Wall clock time and date at job start Tue Mar 31 2020 04:35:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86798 * 120.00166 * 2 1 4 4 H 1.48498 * 109.47252 * 269.99660 * 3 2 1 5 5 H 1.48500 * 109.47109 * 29.99946 * 3 2 1 6 6 H 1.48504 * 109.47226 * 149.99846 * 3 2 1 7 7 C 1.38819 * 119.99846 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99677 * 164.16907 * 7 2 1 9 9 N 1.36938 * 120.00036 * 344.16546 * 7 2 1 10 10 C 1.47164 * 121.07934 * 153.79054 * 9 7 2 11 11 C 1.53281 * 108.55348 * 128.71769 * 10 9 7 12 12 O 1.43118 * 109.21713 * 53.03497 * 11 10 9 13 13 C 1.41878 * 114.40578 * 299.11545 * 12 11 10 14 14 C 1.54367 * 110.73703 * 183.22753 * 13 12 11 15 15 C 1.54464 * 102.87322 * 83.66301 * 14 13 12 16 16 N 1.47082 * 107.29689 * 21.50175 * 15 14 13 17 17 C 1.34770 * 125.62987 * 180.96723 * 16 15 14 18 18 O 1.21605 * 120.00196 * 180.02562 * 17 16 15 19 19 C 1.47429 * 120.00189 * 0.02834 * 17 16 15 20 20 C 1.41293 * 126.41323 * 359.68245 * 19 17 16 21 21 N 1.30445 * 108.02135 * 179.85632 * 20 19 17 22 22 N 1.39933 * 108.89846 * 0.41153 * 21 20 19 23 23 H 0.97008 * 125.75663 * 179.73422 * 22 21 20 24 24 C 1.34253 * 108.49344 * 359.73550 * 22 21 20 25 25 C 1.47572 * 108.73973 * 0.98979 * 16 15 14 26 26 C 1.47331 * 121.07604 * 333.76622 * 9 7 2 27 27 H 0.97001 * 119.99948 * 0.02562 * 1 2 3 28 28 H 1.08996 * 109.62163 * 248.43712 * 10 9 7 29 29 H 1.08999 * 109.62379 * 8.99849 * 10 9 7 30 30 H 1.08991 * 109.51259 * 172.96086 * 11 10 9 31 31 H 1.09004 * 109.50783 * 293.11330 * 11 10 9 32 32 H 1.09002 * 110.72692 * 325.31755 * 14 13 12 33 33 H 1.08993 * 110.72971 * 202.01040 * 14 13 12 34 34 H 1.08996 * 109.87464 * 140.92678 * 15 14 13 35 35 H 1.09000 * 109.87626 * 262.07662 * 15 14 13 36 36 H 1.07999 * 125.98815 * 0.02562 * 20 19 17 37 37 H 1.08005 * 126.29443 * 179.97438 * 24 22 21 38 38 H 1.08996 * 110.37878 * 217.85953 * 25 16 15 39 39 H 1.08998 * 110.37914 * 95.50889 * 25 16 15 40 40 H 1.09002 * 109.63963 * 109.49064 * 26 9 7 41 41 H 1.08996 * 109.81834 * 348.96202 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4978 2.0463 -1.4000 5 1 1.4477 2.6526 0.7000 6 1 3.5478 1.4401 0.7001 7 6 2.0102 -1.2022 0.0005 8 1 3.0595 -1.2200 -0.2546 9 7 1.3645 -2.3655 0.3246 10 6 1.8354 -3.6632 -0.1851 11 6 1.9815 -4.6277 0.9973 12 8 0.7551 -4.6585 1.7344 13 6 0.3690 -3.4082 2.2826 14 6 -0.9168 -3.5541 3.1242 15 6 -0.3802 -4.0267 4.4933 16 7 1.0357 -3.6355 4.5668 17 6 1.8665 -3.8846 5.5983 18 8 3.0232 -3.5124 5.5510 19 6 1.3731 -4.6084 6.7841 20 6 0.0616 -5.0944 6.9845 21 7 0.0212 -5.6779 8.1505 22 7 1.2836 -5.5863 8.7471 23 1 1.5251 -5.9359 9.6192 24 6 2.1042 -4.9330 7.9092 25 6 1.3963 -2.9246 3.3249 26 6 0.1761 -2.3584 1.1954 27 1 -0.4850 0.8401 -0.0004 28 1 1.1113 -4.0620 -0.8954 29 1 2.8008 -3.5357 -0.6749 30 1 2.2085 -5.6270 0.6261 31 1 2.7883 -4.2878 1.6468 32 1 -1.5792 -4.3029 2.6899 33 1 -1.4263 -2.5953 3.2195 34 1 -0.9396 -3.5468 5.2963 35 1 -0.4700 -5.1102 4.5725 36 1 -0.7623 -5.0015 6.2924 37 1 3.1450 -4.7031 8.0835 38 1 2.4064 -3.1916 3.0143 39 1 1.3143 -1.8471 3.4668 40 1 -0.7101 -2.5982 0.6077 41 1 0.0582 -1.3756 1.6517 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000972274708.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:35:19 Heat of formation + Delta-G solvation = 18.037609 kcal Electronic energy + Delta-G solvation = -26167.367244 eV Core-core repulsion = 22470.489579 eV Total energy + Delta-G solvation = -3696.877665 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 306.148 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -42.41928 -41.35081 -39.66275 -37.51036 -36.24169 -33.53293 -33.19922 -32.52715 -31.29348 -30.44015 -29.22466 -27.55529 -25.18395 -24.94653 -23.42961 -22.91119 -22.20904 -20.59882 -20.36670 -19.28267 -18.83996 -17.68409 -17.38750 -16.80706 -16.64886 -16.17138 -15.98483 -15.72672 -15.60512 -15.52613 -15.08625 -14.99152 -14.63239 -14.47147 -13.98466 -13.87257 -13.51611 -13.22561 -12.96305 -12.74715 -12.60792 -12.42401 -12.25343 -12.20704 -12.14405 -12.10796 -11.75846 -11.12008 -10.97639 -10.84109 -10.75401 -10.49676 -9.97557 -9.53392 -8.70208 -7.89491 -5.34598 0.52549 1.13692 1.45087 1.47847 1.56668 1.76235 2.07383 2.41087 2.48118 2.80319 3.24141 3.38112 3.55909 3.71049 3.78485 3.92469 4.04862 4.09036 4.25849 4.29362 4.35168 4.39019 4.52908 4.59396 4.61143 4.71013 4.77037 4.82949 4.94763 5.05225 5.10059 5.17343 5.24356 5.25840 5.37870 5.54541 5.62629 6.21551 6.30678 6.38832 6.47523 6.60288 7.09288 7.18376 7.76679 8.30609 9.16579 Molecular weight = 306.15amu Principal moments of inertia in cm(-1) A = 0.020113 B = 0.004122 C = 0.003889 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1391.790991 B = 6791.888657 C = 7198.372114 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.930 5.930 2 C -0.042 4.042 3 Si 0.961 3.039 4 H -0.283 1.283 5 H -0.289 1.289 6 H -0.276 1.276 7 C -0.264 4.264 8 H 0.065 0.935 9 N -0.615 5.615 10 C 0.107 3.893 11 C 0.052 3.948 12 O -0.371 6.371 13 C 0.090 3.910 14 C -0.112 4.112 15 C 0.099 3.901 16 N -0.609 5.609 17 C 0.600 3.400 18 O -0.600 6.600 19 C -0.315 4.315 20 C 0.078 3.922 21 N -0.316 5.316 22 N -0.447 5.447 23 H 0.461 0.539 24 C 0.149 3.851 25 C 0.107 3.893 26 C 0.174 3.826 27 H 0.252 0.748 28 H 0.025 0.975 29 H 0.067 0.933 30 H 0.119 0.881 31 H 0.037 0.963 32 H 0.111 0.889 33 H 0.098 0.902 34 H 0.101 0.899 35 H 0.095 0.905 36 H 0.218 0.782 37 H 0.213 0.787 38 H 0.056 0.944 39 H 0.055 0.945 40 H 0.012 0.988 41 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.528 -12.326 15.592 19.935 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.576 5.576 2 C -0.238 4.238 3 Si 0.789 3.211 4 H -0.210 1.210 5 H -0.215 1.215 6 H -0.202 1.202 7 C -0.393 4.393 8 H 0.083 0.917 9 N -0.339 5.339 10 C -0.019 4.019 11 C -0.026 4.026 12 O -0.290 6.290 13 C 0.048 3.952 14 C -0.150 4.150 15 C -0.023 4.023 16 N -0.340 5.340 17 C 0.392 3.608 18 O -0.483 6.483 19 C -0.330 4.330 20 C -0.109 4.109 21 N -0.137 5.137 22 N -0.154 5.154 23 H 0.309 0.691 24 C -0.006 4.006 25 C -0.016 4.016 26 C 0.048 3.952 27 H 0.061 0.939 28 H 0.043 0.957 29 H 0.086 0.914 30 H 0.137 0.863 31 H 0.055 0.945 32 H 0.129 0.871 33 H 0.116 0.884 34 H 0.119 0.881 35 H 0.113 0.887 36 H 0.234 0.766 37 H 0.230 0.770 38 H 0.074 0.926 39 H 0.073 0.927 40 H 0.030 0.970 41 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -1.846 -12.822 16.488 20.968 hybrid contribution 1.395 1.786 -0.822 2.411 sum -0.451 -11.036 15.667 19.169 Atomic orbital electron populations 1.70123 1.06254 1.25947 1.55243 1.25654 0.96092 1.00941 1.01081 0.85384 0.78084 0.80036 0.77624 1.21000 1.21520 1.20167 1.19441 0.92454 0.85595 1.41850 0.91720 1.44377 1.32550 1.02118 1.54888 1.21736 0.98599 0.86555 0.94978 1.23095 0.85937 1.00832 0.92694 1.87620 1.41166 1.30040 1.70203 1.22531 0.94675 0.85603 0.92416 1.22652 0.95179 1.04325 0.92874 1.22607 0.79982 1.01392 0.98271 1.48338 1.12545 1.56377 1.16754 1.17374 0.83753 0.78084 0.81606 1.90736 1.19363 1.56313 1.81910 1.20148 0.96661 1.17596 0.98565 1.25053 0.97281 0.93968 0.94616 1.77144 1.01088 1.24839 1.10627 1.46250 1.07154 1.43650 1.18310 0.69062 1.23344 0.98160 0.90635 0.88494 1.22357 0.99530 0.95726 0.84019 1.20953 0.88043 0.96654 0.89572 0.93851 0.95694 0.91448 0.86297 0.94501 0.87108 0.88391 0.88104 0.88736 0.76582 0.77022 0.92598 0.92655 0.97044 0.91216 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -53.28 11.11 21.65 0.24 -53.04 16 2 C -0.04 -2.30 4.98 84.86 0.42 -1.88 16 3 Si 0.96 44.85 29.58 68.60 2.03 46.88 16 4 H -0.28 -13.00 7.11 99.48 0.71 -12.29 16 5 H -0.29 -13.42 7.11 99.48 0.71 -12.71 16 6 H -0.28 -12.69 7.11 99.48 0.71 -11.99 16 7 C -0.26 -14.47 9.66 84.04 0.81 -13.66 16 8 H 0.07 3.51 7.88 -2.91 -0.02 3.48 16 9 N -0.61 -30.78 2.99 -698.87 -2.09 -32.87 16 10 C 0.11 4.45 6.71 86.35 0.58 5.03 16 11 C 0.05 1.85 6.79 72.08 0.49 2.34 16 12 O -0.37 -13.65 10.28 -148.95 -1.53 -15.18 16 13 C 0.09 3.32 0.83 -10.16 -0.01 3.32 16 14 C -0.11 -3.03 6.12 31.56 0.19 -2.83 16 15 C 0.10 2.26 4.99 86.77 0.43 2.70 16 16 N -0.61 -19.43 3.33 -816.43 -2.72 -22.15 16 17 C 0.60 19.82 7.85 86.67 0.68 20.50 16 18 O -0.60 -24.57 17.17 -4.05 -0.07 -24.64 16 19 C -0.31 -7.62 6.09 -20.15 -0.12 -7.75 16 20 C 0.08 1.56 10.45 85.65 0.89 2.46 16 21 N -0.32 -6.14 12.63 -56.27 -0.71 -6.85 16 22 N -0.45 -6.25 7.29 -56.31 -0.41 -6.66 16 23 H 0.46 2.74 8.96 -213.42 -1.91 0.82 16 24 C 0.15 2.61 11.82 84.28 1.00 3.61 16 25 C 0.11 4.17 5.85 86.55 0.51 4.68 16 26 C 0.17 8.10 4.06 86.01 0.35 8.45 16 27 H 0.25 13.99 8.31 -92.71 -0.77 13.22 16 28 H 0.03 1.05 8.14 -2.39 -0.02 1.03 16 29 H 0.07 2.69 7.96 -2.39 -0.02 2.67 16 30 H 0.12 3.38 8.14 -2.39 -0.02 3.36 16 31 H 0.04 1.41 6.26 -2.38 -0.01 1.40 16 32 H 0.11 2.57 8.14 -2.39 -0.02 2.56 16 33 H 0.10 2.56 8.00 -2.39 -0.02 2.54 16 34 H 0.10 1.73 6.97 -2.39 -0.02 1.71 16 35 H 0.09 1.79 6.85 -2.39 -0.02 1.78 16 36 H 0.22 3.27 4.47 -2.91 -0.01 3.26 16 37 H 0.21 2.70 8.06 -2.91 -0.02 2.68 16 38 H 0.06 2.47 6.01 -2.39 -0.01 2.46 16 39 H 0.06 2.38 7.82 -2.39 -0.02 2.36 16 40 H 0.01 0.58 8.14 -2.39 -0.02 0.56 16 41 H 0.07 3.62 5.95 -2.39 -0.01 3.61 16 Total: -1.00 -75.18 327.96 0.13 -75.05 By element: Atomic # 1 Polarization: 13.34 SS G_CDS: -0.83 Total: 12.50 kcal Atomic # 6 Polarization: 20.74 SS G_CDS: 6.22 Total: 26.97 kcal Atomic # 7 Polarization: -115.88 SS G_CDS: -5.69 Total: -121.57 kcal Atomic # 8 Polarization: -38.22 SS G_CDS: -1.60 Total: -39.82 kcal Atomic # 14 Polarization: 44.85 SS G_CDS: 2.03 Total: 46.88 kcal Total: -75.18 0.13 -75.05 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000972274708.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.084 kcal (2) G-P(sol) polarization free energy of solvation -75.176 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.908 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.130 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.046 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.038 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds