Wall clock time and date at job start Tue Mar 31 2020 04:03:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.46499 * 120.00345 * 2 1 4 4 C 1.50701 * 109.46992 * 274.99969 * 3 2 1 5 5 H 1.07998 * 120.00129 * 0.02562 * 4 3 2 6 6 C 1.37880 * 119.99861 * 179.97438 * 4 3 2 7 7 N 1.31512 * 119.99594 * 180.02562 * 6 4 3 8 8 Si 1.86797 * 119.99875 * 0.02562 * 6 4 3 9 9 H 1.48504 * 109.47061 * 90.00257 * 8 6 4 10 10 H 1.48497 * 109.46906 * 209.99430 * 8 6 4 11 11 H 1.48498 * 109.47403 * 329.99876 * 8 6 4 12 12 S 1.65605 * 119.99873 * 179.97438 * 2 1 3 13 13 O 1.42099 * 106.40321 * 23.53841 * 12 2 1 14 14 O 1.42097 * 106.40157 * 156.45960 * 12 2 1 15 15 N 1.65600 * 107.21849 * 270.00247 * 12 2 1 16 16 C 1.46497 * 120.00355 * 64.99677 * 15 12 2 17 17 C 1.52996 * 109.47132 * 165.00328 * 16 15 12 18 18 C 1.53001 * 109.47104 * 180.02562 * 17 16 15 19 19 H 1.08999 * 109.48384 * 304.97238 * 18 17 16 20 20 C 1.53096 * 109.48144 * 184.93898 * 18 17 16 21 21 C 1.53176 * 109.16487 * 182.40589 * 20 18 17 22 22 C 1.53179 * 109.03265 * 56.98390 * 21 20 18 23 23 C 1.53094 * 109.16576 * 303.01656 * 22 21 20 24 24 O 1.42904 * 109.41234 * 57.60879 * 23 22 21 25 25 H 1.08992 * 109.47370 * 89.99979 * 1 2 3 26 26 H 1.09001 * 109.47101 * 210.00402 * 1 2 3 27 27 H 1.09006 * 109.46957 * 329.99811 * 1 2 3 28 28 H 1.09002 * 109.47391 * 154.99959 * 3 2 1 29 29 H 1.09001 * 109.46813 * 35.00015 * 3 2 1 30 30 H 0.97002 * 119.99739 * 180.02562 * 7 6 4 31 31 H 0.97006 * 119.99802 * 245.00228 * 15 12 2 32 32 H 1.09004 * 109.46901 * 285.00323 * 16 15 12 33 33 H 1.08996 * 109.46732 * 45.00095 * 16 15 12 34 34 H 1.09004 * 109.47224 * 299.99798 * 17 16 15 35 35 H 1.08996 * 109.47502 * 60.00239 * 17 16 15 36 36 H 1.08997 * 109.52106 * 302.31653 * 20 18 17 37 37 H 1.09005 * 109.51738 * 62.50645 * 20 18 17 38 38 H 1.08997 * 109.54685 * 297.12265 * 21 20 18 39 39 H 1.08998 * 109.54371 * 176.84871 * 21 20 18 40 40 H 1.09004 * 109.52183 * 183.11692 * 22 21 20 41 41 H 1.08993 * 109.57657 * 62.95844 * 22 21 20 42 42 H 1.09002 * 109.48250 * 297.62976 * 23 22 21 43 43 H 1.08999 * 109.48255 * 177.59055 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1976 1.2687 0.0000 4 6 2.3415 1.7656 -1.4154 5 1 1.9283 1.1938 -2.2331 6 6 2.9999 2.9508 -1.6664 7 7 3.1251 3.3846 -2.9015 8 14 3.7141 3.9401 -0.2519 9 1 5.1114 3.5052 0.0004 10 1 3.7003 5.3834 -0.6009 11 1 2.8984 3.7181 0.9690 12 16 2.2930 -1.4342 0.0006 13 8 1.4113 -2.4068 -0.5433 14 8 3.5759 -1.1571 -0.5439 15 7 2.5380 -1.8581 1.5826 16 6 1.3946 -2.1768 2.4412 17 6 1.8875 -2.8833 3.7056 18 6 0.6933 -3.2167 4.6019 19 1 0.1264 -2.3082 4.8053 20 6 1.1948 -3.8115 5.9204 21 6 -0.0074 -4.1981 6.7873 22 6 -0.8917 -5.1760 6.0075 23 6 -1.3127 -4.5286 4.6857 24 8 -0.1476 -4.1654 3.9423 25 1 -0.3634 0.0000 -1.0276 26 1 -0.3633 -0.8900 0.5139 27 1 -0.3633 0.8900 0.5139 28 1 3.1859 1.1176 0.4343 29 1 1.6502 2.0042 0.5895 30 1 3.5886 4.2182 -3.0781 31 1 3.4388 -1.8952 1.9408 32 1 0.8794 -1.2565 2.7165 33 1 0.7080 -2.8308 1.9037 34 1 2.4027 -3.8035 3.4302 35 1 2.5742 -2.2293 4.2430 36 1 1.7957 -4.6974 5.7151 37 1 1.8004 -3.0732 6.4460 38 1 -0.5813 -3.3049 7.0340 39 1 0.3418 -4.6735 7.7039 40 1 -1.7784 -5.4136 6.5954 41 1 -0.3340 -6.0901 5.8040 42 1 -1.9059 -3.6372 4.8902 43 1 -1.9070 -5.2361 4.1074 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000330762166.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:03:11 Heat of formation + Delta-G solvation = -135.111958 kcal Electronic energy + Delta-G solvation = -24086.223506 eV Core-core repulsion = 20485.855978 eV Total energy + Delta-G solvation = -3600.367528 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 306.145 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -39.77490 -36.66012 -35.91220 -35.56963 -35.16012 -33.94374 -32.54323 -32.35722 -28.75677 -28.37496 -25.22325 -25.06232 -23.64953 -21.96587 -21.69195 -20.59391 -18.93238 -17.29535 -16.96005 -16.74753 -16.54308 -16.39637 -15.82451 -15.06690 -14.89509 -14.74107 -14.40896 -14.21137 -13.93479 -13.57714 -13.05757 -13.01134 -12.65503 -12.51873 -12.39009 -12.26224 -11.80895 -11.68449 -11.61094 -11.45370 -11.35437 -11.33550 -11.30309 -11.22201 -10.94775 -10.64145 -10.52386 -10.42730 -10.22442 -9.69956 -9.54332 -9.31704 -8.57557 -8.09700 -6.06092 -4.05148 1.19633 3.27886 3.32947 3.34513 3.45388 3.52976 4.12866 4.31300 4.39721 4.43388 4.49508 4.57613 4.82639 4.89945 4.94186 5.03126 5.08496 5.16693 5.23565 5.32125 5.37453 5.41824 5.44717 5.53892 5.57416 5.65229 5.68794 5.82334 5.86978 5.96764 6.00366 6.11363 6.27946 6.44128 6.71852 6.98057 7.03100 7.16609 7.45445 7.60204 8.51444 8.99284 9.52810 11.07649 Molecular weight = 306.14amu Principal moments of inertia in cm(-1) A = 0.024179 B = 0.003349 C = 0.003209 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1157.768590 B = 8358.499444 C = 8722.559387 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.106 3.894 2 N -0.992 5.992 3 C 0.228 3.772 4 C -0.531 4.531 5 H 0.078 0.922 6 C 0.072 3.928 7 N -0.896 5.896 8 Si 0.873 3.127 9 H -0.273 1.273 10 H -0.284 1.284 11 H -0.265 1.265 12 S 2.783 3.217 13 O -0.991 6.991 14 O -0.963 6.963 15 N -1.136 6.136 16 C 0.121 3.879 17 C -0.119 4.119 18 C 0.091 3.909 19 H 0.062 0.938 20 C -0.150 4.150 21 C -0.123 4.123 22 C -0.157 4.157 23 C 0.060 3.940 24 O -0.375 6.375 25 H 0.054 0.946 26 H 0.054 0.946 27 H 0.066 0.934 28 H 0.029 0.971 29 H 0.033 0.967 30 H 0.265 0.735 31 H 0.411 0.589 32 H 0.060 0.940 33 H 0.084 0.916 34 H 0.080 0.920 35 H 0.084 0.916 36 H 0.072 0.928 37 H 0.074 0.926 38 H 0.063 0.937 39 H 0.066 0.934 40 H 0.071 0.929 41 H 0.071 0.929 42 H 0.050 0.950 43 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.391 -13.875 21.817 26.891 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.040 4.040 2 N -0.834 5.834 3 C 0.105 3.895 4 C -0.570 4.570 5 H 0.096 0.904 6 C -0.131 4.131 7 N -0.534 5.534 8 Si 0.700 3.300 9 H -0.198 1.198 10 H -0.210 1.210 11 H -0.190 1.190 12 S 2.791 3.209 13 O -0.974 6.974 14 O -0.947 6.947 15 N -0.895 5.895 16 C -0.005 4.005 17 C -0.157 4.157 18 C 0.032 3.968 19 H 0.080 0.920 20 C -0.188 4.188 21 C -0.161 4.161 22 C -0.195 4.195 23 C -0.017 4.017 24 O -0.294 6.294 25 H 0.073 0.927 26 H 0.073 0.927 27 H 0.085 0.915 28 H 0.047 0.953 29 H 0.051 0.949 30 H 0.075 0.925 31 H 0.244 0.756 32 H 0.078 0.922 33 H 0.102 0.898 34 H 0.098 0.902 35 H 0.102 0.898 36 H 0.091 0.909 37 H 0.092 0.908 38 H 0.082 0.918 39 H 0.085 0.915 40 H 0.090 0.910 41 H 0.090 0.910 42 H 0.068 0.932 43 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -7.202 -14.270 20.672 26.131 hybrid contribution 0.606 0.975 1.439 1.840 sum -6.596 -13.296 22.110 26.630 Atomic orbital electron populations 1.21265 0.79652 1.01106 1.01985 1.57413 1.14415 1.22641 1.88975 1.19441 0.90833 0.80689 0.98577 1.21394 1.36696 1.07002 0.91930 0.90424 1.24883 0.95420 0.97216 0.95549 1.69901 1.42622 1.22010 1.18866 0.86903 0.80371 0.79692 0.83026 1.19816 1.20986 1.19002 1.01940 0.73366 0.72841 0.72800 1.93549 1.67505 1.59760 1.76588 1.93646 1.40661 1.84819 1.75575 1.56277 1.14526 1.86226 1.32522 1.21183 0.88239 0.99345 0.91762 1.21815 0.96755 1.01669 0.95492 1.22081 0.91584 0.91460 0.91643 0.91983 1.22211 0.98338 1.02052 0.96221 1.21588 0.96672 0.99411 0.98384 1.22203 1.00443 0.99581 0.97290 1.22568 0.87538 0.99077 0.92511 1.87997 1.35280 1.62096 1.43990 0.92687 0.92735 0.91523 0.95342 0.94945 0.92546 0.75621 0.92159 0.89759 0.90152 0.89787 0.90885 0.90766 0.91792 0.91525 0.91017 0.91048 0.93163 0.88784 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 1.81 10.33 59.85 0.62 2.43 16 2 N -0.99 -20.29 3.23 -123.05 -0.40 -20.69 16 3 C 0.23 5.40 4.19 -5.19 -0.02 5.38 16 4 C -0.53 -15.35 9.94 -34.44 -0.34 -15.70 16 5 H 0.08 2.47 8.06 -52.49 -0.42 2.05 16 6 C 0.07 2.10 5.47 -17.82 -0.10 2.01 16 7 N -0.90 -27.82 13.96 55.43 0.77 -27.05 16 8 Si 0.87 21.14 27.47 -169.99 -4.67 16.47 16 9 H -0.27 -6.55 7.11 56.52 0.40 -6.15 16 10 H -0.28 -6.78 7.11 56.52 0.40 -6.37 16 11 H -0.27 -5.92 6.54 56.52 0.37 -5.55 16 12 S 2.78 55.18 6.05 -107.50 -0.65 54.53 16 13 O -0.99 -21.19 16.68 -57.17 -0.95 -22.14 16 14 O -0.96 -23.02 17.11 -57.17 -0.98 -24.00 16 15 N -1.14 -16.19 6.05 -10.62 -0.06 -16.26 16 16 C 0.12 1.45 6.14 -4.05 -0.02 1.43 16 17 C -0.12 -1.09 5.06 -26.73 -0.14 -1.23 16 18 C 0.09 0.78 2.64 -26.68 -0.07 0.71 16 19 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 20 C -0.15 -1.05 5.42 -26.59 -0.14 -1.19 16 21 C -0.12 -0.76 6.03 -26.55 -0.16 -0.92 16 22 C -0.16 -0.99 6.14 -26.59 -0.16 -1.16 16 23 C 0.06 0.46 6.84 37.21 0.25 0.71 16 24 O -0.37 -3.88 9.94 -35.23 -0.35 -4.23 16 25 H 0.05 0.98 8.14 -51.93 -0.42 0.56 16 26 H 0.05 0.77 7.79 -51.93 -0.40 0.37 16 27 H 0.07 1.01 7.94 -51.93 -0.41 0.59 16 28 H 0.03 0.67 7.04 -51.93 -0.37 0.31 16 29 H 0.03 0.72 7.02 -51.93 -0.36 0.36 16 30 H 0.26 7.64 8.31 -40.82 -0.34 7.30 16 31 H 0.41 4.96 8.65 -34.47 -0.30 4.67 16 32 H 0.06 0.66 8.14 -51.93 -0.42 0.23 16 33 H 0.08 1.12 7.43 -51.93 -0.39 0.74 16 34 H 0.08 0.77 8.14 -51.93 -0.42 0.34 16 35 H 0.08 0.64 8.14 -51.93 -0.42 0.21 16 36 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 37 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 38 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 39 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 40 H 0.07 0.36 8.14 -51.93 -0.42 -0.07 16 41 H 0.07 0.49 8.14 -51.93 -0.42 0.06 16 42 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 43 H 0.09 0.64 8.14 -51.93 -0.42 0.21 16 LS Contribution 357.53 15.07 5.39 5.39 Total: -1.00 -36.13 357.53 -9.51 -45.64 By element: Atomic # 1 Polarization: 7.19 SS G_CDS: -7.32 Total: -0.12 kcal Atomic # 6 Polarization: -7.24 SS G_CDS: -0.29 Total: -7.53 kcal Atomic # 7 Polarization: -64.31 SS G_CDS: 0.31 Total: -64.00 kcal Atomic # 8 Polarization: -48.09 SS G_CDS: -2.28 Total: -50.37 kcal Atomic # 14 Polarization: 21.14 SS G_CDS: -4.67 Total: 16.47 kcal Atomic # 16 Polarization: 55.18 SS G_CDS: -0.65 Total: 54.53 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -36.13 -9.51 -45.64 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000330762166.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -89.472 kcal (2) G-P(sol) polarization free energy of solvation -36.134 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -125.607 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.505 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.640 kcal (6) G-S(sol) free energy of system = (1) + (5) -135.112 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds