Wall clock time and date at job start Tue Mar 31 2020 04:34:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86800 * 119.99903 * 2 1 4 4 H 1.48494 * 109.47408 * 240.00318 * 3 2 1 5 5 H 1.48506 * 109.47113 * 0.02562 * 3 2 1 6 6 H 1.48501 * 109.47184 * 119.99790 * 3 2 1 7 7 C 1.38811 * 120.00241 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99841 * 179.97438 * 7 2 1 9 9 N 1.36936 * 120.00176 * 359.97438 * 7 2 1 10 10 C 1.46497 * 120.00128 * 180.02562 * 9 7 2 11 11 C 1.53000 * 109.47398 * 180.02562 * 10 9 7 12 12 H 1.09006 * 109.46393 * 304.99638 * 11 10 9 13 13 C 1.54796 * 109.47044 * 185.00054 * 11 10 9 14 14 N 1.45124 * 109.52860 * 172.10427 * 13 11 10 15 15 C 1.34778 * 118.75723 * 269.28818 * 14 13 11 16 16 O 1.21516 * 120.00421 * 186.18494 * 15 14 13 17 17 C 1.48157 * 119.99728 * 6.19054 * 15 14 13 18 18 C 1.39722 * 120.18200 * 186.95592 * 17 15 14 19 19 C 1.38814 * 117.89893 * 180.02562 * 18 17 15 20 20 C 1.38580 * 118.07118 * 0.02562 * 19 18 17 21 21 N 1.32174 * 120.06326 * 359.97438 * 20 19 18 22 22 N 1.28351 * 122.30233 * 0.02562 * 21 20 19 23 23 C 1.47509 * 122.48744 * 89.57025 * 14 13 11 24 24 C 1.53943 * 110.81887 * 317.97715 * 23 14 13 25 25 C 1.51537 * 109.72795 * 320.30448 * 24 23 14 26 26 O 1.38017 * 109.46838 * 64.98310 * 11 10 9 27 27 H 0.96997 * 120.00227 * 359.97438 * 1 2 3 28 28 H 0.96995 * 119.99785 * 0.02562 * 9 7 2 29 29 H 1.08998 * 109.47244 * 59.99843 * 10 9 7 30 30 H 1.09007 * 109.47155 * 300.00309 * 10 9 7 31 31 H 1.09001 * 109.46687 * 52.08656 * 13 11 10 32 32 H 1.08997 * 109.45497 * 292.11429 * 13 11 10 33 33 H 1.08002 * 121.04751 * 359.97438 * 18 17 15 34 34 H 1.08000 * 120.96515 * 179.72631 * 19 18 17 35 35 H 1.07997 * 119.96744 * 180.02562 * 20 19 18 36 36 H 1.09002 * 109.16543 * 78.49006 * 23 14 13 37 37 H 1.08996 * 109.16443 * 197.69607 * 23 14 13 38 38 H 1.08999 * 109.46374 * 200.17788 * 24 23 14 39 39 H 1.08999 * 109.29740 * 80.32923 * 24 23 14 40 40 H 1.08998 * 109.58806 * 331.51395 * 25 24 23 41 41 H 1.08999 * 109.58888 * 211.07999 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.1038 1.6965 -1.2125 5 1 1.2851 2.7465 0.0006 6 1 3.1039 1.6965 1.2125 7 6 2.0103 -1.2021 -0.0005 8 1 3.0903 -1.2020 -0.0010 9 7 1.3257 -2.3881 -0.0005 10 6 2.0582 -3.6567 -0.0005 11 6 1.0641 -4.8198 -0.0012 12 1 0.3797 -4.7130 0.8405 13 6 1.8339 -6.1567 0.1260 14 7 0.8908 -7.2437 0.3131 15 6 0.5429 -7.5916 1.5679 16 8 -0.1554 -8.5680 1.7562 17 6 1.0119 -6.7834 2.7176 18 6 0.7775 -7.2187 4.0244 19 6 1.2370 -6.4243 5.0659 20 6 1.8988 -5.2493 4.7469 21 7 2.0776 -4.9127 3.4813 22 7 1.6564 -5.6408 2.5118 23 6 0.3031 -7.9862 -0.8179 24 6 -0.0924 -7.0273 -1.9555 25 6 -0.6913 -5.7628 -1.3736 26 8 0.3474 -4.8116 -1.1806 27 1 -0.4850 0.8400 0.0004 28 1 0.3557 -2.3881 -0.0005 29 1 2.6849 -3.7144 0.8894 30 1 2.6850 -3.7144 -0.8905 31 1 2.5068 -6.1083 0.9822 32 1 2.4126 -6.3301 -0.7812 33 1 0.2546 -8.1436 4.2181 34 1 1.0789 -6.7112 6.0951 35 1 2.2694 -4.6083 5.5331 36 1 1.0312 -8.7072 -1.1896 37 1 -0.5834 -8.5189 -0.4742 38 1 -0.8248 -7.5121 -2.6009 39 1 0.7935 -6.7747 -2.5380 40 1 -1.1625 -5.9883 -0.4169 41 1 -1.4331 -5.3591 -2.0627 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001201701708.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:34:08 Heat of formation + Delta-G solvation = 3.544413 kcal Electronic energy + Delta-G solvation = -26203.083711 eV Core-core repulsion = 22505.577575 eV Total energy + Delta-G solvation = -3697.506137 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 306.148 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -42.52319 -41.12931 -39.75193 -36.74155 -36.38491 -34.78140 -34.15773 -33.50820 -32.57204 -30.20609 -28.00244 -27.12231 -25.97527 -25.57007 -24.44156 -22.84597 -22.31979 -20.96770 -19.19230 -19.16957 -18.47874 -17.76854 -17.63746 -17.51342 -16.87990 -16.69072 -16.32853 -16.08385 -15.64190 -15.09271 -15.07007 -14.75785 -14.72681 -14.59397 -14.20874 -13.80495 -13.53759 -13.42590 -13.21693 -12.75198 -12.68123 -12.47772 -12.18034 -12.09337 -11.88359 -11.75779 -11.53328 -11.29297 -11.24470 -10.95692 -10.87930 -10.70701 -10.51476 -9.72750 -8.90778 -7.86897 -5.14771 -0.60839 -0.23135 1.43563 1.49292 1.54111 1.59672 1.68654 2.53954 2.61088 2.72402 2.79435 3.32485 3.46677 3.52133 3.70017 3.74451 3.83056 3.90574 4.05866 4.06816 4.12105 4.19180 4.32975 4.43583 4.48604 4.59513 4.69405 4.75019 4.75891 4.83910 4.88996 4.99523 5.13157 5.16884 5.25536 5.29041 5.37418 5.54160 6.01861 6.33675 6.72234 6.80721 7.39642 7.53870 8.16340 8.41226 9.37395 Molecular weight = 306.15amu Principal moments of inertia in cm(-1) A = 0.013518 B = 0.005070 C = 0.003925 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2070.791398 B = 5521.330992 C = 7131.727948 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.975 5.975 2 C -0.080 4.080 3 Si 0.976 3.024 4 H -0.277 1.277 5 H -0.296 1.296 6 H -0.276 1.276 7 C -0.236 4.236 8 H 0.077 0.923 9 N -0.737 5.737 10 C 0.173 3.827 11 C 0.118 3.882 12 H 0.025 0.975 13 C 0.086 3.914 14 N -0.587 5.587 15 C 0.568 3.432 16 O -0.553 6.553 17 C -0.010 4.010 18 C -0.073 4.073 19 C -0.098 4.098 20 C 0.057 3.943 21 N -0.279 5.279 22 N -0.220 5.220 23 C 0.107 3.893 24 C -0.152 4.152 25 C 0.068 3.932 26 O -0.401 6.401 27 H 0.249 0.751 28 H 0.370 0.630 29 H 0.049 0.951 30 H 0.020 0.980 31 H 0.115 0.885 32 H 0.095 0.905 33 H 0.176 0.824 34 H 0.207 0.793 35 H 0.210 0.790 36 H 0.092 0.908 37 H 0.089 0.911 38 H 0.117 0.883 39 H 0.082 0.918 40 H 0.032 0.968 41 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.447 -20.673 7.371 22.084 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.626 5.626 2 C -0.272 4.272 3 Si 0.805 3.195 4 H -0.204 1.204 5 H -0.223 1.223 6 H -0.202 1.202 7 C -0.368 4.368 8 H 0.095 0.905 9 N -0.378 5.378 10 C 0.046 3.954 11 C 0.059 3.941 12 H 0.043 0.957 13 C -0.039 4.039 14 N -0.317 5.317 15 C 0.354 3.646 16 O -0.432 6.432 17 C -0.156 4.156 18 C -0.101 4.101 19 C -0.127 4.127 20 C -0.106 4.106 21 N -0.121 5.121 22 N -0.067 5.067 23 C -0.014 4.014 24 C -0.190 4.190 25 C -0.008 4.008 26 O -0.320 6.320 27 H 0.057 0.943 28 H 0.201 0.799 29 H 0.066 0.934 30 H 0.038 0.962 31 H 0.133 0.867 32 H 0.113 0.887 33 H 0.193 0.807 34 H 0.224 0.776 35 H 0.226 0.774 36 H 0.110 0.890 37 H 0.107 0.893 38 H 0.135 0.865 39 H 0.101 0.899 40 H 0.050 0.950 41 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges 2.897 -19.910 6.182 21.048 hybrid contribution -0.822 0.061 1.130 1.399 sum 2.075 -19.849 7.312 21.254 Atomic orbital electron populations 1.69852 1.06797 1.25849 1.60151 1.25575 0.96357 1.01121 1.04119 0.85167 0.77110 0.78965 0.78262 1.20361 1.22279 1.20208 1.19632 0.91483 0.85263 1.40437 0.90531 1.42381 1.05330 1.00986 1.89140 1.20660 0.92911 0.83567 0.98287 1.21774 0.92604 0.94349 0.85421 0.95719 1.22779 0.91743 0.84572 1.04779 1.47924 1.43771 1.34183 1.05803 1.18000 0.80064 0.83497 0.83059 1.90736 1.39651 1.27563 1.85202 1.22941 1.00846 0.95927 0.95882 1.22660 0.95274 1.01470 0.90736 1.22963 0.93840 0.92920 1.02946 1.25214 0.93264 0.96178 0.95964 1.73259 1.15333 1.23707 0.99764 1.73780 1.05500 1.01739 1.25636 1.22192 0.99814 0.93995 0.85369 1.22482 1.03456 0.95274 0.97828 1.22312 0.89446 0.89434 0.99645 1.86356 1.49172 1.57548 1.38969 0.94261 0.79938 0.93358 0.96164 0.86717 0.88721 0.80672 0.77641 0.77350 0.88974 0.89272 0.86452 0.89932 0.94958 0.88575 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -63.10 13.06 21.65 0.28 -62.82 16 2 C -0.08 -4.86 5.50 84.86 0.47 -4.39 16 3 Si 0.98 48.09 29.55 68.60 2.03 50.12 16 4 H -0.28 -13.12 7.11 99.48 0.71 -12.41 16 5 H -0.30 -14.65 7.11 99.48 0.71 -13.94 16 6 H -0.28 -12.98 7.11 99.48 0.71 -12.27 16 7 C -0.24 -14.04 9.99 84.03 0.84 -13.20 16 8 H 0.08 4.33 7.83 -2.91 -0.02 4.30 16 9 N -0.74 -41.16 5.54 -343.45 -1.90 -43.06 16 10 C 0.17 7.71 5.92 86.38 0.51 8.22 16 11 C 0.12 4.48 1.82 31.21 0.06 4.53 16 12 H 0.02 1.07 7.04 -2.38 -0.02 1.05 16 13 C 0.09 2.51 4.40 87.25 0.38 2.90 16 14 N -0.59 -15.78 2.18 -820.31 -1.79 -17.57 16 15 C 0.57 16.34 7.61 86.88 0.66 17.00 16 16 O -0.55 -17.08 15.76 -3.77 -0.06 -17.14 16 17 C -0.01 -0.27 6.59 42.00 0.28 0.00 16 18 C -0.07 -1.39 9.73 22.77 0.22 -1.17 16 19 C -0.10 -1.31 10.20 22.49 0.23 -1.08 16 20 C 0.06 1.07 11.31 84.72 0.96 2.02 16 21 N -0.28 -8.36 11.51 -57.15 -0.66 -9.01 16 22 N -0.22 -6.84 5.44 -48.48 -0.26 -7.10 16 23 C 0.11 2.27 6.16 86.50 0.53 2.81 16 24 C -0.15 -3.15 5.79 30.43 0.18 -2.98 16 25 C 0.07 1.98 6.38 71.50 0.46 2.43 16 26 O -0.40 -15.38 9.38 -117.88 -1.11 -16.49 16 27 H 0.25 15.55 8.31 -92.71 -0.77 14.78 16 28 H 0.37 22.48 7.65 -92.71 -0.71 21.77 16 29 H 0.05 2.16 8.02 -2.39 -0.02 2.14 16 30 H 0.02 0.91 8.14 -2.38 -0.02 0.89 16 31 H 0.12 3.45 5.21 -2.57 -0.01 3.44 16 32 H 0.09 2.48 8.11 -2.39 -0.02 2.46 16 33 H 0.18 2.68 7.73 -2.91 -0.02 2.66 16 34 H 0.21 0.65 8.06 -2.91 -0.02 0.62 16 35 H 0.21 2.33 8.06 -2.91 -0.02 2.30 16 36 H 0.09 1.57 8.14 -2.39 -0.02 1.55 16 37 H 0.09 1.95 7.07 -2.39 -0.02 1.93 16 38 H 0.12 1.71 8.14 -2.39 -0.02 1.69 16 39 H 0.08 1.76 8.01 -2.39 -0.02 1.74 16 40 H 0.03 1.00 7.41 -2.39 -0.02 0.99 16 41 H 0.10 2.61 8.14 -2.39 -0.02 2.59 16 Total: -1.00 -80.34 336.21 2.65 -77.69 By element: Atomic # 1 Polarization: 27.94 SS G_CDS: 0.35 Total: 28.29 kcal Atomic # 6 Polarization: 11.33 SS G_CDS: 5.77 Total: 17.10 kcal Atomic # 7 Polarization: -135.24 SS G_CDS: -4.33 Total: -139.57 kcal Atomic # 8 Polarization: -32.47 SS G_CDS: -1.17 Total: -33.63 kcal Atomic # 14 Polarization: 48.09 SS G_CDS: 2.03 Total: 50.12 kcal Total: -80.34 2.65 -77.69 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001201701708.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.235 kcal (2) G-P(sol) polarization free energy of solvation -80.341 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.894 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.650 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.691 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.544 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds