Wall clock time and date at job start Tue Mar 31 2020 04:17:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 N 1.31916 * 119.04333 * 2 1 4 4 C 1.32176 * 121.03877 * 180.02562 * 3 2 1 5 5 C 1.38805 * 119.14584 * 0.28191 * 4 3 2 6 6 C 1.39498 * 118.26001 * 359.45827 * 5 4 3 7 7 C 1.48453 * 120.54697 * 180.26782 * 6 5 4 8 8 O 1.21481 * 120.00143 * 0.27345 * 7 6 5 9 9 N 1.34783 * 119.99950 * 180.27674 * 7 6 5 10 10 C 1.46497 * 120.00236 * 179.97438 * 9 7 6 11 11 C 1.52992 * 109.47315 * 180.02562 * 10 9 7 12 12 H 1.09003 * 109.67799 * 300.51973 * 11 10 9 13 13 C 1.53296 * 109.68155 * 180.02562 * 11 10 9 14 14 O 1.42969 * 109.22379 * 187.97576 * 13 11 10 15 15 C 1.42964 * 114.16675 * 62.57292 * 14 13 11 16 16 C 1.53299 * 109.22311 * 297.42337 * 15 14 13 17 17 N 1.47149 * 109.68508 * 61.03867 * 11 10 9 18 18 C 1.36934 * 120.98028 * 350.23609 * 17 11 10 19 19 H 1.08003 * 119.99950 * 49.91806 * 18 17 11 20 20 C 1.38807 * 120.00150 * 229.91646 * 18 17 11 21 21 N 1.31621 * 120.00078 * 188.89493 * 20 18 17 22 22 Si 1.86799 * 120.00051 * 8.88935 * 20 18 17 23 23 H 1.48499 * 109.46966 * 84.31728 * 22 20 18 24 24 H 1.48502 * 109.47420 * 204.31508 * 22 20 18 25 25 H 1.48499 * 109.47081 * 324.31619 * 22 20 18 26 26 N 1.31552 * 119.04556 * 180.02562 * 2 1 3 27 27 H 1.08996 * 109.47353 * 90.00123 * 1 2 3 28 28 H 1.09000 * 109.46736 * 209.99872 * 1 2 3 29 29 H 1.09001 * 109.46909 * 329.99631 * 1 2 3 30 30 H 1.07998 * 120.42562 * 180.02562 * 4 3 2 31 31 H 1.07993 * 120.86911 * 179.70192 * 5 4 3 32 32 H 0.97003 * 119.99630 * 0.02562 * 9 7 6 33 33 H 1.09004 * 109.47151 * 300.00340 * 10 9 7 34 34 H 1.08998 * 109.46665 * 60.00074 * 10 9 7 35 35 H 1.08998 * 109.51128 * 307.89154 * 13 11 10 36 36 H 1.08994 * 109.51616 * 67.99944 * 13 11 10 37 37 H 1.08997 * 109.51077 * 57.34991 * 15 14 13 38 38 H 1.08997 * 109.50973 * 177.50075 * 15 14 13 39 39 H 1.09004 * 109.67822 * 172.03054 * 16 15 14 40 40 H 1.09001 * 109.68142 * 292.57830 * 16 15 14 41 41 H 0.96999 * 120.00352 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.1474 1.1533 0.0000 4 6 3.4683 1.1993 -0.0005 5 6 4.1861 0.0113 -0.0070 6 6 3.4761 -1.1894 -0.0012 7 6 4.1926 -2.4896 -0.0017 8 8 5.4071 -2.5139 -0.0023 9 7 3.4955 -3.6432 -0.0016 10 6 4.2024 -4.9263 -0.0028 11 6 3.1852 -6.0691 -0.0031 12 1 2.5522 -5.9973 0.8814 13 6 3.9201 -7.4144 -0.0036 14 8 2.9724 -8.4684 -0.1912 15 6 2.2815 -8.4185 -1.4418 16 6 1.4627 -7.1245 -1.5148 17 7 2.3540 -5.9925 -1.2149 18 6 2.4091 -4.9006 -2.0395 19 1 3.3640 -4.5298 -2.3816 20 6 1.2375 -4.2704 -2.4358 21 7 1.2738 -3.3357 -3.3618 22 14 -0.3906 -4.7489 -1.6550 23 1 -0.5690 -4.0010 -0.3845 24 1 -1.5012 -4.4186 -2.5838 25 1 -0.3960 -6.2074 -1.3758 26 7 2.1456 -1.1501 -0.0005 27 1 -0.3634 0.0000 -1.0276 28 1 -0.3633 -0.8900 0.5138 29 1 -0.3633 0.8900 0.5139 30 1 3.9825 2.1490 -0.0001 31 1 5.2661 0.0165 -0.0124 32 1 2.5256 -3.6238 -0.0016 33 1 4.8272 -4.9962 -0.8933 34 1 4.8285 -4.9969 0.8867 35 1 4.6483 -7.4311 -0.8144 36 1 4.4324 -7.5498 0.9488 37 1 3.0038 -8.4388 -2.2578 38 1 1.6144 -9.2765 -1.5236 39 1 1.0468 -7.0093 -2.5158 40 1 0.6556 -7.1590 -0.7831 41 1 0.4551 -2.8950 -3.6384 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001051247607.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:17:25 Heat of formation + Delta-G solvation = 9.020275 kcal Electronic energy + Delta-G solvation = -26227.412019 eV Core-core repulsion = 22530.143334 eV Total energy + Delta-G solvation = -3697.268686 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 306.148 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.96137 -39.20478 -38.38123 -35.46127 -33.82876 -33.43460 -33.00065 -31.73861 -30.96896 -28.32112 -27.57689 -26.29008 -24.55893 -23.33299 -22.86095 -22.02965 -20.25193 -19.91565 -17.89486 -17.35406 -16.64336 -15.98891 -15.81877 -15.35078 -15.22999 -15.02323 -14.86270 -14.69301 -14.35386 -14.01233 -13.93488 -13.50241 -13.18961 -12.85752 -12.63340 -12.47972 -12.25742 -12.11960 -11.88744 -11.58314 -10.90856 -10.84052 -10.79382 -10.73052 -10.55873 -10.24064 -9.98714 -9.88424 -9.55075 -9.31647 -9.22245 -8.99203 -8.58455 -8.28825 -6.70661 -6.07315 -3.72015 0.78028 1.12697 3.16745 3.29221 3.38331 3.42325 3.51889 4.05307 4.11856 4.21259 4.31434 4.44299 4.71174 4.87530 5.12334 5.15498 5.20982 5.44824 5.53492 5.55988 5.58918 5.67637 5.72255 5.83022 5.89899 5.93796 5.94929 6.02987 6.06700 6.12991 6.25881 6.42786 6.50723 6.61501 6.76043 6.98077 7.10522 7.61553 7.97096 8.07428 8.28509 8.31840 8.71854 8.79430 9.54697 10.00551 11.05036 Molecular weight = 306.15amu Principal moments of inertia in cm(-1) A = 0.015877 B = 0.005823 C = 0.004657 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1763.110921 B = 4807.630265 C = 6011.050521 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.085 4.085 2 C 0.317 3.683 3 N -0.514 5.514 4 C 0.146 3.854 5 C -0.185 4.185 6 C 0.152 3.848 7 C 0.563 3.437 8 O -0.552 6.552 9 N -0.659 5.659 10 C 0.137 3.863 11 C 0.123 3.877 12 H 0.045 0.955 13 C 0.056 3.944 14 O -0.389 6.389 15 C 0.042 3.958 16 C 0.102 3.898 17 N -0.605 5.605 18 C -0.276 4.276 19 H 0.075 0.925 20 C 0.056 3.944 21 N -0.893 5.893 22 Si 0.848 3.152 23 H -0.279 1.279 24 H -0.300 1.300 25 H -0.239 1.239 26 N -0.476 5.476 27 H 0.088 0.912 28 H 0.085 0.915 29 H 0.083 0.917 30 H 0.172 0.828 31 H 0.157 0.843 32 H 0.422 0.578 33 H 0.073 0.927 34 H 0.063 0.937 35 H 0.051 0.949 36 H 0.087 0.913 37 H 0.048 0.952 38 H 0.082 0.918 39 H 0.073 0.927 40 H 0.042 0.958 41 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.205 2.010 7.635 7.987 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.050 3.950 3 N -0.229 5.229 4 C -0.022 4.022 5 C -0.208 4.208 6 C 0.003 3.997 7 C 0.346 3.654 8 O -0.431 6.431 9 N -0.309 5.309 10 C 0.013 3.987 11 C 0.016 3.984 12 H 0.063 0.937 13 C -0.023 4.023 14 O -0.307 6.307 15 C -0.036 4.036 16 C -0.022 4.022 17 N -0.332 5.332 18 C -0.404 4.404 19 H 0.093 0.907 20 C -0.147 4.147 21 N -0.532 5.532 22 Si 0.676 3.324 23 H -0.205 1.205 24 H -0.227 1.227 25 H -0.164 1.164 26 N -0.193 5.193 27 H 0.107 0.893 28 H 0.104 0.896 29 H 0.102 0.898 30 H 0.189 0.811 31 H 0.174 0.826 32 H 0.262 0.738 33 H 0.091 0.909 34 H 0.081 0.919 35 H 0.070 0.930 36 H 0.105 0.895 37 H 0.066 0.934 38 H 0.100 0.900 39 H 0.092 0.908 40 H 0.060 0.940 41 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 0.921 1.902 7.646 7.933 hybrid contribution -0.458 0.213 -0.215 0.549 sum 0.463 2.115 7.432 7.741 Atomic orbital electron populations 1.20574 0.85700 1.03812 1.04259 1.23170 0.98179 0.83022 0.90645 1.68156 1.10404 1.30562 1.13788 1.23220 0.89533 0.98384 0.91044 1.22884 1.03571 0.93151 1.01199 1.21732 0.89774 0.94949 0.93246 1.17699 0.86344 0.83188 0.78142 1.90717 1.12793 1.87138 1.52489 1.45776 1.12132 1.04038 1.68954 1.21191 0.94269 0.81947 1.01329 1.21564 0.92696 0.92824 0.91285 0.93721 1.22878 0.90839 0.87590 1.00991 1.87823 1.55999 1.48777 1.38151 1.23157 0.95678 0.99093 0.85647 1.22372 0.92732 0.86921 1.00212 1.44328 1.48092 1.17491 1.23301 1.18582 0.94043 1.04223 1.23550 0.90714 1.25687 0.98208 0.94464 0.96385 1.69779 1.28115 1.25744 1.29601 0.87630 0.83854 0.81396 0.79476 1.20528 1.22722 1.16356 1.68275 1.08796 1.30689 1.11543 0.89345 0.89617 0.89795 0.81076 0.82562 0.73809 0.90895 0.91888 0.93046 0.89492 0.93358 0.89972 0.90824 0.94027 0.92671 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.20 10.31 36.00 0.37 -0.83 16 2 C 0.32 5.46 7.64 -157.30 -1.20 4.26 16 3 N -0.51 -8.08 10.32 -10.74 -0.11 -8.19 16 4 C 0.15 1.98 11.31 -17.19 -0.19 1.79 16 5 C -0.19 -2.87 9.72 -38.90 -0.38 -3.25 16 6 C 0.15 2.88 6.79 -82.64 -0.56 2.32 16 7 C 0.56 11.53 7.83 -12.05 -0.09 11.44 16 8 O -0.55 -11.90 16.43 5.38 0.09 -11.81 16 9 N -0.66 -13.40 4.12 -61.06 -0.25 -13.66 16 10 C 0.14 2.52 4.51 -4.05 -0.02 2.50 16 11 C 0.12 2.25 3.20 -67.43 -0.22 2.04 16 12 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 13 C 0.06 0.90 6.29 37.31 0.23 1.14 16 14 O -0.39 -6.83 10.74 -35.23 -0.38 -7.21 16 15 C 0.04 0.72 6.99 37.31 0.26 0.98 16 16 C 0.10 2.04 4.27 -3.52 -0.02 2.02 16 17 N -0.60 -12.97 2.45 -164.29 -0.40 -13.37 16 18 C -0.28 -6.90 6.65 -15.06 -0.10 -7.00 16 19 H 0.08 2.14 7.11 -52.48 -0.37 1.77 16 20 C 0.06 1.46 5.35 -17.43 -0.09 1.37 16 21 N -0.89 -25.37 13.97 55.49 0.78 -24.60 16 22 Si 0.85 19.67 26.73 -169.99 -4.54 15.12 16 23 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 24 H -0.30 -7.26 7.11 56.52 0.40 -6.86 16 25 H -0.24 -5.10 3.87 56.52 0.22 -4.88 16 26 N -0.48 -9.27 9.60 -7.32 -0.07 -9.34 16 27 H 0.09 1.25 8.14 -51.93 -0.42 0.83 16 28 H 0.09 1.21 8.14 -51.93 -0.42 0.78 16 29 H 0.08 0.96 8.14 -51.93 -0.42 0.54 16 30 H 0.17 1.56 8.06 -52.49 -0.42 1.13 16 31 H 0.16 2.14 7.74 -52.49 -0.41 1.74 16 32 H 0.42 9.20 6.72 -40.82 -0.27 8.93 16 33 H 0.07 1.47 7.56 -51.93 -0.39 1.08 16 34 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 35 H 0.05 0.84 8.14 -51.93 -0.42 0.41 16 36 H 0.09 1.16 8.14 -51.93 -0.42 0.74 16 37 H 0.05 0.83 8.14 -51.93 -0.42 0.40 16 38 H 0.08 1.20 8.14 -51.93 -0.42 0.77 16 39 H 0.07 1.53 6.86 -51.93 -0.36 1.18 16 40 H 0.04 0.85 6.13 -51.93 -0.32 0.53 16 41 H 0.26 7.25 8.31 -40.82 -0.34 6.91 16 LS Contribution 335.04 15.07 5.05 5.05 Total: -1.00 -30.86 335.04 -7.52 -38.37 By element: Atomic # 1 Polarization: 16.52 SS G_CDS: -5.67 Total: 10.86 kcal Atomic # 6 Polarization: 20.77 SS G_CDS: -2.01 Total: 18.77 kcal Atomic # 7 Polarization: -69.10 SS G_CDS: -0.06 Total: -69.15 kcal Atomic # 8 Polarization: -18.72 SS G_CDS: -0.29 Total: -19.01 kcal Atomic # 14 Polarization: 19.67 SS G_CDS: -4.54 Total: 15.12 kcal Total LS contribution 5.05 Total: 5.05 kcal Total: -30.86 -7.52 -38.37 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001051247607.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.392 kcal (2) G-P(sol) polarization free energy of solvation -30.855 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.536 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.516 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.371 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.020 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds