Wall clock time and date at job start Tue Mar 31 2020 04:34:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86800 * 119.99903 * 2 1 4 4 H 1.48494 * 109.47408 * 240.00318 * 3 2 1 5 5 H 1.48506 * 109.47113 * 0.02562 * 3 2 1 6 6 H 1.48501 * 109.47184 * 119.99790 * 3 2 1 7 7 C 1.38811 * 120.00241 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99841 * 179.97438 * 7 2 1 9 9 N 1.36936 * 120.00176 * 359.97438 * 7 2 1 10 10 C 1.46497 * 120.00128 * 180.02562 * 9 7 2 11 11 C 1.53000 * 109.47398 * 180.02562 * 10 9 7 12 12 H 1.09006 * 109.46393 * 304.99638 * 11 10 9 13 13 C 1.54796 * 109.47044 * 185.00054 * 11 10 9 14 14 N 1.45124 * 109.52860 * 172.10427 * 13 11 10 15 15 C 1.34778 * 118.75723 * 269.28818 * 14 13 11 16 16 O 1.21516 * 120.00421 * 186.18494 * 15 14 13 17 17 C 1.48157 * 119.99728 * 6.19054 * 15 14 13 18 18 C 1.39722 * 120.18200 * 186.95592 * 17 15 14 19 19 C 1.38814 * 117.89893 * 180.02562 * 18 17 15 20 20 C 1.38580 * 118.07118 * 0.02562 * 19 18 17 21 21 N 1.32174 * 120.06326 * 359.97438 * 20 19 18 22 22 N 1.28351 * 122.30233 * 0.02562 * 21 20 19 23 23 C 1.47509 * 122.48744 * 89.57025 * 14 13 11 24 24 C 1.53943 * 110.81887 * 317.97715 * 23 14 13 25 25 C 1.51537 * 109.72795 * 320.30448 * 24 23 14 26 26 O 1.38017 * 109.46838 * 64.98310 * 11 10 9 27 27 H 0.96997 * 120.00227 * 359.97438 * 1 2 3 28 28 H 0.96995 * 119.99785 * 0.02562 * 9 7 2 29 29 H 1.08998 * 109.47244 * 59.99843 * 10 9 7 30 30 H 1.09007 * 109.47155 * 300.00309 * 10 9 7 31 31 H 1.09001 * 109.46687 * 52.08656 * 13 11 10 32 32 H 1.08997 * 109.45497 * 292.11429 * 13 11 10 33 33 H 1.08002 * 121.04751 * 359.97438 * 18 17 15 34 34 H 1.08000 * 120.96515 * 179.72631 * 19 18 17 35 35 H 1.07997 * 119.96744 * 180.02562 * 20 19 18 36 36 H 1.09002 * 109.16543 * 78.49006 * 23 14 13 37 37 H 1.08996 * 109.16443 * 197.69607 * 23 14 13 38 38 H 1.08999 * 109.46374 * 200.17788 * 24 23 14 39 39 H 1.08999 * 109.29740 * 80.32923 * 24 23 14 40 40 H 1.08998 * 109.58806 * 331.51395 * 25 24 23 41 41 H 1.08999 * 109.58888 * 211.07999 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.1038 1.6965 -1.2125 5 1 1.2851 2.7465 0.0006 6 1 3.1039 1.6965 1.2125 7 6 2.0103 -1.2021 -0.0005 8 1 3.0903 -1.2020 -0.0010 9 7 1.3257 -2.3881 -0.0005 10 6 2.0582 -3.6567 -0.0005 11 6 1.0641 -4.8198 -0.0012 12 1 0.3797 -4.7130 0.8405 13 6 1.8339 -6.1567 0.1260 14 7 0.8908 -7.2437 0.3131 15 6 0.5429 -7.5916 1.5679 16 8 -0.1554 -8.5680 1.7562 17 6 1.0119 -6.7834 2.7176 18 6 0.7775 -7.2187 4.0244 19 6 1.2370 -6.4243 5.0659 20 6 1.8988 -5.2493 4.7469 21 7 2.0776 -4.9127 3.4813 22 7 1.6564 -5.6408 2.5118 23 6 0.3031 -7.9862 -0.8179 24 6 -0.0924 -7.0273 -1.9555 25 6 -0.6913 -5.7628 -1.3736 26 8 0.3474 -4.8116 -1.1806 27 1 -0.4850 0.8400 0.0004 28 1 0.3557 -2.3881 -0.0005 29 1 2.6849 -3.7144 0.8894 30 1 2.6850 -3.7144 -0.8905 31 1 2.5068 -6.1083 0.9822 32 1 2.4126 -6.3301 -0.7812 33 1 0.2546 -8.1436 4.2181 34 1 1.0789 -6.7112 6.0951 35 1 2.2694 -4.6083 5.5331 36 1 1.0312 -8.7072 -1.1896 37 1 -0.5834 -8.5189 -0.4742 38 1 -0.8248 -7.5121 -2.6009 39 1 0.7935 -6.7747 -2.5380 40 1 -1.1625 -5.9883 -0.4169 41 1 -1.4331 -5.3591 -2.0627 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001201701708.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:34:09 Heat of formation + Delta-G solvation = 29.366157 kcal Electronic energy + Delta-G solvation = -26201.963996 eV Core-core repulsion = 22505.577575 eV Total energy + Delta-G solvation = -3696.386422 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 306.148 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.54670 -40.05142 -38.49058 -35.45418 -34.72079 -33.46756 -33.27743 -32.26401 -30.81063 -28.66499 -26.89265 -25.71827 -24.77490 -24.55971 -22.67150 -21.66369 -20.82680 -19.93799 -18.16015 -17.46481 -17.06600 -16.87469 -16.44648 -16.39532 -15.72818 -15.21810 -15.14538 -14.54651 -14.33590 -14.12058 -13.69607 -13.53031 -13.40517 -13.07427 -12.95458 -12.48204 -12.18251 -12.08875 -11.77461 -11.37998 -11.11051 -10.82158 -10.68947 -10.65164 -10.49326 -10.30556 -10.22749 -9.99794 -9.84379 -9.74722 -9.55996 -9.28565 -8.70147 -8.52585 -6.70247 -5.58395 -2.84738 0.27419 0.57187 2.45797 2.68776 3.46160 3.54877 3.58210 3.59765 3.69499 4.10640 4.18250 4.30646 4.45567 4.63661 4.72324 4.76649 4.86624 4.92034 5.12148 5.26574 5.37689 5.42642 5.48596 5.60274 5.62287 5.67503 5.73699 5.76327 5.84936 5.96533 6.11196 6.21432 6.27290 6.41479 6.50279 6.96338 6.97132 7.12414 7.80923 7.85029 8.15453 8.44610 8.60395 9.71414 10.32475 10.67920 11.64992 Molecular weight = 306.15amu Principal moments of inertia in cm(-1) A = 0.013518 B = 0.005070 C = 0.003925 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2070.791398 B = 5521.330992 C = 7131.727948 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.936 5.936 2 C -0.018 4.018 3 Si 0.905 3.095 4 H -0.287 1.287 5 H -0.293 1.293 6 H -0.287 1.287 7 C -0.227 4.227 8 H 0.069 0.931 9 N -0.724 5.724 10 C 0.171 3.829 11 C 0.102 3.898 12 H 0.051 0.949 13 C 0.069 3.931 14 N -0.586 5.586 15 C 0.571 3.429 16 O -0.536 6.536 17 C 0.012 3.988 18 C -0.068 4.068 19 C -0.124 4.124 20 C 0.058 3.942 21 N -0.227 5.227 22 N -0.190 5.190 23 C 0.110 3.890 24 C -0.165 4.165 25 C 0.073 3.927 26 O -0.372 6.372 27 H 0.253 0.747 28 H 0.384 0.616 29 H 0.047 0.953 30 H 0.020 0.980 31 H 0.115 0.885 32 H 0.080 0.920 33 H 0.159 0.841 34 H 0.156 0.844 35 H 0.178 0.822 36 H 0.069 0.931 37 H 0.090 0.910 38 H 0.085 0.915 39 H 0.082 0.918 40 H 0.044 0.956 41 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.584 -19.444 6.479 20.556 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.586 5.586 2 C -0.213 4.213 3 Si 0.736 3.264 4 H -0.214 1.214 5 H -0.219 1.219 6 H -0.214 1.214 7 C -0.359 4.359 8 H 0.087 0.913 9 N -0.368 5.368 10 C 0.043 3.957 11 C 0.042 3.958 12 H 0.068 0.932 13 C -0.055 4.055 14 N -0.317 5.317 15 C 0.356 3.644 16 O -0.413 6.413 17 C -0.133 4.133 18 C -0.097 4.097 19 C -0.153 4.153 20 C -0.105 4.105 21 N -0.070 5.070 22 N -0.038 5.038 23 C -0.011 4.011 24 C -0.203 4.203 25 C -0.004 4.004 26 O -0.290 6.290 27 H 0.062 0.938 28 H 0.218 0.782 29 H 0.065 0.935 30 H 0.038 0.962 31 H 0.133 0.867 32 H 0.099 0.901 33 H 0.177 0.823 34 H 0.174 0.826 35 H 0.195 0.805 36 H 0.087 0.913 37 H 0.108 0.892 38 H 0.104 0.896 39 H 0.101 0.899 40 H 0.062 0.938 41 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 1.994 -18.646 5.306 19.488 hybrid contribution -0.515 -0.262 1.325 1.446 sum 1.478 -18.908 6.631 20.092 Atomic orbital electron populations 1.69666 1.05071 1.25331 1.58496 1.24689 0.95447 0.97447 1.03704 0.86291 0.78453 0.83865 0.77743 1.21430 1.21913 1.21429 1.19188 0.90918 0.84196 1.41576 0.91311 1.42188 1.05865 0.99580 1.89183 1.20586 0.92324 0.84216 0.98591 1.22154 0.93526 0.93738 0.86407 0.93157 1.23083 0.92165 0.86184 1.04098 1.47863 1.43982 1.34612 1.05199 1.17785 0.80424 0.83623 0.82582 1.90762 1.38861 1.26805 1.84881 1.22845 0.99827 0.95875 0.94752 1.22350 0.95326 1.00572 0.91480 1.22457 0.96734 0.94887 1.01259 1.24621 0.93943 0.95046 0.96846 1.73400 1.13357 1.22362 0.97855 1.73922 1.04198 1.00973 1.24661 1.21997 0.99263 0.93840 0.86027 1.22570 1.02879 0.97084 0.97796 1.22093 0.90017 0.88455 0.99791 1.86440 1.48019 1.55449 1.39065 0.93765 0.78207 0.93524 0.96194 0.86745 0.90129 0.82342 0.82594 0.80503 0.91275 0.89165 0.89637 0.89933 0.93773 0.89293 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -29.58 13.06 55.49 0.72 -28.85 16 2 C -0.02 -0.53 5.50 -17.43 -0.10 -0.62 16 3 Si 0.90 23.19 29.55 -169.99 -5.02 18.16 16 4 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 5 H -0.29 -7.55 7.11 56.52 0.40 -7.15 16 6 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 7 C -0.23 -6.65 9.99 -15.06 -0.15 -6.80 16 8 H 0.07 1.94 7.83 -52.48 -0.41 1.52 16 9 N -0.72 -19.61 5.54 -59.91 -0.33 -19.94 16 10 C 0.17 3.71 5.92 -4.04 -0.02 3.68 16 11 C 0.10 1.86 1.82 -25.78 -0.05 1.82 16 12 H 0.05 1.02 7.04 -51.93 -0.37 0.66 16 13 C 0.07 1.00 4.40 -3.83 -0.02 0.99 16 14 N -0.59 -8.00 2.18 -173.24 -0.38 -8.38 16 15 C 0.57 8.25 7.61 -12.19 -0.09 8.16 16 16 O -0.54 -8.42 15.76 5.35 0.08 -8.34 16 17 C 0.01 0.17 6.59 -82.83 -0.55 -0.38 16 18 C -0.07 -0.71 9.73 -38.81 -0.38 -1.08 16 19 C -0.12 -1.02 10.20 -39.24 -0.40 -1.42 16 20 C 0.06 0.60 11.31 -17.28 -0.20 0.40 16 21 N -0.23 -3.38 11.51 30.59 0.35 -3.03 16 22 N -0.19 -2.89 5.44 33.32 0.18 -2.71 16 23 C 0.11 1.26 6.16 -3.00 -0.02 1.24 16 24 C -0.17 -1.84 5.79 -26.98 -0.16 -2.00 16 25 C 0.07 1.07 6.38 36.42 0.23 1.30 16 26 O -0.37 -6.96 9.38 -26.54 -0.25 -7.21 16 27 H 0.25 7.71 8.31 -40.82 -0.34 7.38 16 28 H 0.38 11.19 7.65 -40.82 -0.31 10.87 16 29 H 0.05 1.01 8.02 -51.93 -0.42 0.59 16 30 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 31 H 0.12 1.69 5.21 -52.07 -0.27 1.42 16 32 H 0.08 1.09 8.11 -51.93 -0.42 0.67 16 33 H 0.16 1.38 7.73 -52.49 -0.41 0.97 16 34 H 0.16 0.65 8.06 -52.49 -0.42 0.23 16 35 H 0.18 1.22 8.06 -52.49 -0.42 0.80 16 36 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 37 H 0.09 1.05 7.07 -51.93 -0.37 0.68 16 38 H 0.09 0.74 8.14 -51.93 -0.42 0.32 16 39 H 0.08 0.96 8.01 -51.93 -0.42 0.54 16 40 H 0.04 0.67 7.41 -51.93 -0.38 0.29 16 41 H 0.09 1.21 8.14 -51.93 -0.42 0.79 16 LS Contribution 336.21 15.07 5.07 5.07 Total: -1.00 -35.82 336.21 -6.91 -42.72 By element: Atomic # 1 Polarization: 12.67 SS G_CDS: -5.44 Total: 7.23 kcal Atomic # 6 Polarization: 7.17 SS G_CDS: -1.89 Total: 5.28 kcal Atomic # 7 Polarization: -63.46 SS G_CDS: 0.55 Total: -62.91 kcal Atomic # 8 Polarization: -15.38 SS G_CDS: -0.16 Total: -15.55 kcal Atomic # 14 Polarization: 23.19 SS G_CDS: -5.02 Total: 18.16 kcal Total LS contribution 5.07 Total: 5.07 kcal Total: -35.82 -6.91 -42.72 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001201701708.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.089 kcal (2) G-P(sol) polarization free energy of solvation -35.817 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.271 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.905 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.722 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.366 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds