Wall clock time and date at job start Tue Mar 31 2020 04:34:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86794 * 120.00072 * 2 1 4 4 H 1.48498 * 109.47400 * 270.00111 * 3 2 1 5 5 H 1.48500 * 109.47102 * 30.00235 * 3 2 1 6 6 H 1.48504 * 109.47055 * 150.00026 * 3 2 1 7 7 C 1.38817 * 119.99743 * 180.02562 * 2 1 3 8 8 H 1.08006 * 119.99850 * 179.97438 * 7 2 1 9 9 N 1.36936 * 119.99904 * 359.97438 * 7 2 1 10 10 C 1.46506 * 119.99401 * 174.37709 * 9 7 2 11 11 C 1.52997 * 110.01889 * 61.55153 * 10 9 7 12 12 N 1.46498 * 109.47234 * 55.25513 * 11 10 9 13 13 C 1.34774 * 120.00461 * 175.52849 * 12 11 10 14 14 O 1.21553 * 119.99418 * 0.27707 * 13 12 11 15 15 C 1.47929 * 120.00469 * 180.02562 * 13 12 11 16 16 C 1.39975 * 120.11855 * 179.72543 * 15 13 12 17 17 C 1.38420 * 117.96922 * 179.73611 * 16 15 13 18 18 C 1.39338 * 118.03626 * 0.52725 * 17 16 15 19 19 O 1.35521 * 120.02990 * 179.75171 * 18 17 16 20 20 N 1.32677 * 119.94343 * 359.72860 * 18 17 16 21 21 N 1.28355 * 122.19932 * 359.97438 * 20 18 17 22 22 C 1.54272 * 110.06950 * 182.97244 * 10 9 7 23 23 C 1.54885 * 104.19810 * 95.69387 * 22 10 9 24 24 C 1.54896 * 102.74727 * 37.94295 * 23 22 10 25 25 C 1.53876 * 110.03383 * 300.15738 * 10 9 7 26 26 H 0.96998 * 120.00052 * 359.97438 * 1 2 3 27 27 H 0.96998 * 120.00421 * 354.37432 * 9 7 2 28 28 H 1.08998 * 109.46945 * 295.25869 * 11 10 9 29 29 H 1.08995 * 109.46902 * 175.25521 * 11 10 9 30 30 H 0.97003 * 119.99663 * 355.53430 * 12 11 10 31 31 H 1.08004 * 121.01415 * 359.97438 * 16 15 13 32 32 H 1.08001 * 120.97888 * 180.25943 * 17 16 15 33 33 H 0.96706 * 113.99849 * 269.97907 * 19 18 17 34 34 H 1.08998 * 110.48003 * 214.37719 * 22 10 9 35 35 H 1.08999 * 110.48459 * 337.01357 * 22 10 9 36 36 H 1.09000 * 110.75930 * 279.62719 * 23 22 10 37 37 H 1.09004 * 110.75305 * 156.25803 * 23 22 10 38 38 H 1.08994 * 110.48160 * 203.37849 * 24 23 22 39 39 H 1.08997 * 110.48354 * 80.73885 * 24 23 22 40 40 H 1.09004 * 110.03155 * 359.95328 * 25 10 9 41 41 H 1.08994 * 110.03160 * 121.38451 * 25 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0464 -1.4000 5 1 1.4476 2.6526 0.7001 6 1 3.5477 1.4401 0.7001 7 6 2.0102 -1.2022 -0.0005 8 1 3.0903 -1.2022 -0.0010 9 7 1.3254 -2.3881 -0.0005 10 6 2.0527 -3.6537 -0.1254 11 6 3.0120 -3.8252 1.0540 12 7 2.2662 -3.7151 2.3101 13 6 2.8915 -3.9234 3.4857 14 8 4.0755 -4.1977 3.5040 15 6 2.1383 -3.8127 4.7541 16 6 2.7840 -4.0342 5.9761 17 6 2.0380 -3.9136 7.1358 18 6 0.6880 -3.5902 7.0154 19 8 -0.0814 -3.4668 8.1242 20 7 0.1564 -3.4026 5.8143 21 7 0.8463 -3.5080 4.7370 22 6 1.0589 -4.8328 -0.1741 23 6 0.8678 -5.1062 -1.6866 24 6 2.2898 -4.8796 -2.2573 25 6 2.8352 -3.6836 -1.4500 26 1 -0.4850 0.8400 0.0004 27 1 0.3590 -2.3901 0.0822 28 1 3.7765 -3.0492 1.0163 29 1 3.4858 -4.8051 0.9975 30 1 1.3222 -3.4923 2.2957 31 1 3.8332 -4.2877 6.0131 32 1 2.4880 -4.0698 8.1050 33 1 -0.5067 -4.2899 8.4014 34 1 1.4802 -5.7073 0.3215 35 1 0.1113 -4.5521 0.2856 36 1 0.1602 -4.3997 -2.1206 37 1 0.5428 -6.1329 -1.8554 38 1 2.2403 -4.6332 -3.3179 39 1 2.9097 -5.7619 -2.0982 40 1 2.6733 -2.7567 -2.0003 41 1 3.8984 -3.8202 -1.2525 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753660756.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:34:23 Heat of formation + Delta-G solvation = -7.418643 kcal Electronic energy + Delta-G solvation = -25296.426147 eV Core-core repulsion = 21598.444616 eV Total energy + Delta-G solvation = -3697.981530 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 306.148 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.38433 -39.43196 -38.23577 -37.66605 -34.27339 -33.42497 -33.25238 -31.81084 -30.52193 -28.27991 -27.90254 -25.62189 -24.79286 -23.94368 -23.09351 -20.91284 -20.14913 -19.40799 -18.86255 -18.01364 -17.61973 -16.93963 -16.36300 -15.76756 -15.24254 -14.98713 -14.90150 -14.48559 -14.24343 -13.97836 -13.86779 -13.40106 -13.16824 -12.96706 -12.56660 -12.53075 -11.96903 -11.95105 -11.53740 -11.00526 -10.80829 -10.66606 -10.56680 -10.56261 -10.49337 -10.35741 -10.09911 -9.91996 -9.86909 -9.81214 -9.69865 -9.62042 -8.90421 -8.55922 -6.99216 -5.77237 -3.07007 0.22844 0.52359 2.60279 3.07801 3.30658 3.43578 3.50300 3.50806 3.60529 3.95005 4.38379 4.49344 4.59106 4.70609 4.84616 5.11268 5.15944 5.25494 5.39286 5.56666 5.60008 5.68028 5.73400 5.77771 5.96140 5.98656 6.12262 6.15171 6.28796 6.30974 6.42334 6.57980 6.60111 6.75251 6.82249 6.90315 6.97519 7.12558 7.73789 7.86568 8.36424 8.40904 8.46322 9.52708 10.06761 10.42187 11.44549 Molecular weight = 306.15amu Principal moments of inertia in cm(-1) A = 0.011332 B = 0.004730 C = 0.003886 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2470.215511 B = 5918.693008 C = 7203.161998 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.927 5.927 2 C -0.006 4.006 3 Si 0.900 3.100 4 H -0.290 1.290 5 H -0.292 1.292 6 H -0.283 1.283 7 C -0.237 4.237 8 H 0.069 0.931 9 N -0.711 5.711 10 C 0.188 3.812 11 C 0.114 3.886 12 N -0.672 5.672 13 C 0.567 3.433 14 O -0.546 6.546 15 C 0.023 3.977 16 C -0.051 4.051 17 C -0.143 4.143 18 C 0.266 3.734 19 O -0.473 6.473 20 N -0.252 5.252 21 N -0.173 5.173 22 C -0.124 4.124 23 C -0.119 4.119 24 C -0.120 4.120 25 C -0.129 4.129 26 H 0.255 0.745 27 H 0.385 0.615 28 H 0.068 0.932 29 H 0.060 0.940 30 H 0.416 0.584 31 H 0.167 0.833 32 H 0.161 0.839 33 H 0.407 0.593 34 H 0.063 0.937 35 H 0.068 0.932 36 H 0.069 0.931 37 H 0.055 0.945 38 H 0.057 0.943 39 H 0.055 0.945 40 H 0.083 0.917 41 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.614 -13.615 10.042 17.118 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.574 5.574 2 C -0.203 4.203 3 Si 0.732 3.268 4 H -0.217 1.217 5 H -0.219 1.219 6 H -0.209 1.209 7 C -0.368 4.368 8 H 0.087 0.913 9 N -0.353 5.353 10 C 0.096 3.904 11 C -0.012 4.012 12 N -0.321 5.321 13 C 0.349 3.651 14 O -0.424 6.424 15 C -0.125 4.125 16 C -0.080 4.080 17 C -0.173 4.173 18 C 0.081 3.919 19 O -0.279 6.279 20 N -0.105 5.105 21 N -0.022 5.022 22 C -0.162 4.162 23 C -0.156 4.156 24 C -0.158 4.158 25 C -0.169 4.169 26 H 0.065 0.935 27 H 0.220 0.780 28 H 0.086 0.914 29 H 0.078 0.922 30 H 0.254 0.746 31 H 0.184 0.816 32 H 0.179 0.821 33 H 0.266 0.734 34 H 0.081 0.919 35 H 0.087 0.913 36 H 0.088 0.912 37 H 0.074 0.926 38 H 0.076 0.924 39 H 0.074 0.926 40 H 0.102 0.898 41 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 2.363 -12.701 9.188 15.853 hybrid contribution 0.805 0.516 1.096 1.454 sum 3.168 -12.185 10.284 16.256 Atomic orbital electron populations 1.69648 1.04997 1.25655 1.57134 1.24706 0.95394 0.97502 1.02695 0.86300 0.78795 0.84289 0.77462 1.21730 1.21886 1.20864 1.19068 0.90938 0.83809 1.42968 0.91280 1.42555 1.06183 0.99387 1.87161 1.20450 0.91019 0.87509 0.91443 1.22123 0.95468 1.00363 0.83236 1.45723 1.15172 1.66289 1.04869 1.17408 0.86157 0.78785 0.82743 1.90771 1.14462 1.50242 1.86901 1.23106 0.93347 0.99815 0.96191 1.22415 1.02568 0.92643 0.90359 1.22528 0.94223 0.99599 1.00974 1.21075 0.89211 0.93757 0.87808 1.84752 1.65806 1.38503 1.38795 1.73153 1.30573 1.11747 0.95066 1.73402 1.04583 1.05399 1.18810 1.22592 0.99573 0.97475 0.96561 1.22413 0.97317 1.00200 0.95714 1.22307 0.96277 0.98096 0.99131 1.22658 0.98397 0.98944 0.96925 0.93514 0.77969 0.91377 0.92186 0.74578 0.81594 0.82141 0.73420 0.91858 0.91328 0.91202 0.92618 0.92445 0.92613 0.89821 0.93011 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -27.13 13.07 55.49 0.73 -26.41 16 2 C -0.01 -0.18 5.50 -17.43 -0.10 -0.27 16 3 Si 0.90 22.35 29.55 -169.99 -5.02 17.33 16 4 H -0.29 -7.17 7.11 56.52 0.40 -6.76 16 5 H -0.29 -7.42 7.11 56.52 0.40 -7.01 16 6 H -0.28 -6.95 7.11 56.52 0.40 -6.55 16 7 C -0.24 -6.15 8.52 -15.06 -0.13 -6.28 16 8 H 0.07 1.79 7.27 -52.48 -0.38 1.41 16 9 N -0.71 -16.15 4.53 -46.19 -0.21 -16.36 16 10 C 0.19 3.41 0.68 -130.70 -0.09 3.32 16 11 C 0.11 2.06 4.04 -4.04 -0.02 2.04 16 12 N -0.67 -12.12 5.22 -61.23 -0.32 -12.44 16 13 C 0.57 9.96 7.81 -12.29 -0.10 9.86 16 14 O -0.55 -10.40 16.39 5.32 0.09 -10.31 16 15 C 0.02 0.35 6.83 -82.85 -0.57 -0.22 16 16 C -0.05 -0.59 9.72 -38.86 -0.38 -0.97 16 17 C -0.14 -1.36 10.14 -39.11 -0.40 -1.76 16 18 C 0.27 3.11 7.85 -16.78 -0.13 2.98 16 19 O -0.47 -4.30 13.56 -18.26 -0.25 -4.55 16 20 N -0.25 -3.89 11.54 30.54 0.35 -3.54 16 21 N -0.17 -2.87 10.73 33.32 0.36 -2.51 16 22 C -0.12 -1.93 5.72 -25.07 -0.14 -2.07 16 23 C -0.12 -1.72 6.91 -24.74 -0.17 -1.89 16 24 C -0.12 -1.73 6.83 -25.07 -0.17 -1.90 16 25 C -0.13 -2.22 5.93 -25.61 -0.15 -2.37 16 26 H 0.25 7.35 8.31 -40.82 -0.34 7.01 16 27 H 0.39 9.48 7.45 -40.82 -0.30 9.18 16 28 H 0.07 1.38 7.46 -51.93 -0.39 0.99 16 29 H 0.06 0.99 8.04 -51.93 -0.42 0.58 16 30 H 0.42 7.79 7.34 -40.82 -0.30 7.49 16 31 H 0.17 1.63 7.71 -52.48 -0.40 1.22 16 32 H 0.16 0.91 8.06 -52.49 -0.42 0.48 16 33 H 0.41 1.38 9.06 45.56 0.41 1.79 16 34 H 0.06 0.89 7.79 -51.93 -0.40 0.49 16 35 H 0.07 1.11 7.72 -51.93 -0.40 0.71 16 36 H 0.07 1.11 8.14 -51.93 -0.42 0.69 16 37 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 38 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 39 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 40 H 0.08 1.67 7.36 -51.93 -0.38 1.29 16 41 H 0.05 0.83 7.67 -51.93 -0.40 0.43 16 LS Contribution 346.19 15.07 5.22 5.22 Total: -1.00 -32.52 346.19 -6.21 -38.73 By element: Atomic # 1 Polarization: 18.97 SS G_CDS: -4.62 Total: 14.36 kcal Atomic # 6 Polarization: 3.02 SS G_CDS: -2.53 Total: 0.48 kcal Atomic # 7 Polarization: -62.16 SS G_CDS: 0.91 Total: -61.26 kcal Atomic # 8 Polarization: -14.70 SS G_CDS: -0.16 Total: -14.86 kcal Atomic # 14 Polarization: 22.35 SS G_CDS: -5.02 Total: 17.33 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -32.52 -6.21 -38.73 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753660756.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.316 kcal (2) G-P(sol) polarization free energy of solvation -32.523 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.206 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.212 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.735 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.419 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds