.37999 -15.05986 -14.83487 -14.30356 -14.01825 -13.86433 -13.34150 -13.21338 -13.10303 -12.72356 -12.58744 -12.25616 -12.22588 -12.15560 -11.81685 -11.69549 -11.33380 -11.18605 -10.95181 -10.59005 -10.29304 -10.07246 -9.99480 -9.49422 -9.37607 -9.28631 -9.02388 -8.66559 -7.64566 -7.51923 -6.98279 -4.55815 2.26698 2.45154 2.79500 2.93401 2.98176 3.04213 3.08899 3.23110 3.77592 3.89305 3.89529 4.39754 4.57353 4.60677 4.67412 4.79348 4.87550 4.92420 5.17064 5.25920 5.39616 5.43031 5.47942 5.63078 6.03021 6.09660 6.15970 6.34008 6.59233 6.81809 6.84677 6.90839 7.11201 7.14761 7.24142 7.49092 7.67605 7.82469 7.92359 7.97882 8.10414 8.27666 8.47378 8.67494 8.80173 9.06106 9.93764 Molecular weight = 306.14amu Principal moments of inertia in cm(-1) A = 0.043209 B = 0.002099 C = 0.002035 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 647.862985 B =13336.821158 C =13758.831567 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.389 6.389 3 C 0.048 3.952 4 C 0.122 3.878 5 N -0.725 5.725 6 C 0.511 3.489 7 O -0.535 6.535 8 C 0.106 3.894 9 N -0.732 5.732 10 C 0.574 3.426 11 O -0.576 6.576 12 C -0.283 4.283 13 C -0.048 4.048 14 C -0.234 4.234 15 C 0.128 3.872 16 C -0.443 4.443 17 H 0.085 0.915 18 C 0.074 3.926 19 N -0.769 5.769 20 Si 0.913 3.087 21 H -0.268 1.268 22 H -0.273 1.273 23 H -0.257 1.257 24 C -0.183 4.183 25 C -0.035 4.035 26 H 0.042 0.958 27 H 0.042 0.958 28 H 0.088 0.912 29 H 0.067 0.933 30 H 0.058 0.942 31 H 0.078 0.922 32 H 0.085 0.915 33 H 0.406 0.594 34 H 0.093 0.907 35 H 0.094 0.906 36 H 0.408 0.592 37 H 0.092 0.908 38 H 0.098 0.902 39 H 0.287 0.713 40 H 0.121 0.879 41 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.071 7.134 7.104 21.565 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.308 6.308 3 C -0.029 4.029 4 C -0.002 4.002 5 N -0.379 5.379 6 C 0.297 3.703 7 O -0.411 6.411 8 C -0.022 4.022 9 N -0.389 5.389 10 C 0.370 3.630 11 O -0.458 6.458 12 C -0.287 4.287 13 C -0.067 4.067 14 C -0.254 4.254 15 C 0.125 3.875 16 C -0.470 4.470 17 H 0.103 0.897 18 C -0.148 4.148 19 N -0.392 5.392 20 Si 0.736 3.264 21 H -0.193 1.193 22 H -0.197 1.197 23 H -0.181 1.181 24 C -0.203 4.203 25 C -0.054 4.054 26 H 0.060 0.940 27 H 0.061 0.939 28 H 0.106 0.894 29 H 0.085 0.915 30 H 0.076 0.924 31 H 0.096 0.904 32 H 0.103 0.897 33 H 0.241 0.759 34 H 0.111 0.889 35 H 0.112 0.888 36 H 0.247 0.753 37 H 0.110 0.890 38 H 0.116 0.884 39 H 0.098 0.902 40 H 0.138 0.862 41 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -18.811 6.704 6.934 21.140 hybrid contribution 0.314 0.195 -0.013 0.370 sum -18.497 6.899 6.921 20.920 Atomic orbital electron populations 1.22777 0.80635 1.03103 1.00060 1.87951 1.20021 1.27363 1.95446 1.22828 0.93077 0.85520 1.01502 1.21385 0.91818 0.99388 0.87588 1.45799 1.07517 1.63744 1.20815 1.20764 0.82325 0.78367 0.88868 1.90708 1.52725 1.51007 1.46666 1.20879 0.84677 1.01926 0.94719 1.45702 1.04823 1.65793 1.22630 1.18602 0.88505 0.75329 0.80604 1.90635 1.68457 1.51332 1.35342 1.18836 0.89612 1.19890 1.00409 1.20435 0.94448 0.96521 0.95263 1.20675 0.93359 1.12084 0.99234 1.17803 0.93295 0.86878 0.89520 1.19834 0.92075 1.13203 1.21900 0.89736 1.26110 1.01437 0.93813 0.93423 1.69755 1.38896 1.06559 1.24037 0.86216 0.81271 0.80170 0.78720 1.19278 1.19734 1.18108 1.20997 0.92378 1.07188 0.99693 1.20465 0.94443 0.94880 0.95634 0.93959 0.93898 0.89387 0.91457 0.92352 0.90375 0.89711 0.75942 0.88942 0.88844 0.75303 0.88977 0.88424 0.90199 0.86162 0.88129 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.15 11.01 101.05 1.11 1.26 16 2 O -0.39 -2.98 10.65 -35.23 -0.38 -3.35 16 3 C 0.05 0.27 6.07 37.16 0.23 0.50 16 4 C 0.12 0.98 6.06 -4.04 -0.02 0.95 16 5 N -0.73 -6.68 5.50 -60.30 -0.33 -7.01 16 6 C 0.51 6.58 7.90 -10.99 -0.09 6.50 16 7 O -0.53 -8.75 15.67 5.56 0.09 -8.66 16 8 C 0.11 1.47 6.15 -5.19 -0.03 1.44 16 9 N -0.73 -13.14 5.48 -62.49 -0.34 -13.48 16 10 C 0.57 12.58 7.76 -12.42 -0.10 12.48 16 11 O -0.58 -13.76 16.32 5.28 0.09 -13.67 16 12 C -0.28 -6.70 5.89 -104.73 -0.62 -7.32 16 13 C -0.05 -1.07 9.47 -39.61 -0.38 -1.45 16 14 C -0.23 -5.62 9.73 -39.27 -0.38 -6.01 16 15 C 0.13 3.34 5.57 -106.80 -0.60 2.75 16 16 C -0.44 -11.21 9.04 -37.75 -0.34 -11.55 16 17 H 0.08 2.03 7.91 -52.49 -0.42 1.61 16 18 C 0.07 1.76 5.13 -17.31 -0.09 1.67 16 19 N -0.77 -19.09 10.97 55.56 0.61 -18.48 16 20 Si 0.91 17.64 29.60 -169.99 -5.03 12.61 16 21 H -0.27 -5.10 7.11 56.52 0.40 -4.70 16 22 H -0.27 -5.16 7.11 56.52 0.40 -4.76 16 23 H -0.26 -4.94 7.11 56.52 0.40 -4.54 16 24 C -0.18 -4.77 8.63 -39.27 -0.34 -5.11 16 25 C -0.03 -0.87 9.52 -39.61 -0.38 -1.25 16 26 H 0.04 0.16 8.14 -51.93 -0.42 -0.26 16 27 H 0.04 0.16 8.14 -51.93 -0.42 -0.26 16 28 H 0.09 0.37 8.14 -51.92 -0.42 -0.05 16 29 H 0.07 0.28 8.14 -51.93 -0.42 -0.14 16 30 H 0.06 0.26 8.14 -51.93 -0.42 -0.16 16 31 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 32 H 0.08 0.65 8.14 -51.93 -0.42 0.22 16 33 H 0.41 2.85 8.47 -40.82 -0.35 2.50 16 34 H 0.09 1.17 8.14 -51.93 -0.42 0.75 16 35 H 0.09 1.23 8.14 -51.93 -0.42 0.81 16 36 H 0.41 7.26 5.44 -40.82 -0.22 7.04 16 37 H 0.09 1.81 6.37 -52.48 -0.33 1.47 16 38 H 0.10 2.17 8.06 -52.49 -0.42 1.74 16 39 H 0.29 6.40 8.29 -40.82 -0.34 6.06 16 40 H 0.12 3.18 6.17 -52.48 -0.32 2.86 16 41 H 0.10 2.45 7.63 -52.49 -0.40 2.05 16 LS Contribution 355.08 15.07 5.35 5.35 Total: -1.00 -31.91 355.08 -7.37 -39.28 By element: Atomic # 1 Polarization: 17.95 SS G_CDS: -5.40 Total: 12.55 kcal Atomic # 6 Polarization: -3.11 SS G_CDS: -2.02 Total: -5.13 kcal Atomic # 7 Polarization: -38.91 SS G_CDS: -0.06 Total: -38.98 kcal Atomic # 8 Polarization: -25.48 SS G_CDS: -0.20 Total: -25.69 kcal Atomic # 14 Polarization: 17.64 SS G_CDS: -5.03 Total: 12.61 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -31.91 -7.37 -39.28 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000270217536.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -67.002 kcal (2) G-P(sol) polarization free energy of solvation -31.909 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.911 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.368 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.277 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.279 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.57 seconds