Wall clock time and date at job start Tue Mar 31 2020 03:46:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50691 * 1 3 3 C 1.38546 * 120.01749 * 2 1 4 4 C 1.40080 * 117.81895 * 180.25985 * 3 2 1 5 5 C 1.48133 * 121.14566 * 179.73841 * 4 3 2 6 6 O 1.21517 * 119.99990 * 359.72791 * 5 4 3 7 7 N 1.34777 * 120.00068 * 179.72142 * 5 4 3 8 8 C 1.46504 * 120.00322 * 180.02562 * 7 5 4 9 9 H 1.08993 * 109.45739 * 325.03256 * 8 7 5 10 10 C 1.53034 * 109.45561 * 85.00412 * 8 7 5 11 11 C 1.53197 * 109.30828 * 181.38979 * 10 8 7 12 12 N 1.46928 * 108.77423 * 305.35851 * 11 10 8 13 13 C 1.36929 * 120.63162 * 233.59085 * 12 11 10 14 14 H 1.08000 * 120.00027 * 152.02104 * 13 12 11 15 15 C 1.38816 * 120.00312 * 332.01318 * 13 12 11 16 16 N 1.31616 * 119.99645 * 342.88088 * 15 13 12 17 17 Si 1.86797 * 119.99987 * 162.59532 * 15 13 12 18 18 H 1.48500 * 109.47281 * 266.51043 * 17 15 13 19 19 H 1.48497 * 109.47253 * 26.51425 * 17 15 13 20 20 H 1.48501 * 109.46944 * 146.51417 * 17 15 13 21 21 C 1.46925 * 118.73362 * 53.86492 * 12 11 10 22 22 C 1.53040 * 109.45782 * 205.07251 * 8 7 5 23 23 H 1.08999 * 109.49541 * 298.59286 * 22 8 7 24 24 O 1.42891 * 109.50079 * 58.66533 * 22 8 7 25 25 C 1.39764 * 117.70620 * 359.47546 * 4 3 2 26 26 N 1.31893 * 119.65713 * 0.27056 * 25 4 3 27 27 N 1.28283 * 122.32830 * 359.97438 * 26 25 4 28 28 H 1.08996 * 109.47243 * 270.28071 * 1 2 3 29 29 H 1.09003 * 109.47547 * 30.27788 * 1 2 3 30 30 H 1.09007 * 109.47214 * 150.27797 * 1 2 3 31 31 H 1.08000 * 121.09068 * 0.02562 * 3 2 1 32 32 H 0.97003 * 120.00050 * 0.02562 * 7 5 4 33 33 H 1.08996 * 109.50256 * 61.43858 * 10 8 7 34 34 H 1.09007 * 109.52654 * 301.34780 * 10 8 7 35 35 H 1.09008 * 109.58380 * 185.57989 * 11 10 8 36 36 H 1.08991 * 109.70714 * 65.22210 * 11 10 8 37 37 H 0.97003 * 120.00029 * 179.72447 * 16 15 13 38 38 H 1.09001 * 109.58930 * 65.92608 * 21 12 11 39 39 H 1.09003 * 109.58076 * 186.35083 * 21 12 11 40 40 H 0.96706 * 113.99985 * 179.97438 * 24 22 8 41 41 H 1.07999 * 120.17239 * 180.24222 * 25 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.2000 1.1996 0.0000 4 6 3.5998 1.1459 -0.0056 5 6 4.4140 2.3834 -0.0118 6 8 3.8688 3.4694 -0.0170 7 7 5.7595 2.3048 -0.0115 8 6 6.5648 3.5286 -0.0170 9 1 6.0608 4.2922 -0.6094 10 6 6.7400 4.0300 1.4182 11 6 7.5530 5.3284 1.4055 12 7 8.8147 5.0893 0.6916 13 6 10.0155 5.3894 1.2774 14 1 10.9032 4.8398 1.0014 15 6 10.0918 6.4002 2.2258 16 7 9.1221 7.2847 2.3242 17 14 11.5668 6.5003 3.3675 18 1 11.2652 5.7795 4.6303 19 1 12.7441 5.8773 2.7110 20 1 11.8638 7.9237 3.6689 21 6 8.7632 4.5279 -0.6652 22 6 7.9368 3.2333 -0.6272 23 1 8.4514 2.4874 -0.0214 24 8 7.7707 2.7362 -1.9565 25 6 4.2017 -0.1155 0.0005 26 7 3.4483 -1.1981 0.0057 27 7 2.1667 -1.1420 0.0060 28 1 -0.3633 0.0050 1.0276 29 1 -0.3634 0.8875 -0.5181 30 1 -0.3634 -0.8925 -0.5095 31 1 1.6782 2.1452 0.0004 32 1 6.1947 1.4379 -0.0075 33 1 7.2662 3.2771 2.0050 34 1 5.7616 4.2178 1.8606 35 1 7.7653 5.6366 2.4293 36 1 6.9885 6.1105 0.8980 37 1 9.1735 7.9887 2.9896 38 1 8.2942 5.2443 -1.3396 39 1 9.7742 4.3078 -1.0081 40 1 8.6016 2.5277 -2.4052 41 1 5.2781 -0.2033 0.0004 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001090220249.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:46:27 Heat of formation + Delta-G solvation = -5.577480 kcal Electronic energy + Delta-G solvation = -25029.429294 eV Core-core repulsion = 21331.527603 eV Total energy + Delta-G solvation = -3697.901692 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 306.148 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.50351 -39.77566 -38.03810 -35.49862 -34.75618 -34.17040 -33.51191 -31.93559 -30.09205 -28.66575 -28.64375 -25.99257 -24.66674 -24.02684 -22.50316 -21.92300 -20.59800 -19.67538 -18.23822 -17.82503 -17.15602 -16.65549 -16.42957 -15.85544 -15.67690 -15.10345 -14.79137 -14.65040 -14.08816 -13.95108 -13.84031 -13.56251 -13.32752 -13.24572 -12.88638 -12.76552 -12.39779 -12.20304 -11.67365 -11.31440 -11.17670 -10.94434 -10.83599 -10.53705 -10.48435 -10.42736 -10.32280 -10.08473 -10.01656 -9.89420 -9.81672 -9.55379 -8.96501 -8.54145 -6.84957 -5.91303 -3.36356 0.07407 0.52361 2.62792 2.92237 3.30710 3.37619 3.37839 3.39319 3.62355 4.01258 4.15220 4.27341 4.37117 4.46355 4.50723 4.77549 5.01492 5.15436 5.18138 5.25337 5.37650 5.41468 5.42856 5.47678 5.61773 5.64955 5.83046 5.85617 5.98259 6.12373 6.37696 6.39847 6.55596 6.65583 6.68866 7.19376 7.41135 7.52986 7.67116 7.82120 8.06984 8.30885 8.33355 9.06347 9.68449 10.24052 11.17147 Molecular weight = 306.15amu Principal moments of inertia in cm(-1) A = 0.026376 B = 0.003033 C = 0.002937 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1061.317812 B = 9228.890740 C = 9530.864611 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.101 4.101 2 C 0.066 3.934 3 C -0.061 4.061 4 C -0.121 4.121 5 C 0.558 3.442 6 O -0.525 6.525 7 N -0.703 5.703 8 C 0.162 3.838 9 H 0.092 0.908 10 C -0.147 4.147 11 C 0.171 3.829 12 N -0.588 5.588 13 C -0.261 4.261 14 H 0.068 0.932 15 C 0.006 3.994 16 N -0.899 5.899 17 Si 0.905 3.095 18 H -0.286 1.286 19 H -0.278 1.278 20 H -0.290 1.290 21 C 0.121 3.879 22 C 0.079 3.921 23 H 0.058 0.942 24 O -0.572 6.572 25 C 0.063 3.937 26 N -0.238 5.238 27 N -0.233 5.233 28 H 0.086 0.914 29 H 0.082 0.918 30 H 0.084 0.916 31 H 0.163 0.837 32 H 0.397 0.603 33 H 0.060 0.940 34 H 0.063 0.937 35 H 0.094 0.906 36 H 0.025 0.975 37 H 0.256 0.744 38 H 0.030 0.970 39 H 0.062 0.938 40 H 0.376 0.624 41 H 0.175 0.825 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.475 -13.296 -4.964 18.251 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C -0.078 4.078 3 C -0.091 4.091 4 C -0.135 4.135 5 C 0.342 3.658 6 O -0.401 6.401 7 N -0.352 5.352 8 C 0.059 3.941 9 H 0.110 0.890 10 C -0.188 4.188 11 C 0.045 3.955 12 N -0.312 5.312 13 C -0.391 4.391 14 H 0.086 0.914 15 C -0.194 4.194 16 N -0.542 5.542 17 Si 0.735 3.265 18 H -0.213 1.213 19 H -0.203 1.203 20 H -0.217 1.217 21 C -0.007 4.007 22 C 0.018 3.982 23 H 0.076 0.924 24 O -0.377 6.377 25 C -0.103 4.103 26 N -0.078 5.078 27 N -0.077 5.077 28 H 0.105 0.895 29 H 0.101 0.899 30 H 0.103 0.897 31 H 0.181 0.819 32 H 0.232 0.768 33 H 0.079 0.921 34 H 0.082 0.918 35 H 0.112 0.888 36 H 0.043 0.957 37 H 0.066 0.934 38 H 0.048 0.952 39 H 0.080 0.920 40 H 0.222 0.778 41 H 0.192 0.808 Dipole moment (debyes) X Y Z Total from point charges -12.519 -13.912 -4.710 19.299 hybrid contribution 1.766 1.235 0.499 2.212 sum -10.753 -12.678 -4.211 17.149 Atomic orbital electron populations 1.20719 0.86838 1.04394 1.03970 1.22961 0.99439 0.89877 0.95553 1.22526 0.93218 1.00719 0.92603 1.21388 0.95376 0.95496 1.01227 1.17858 0.82585 0.87756 0.77576 1.90811 1.71741 1.28256 1.49285 1.46033 1.05235 1.10755 1.73215 1.21137 0.89343 0.85673 0.97967 0.89028 1.22627 1.00925 1.01516 0.93698 1.20833 0.84611 0.90271 0.99806 1.44069 1.03166 1.73643 1.10304 1.19176 0.87287 1.12814 1.19785 0.91437 1.25094 0.97867 0.94935 1.01458 1.70032 1.33730 1.14888 1.35541 0.86241 0.82176 0.76980 0.81127 1.21334 1.20328 1.21662 1.21615 0.97591 0.92224 0.89247 1.22881 0.95375 0.97496 0.82449 0.92360 1.86467 1.35522 1.86962 1.28714 1.24527 1.02551 0.88833 0.94344 1.73041 0.99192 1.26811 1.08779 1.72827 1.01926 1.24997 1.07970 0.89517 0.89872 0.89664 0.81914 0.76836 0.92131 0.91838 0.88778 0.95688 0.93381 0.95191 0.91987 0.77764 0.80817 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.62 10.19 36.00 0.37 -0.25 16 2 C 0.07 0.66 6.86 -82.46 -0.57 0.10 16 3 C -0.06 -0.65 9.44 -38.78 -0.37 -1.01 16 4 C -0.12 -1.44 5.92 -104.57 -0.62 -2.06 16 5 C 0.56 8.11 7.77 -12.20 -0.09 8.02 16 6 O -0.52 -9.42 16.15 5.35 0.09 -9.33 16 7 N -0.70 -9.65 4.88 -54.62 -0.27 -9.92 16 8 C 0.16 2.72 2.12 -67.89 -0.14 2.58 16 9 H 0.09 1.78 7.57 -51.93 -0.39 1.38 16 10 C -0.15 -2.73 5.65 -26.61 -0.15 -2.88 16 11 C 0.17 3.93 5.30 -3.71 -0.02 3.91 16 12 N -0.59 -13.85 2.99 -172.05 -0.51 -14.36 16 13 C -0.26 -6.78 9.58 -15.06 -0.14 -6.93 16 14 H 0.07 1.71 7.89 -52.49 -0.41 1.29 16 15 C 0.01 0.16 4.91 -17.43 -0.09 0.07 16 16 N -0.90 -25.25 11.20 55.49 0.62 -24.63 16 17 Si 0.91 20.86 29.59 -169.99 -5.03 15.83 16 18 H -0.29 -6.60 7.11 56.52 0.40 -6.20 16 19 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 20 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 21 C 0.12 2.34 6.17 -3.48 -0.02 2.32 16 22 C 0.08 1.25 3.16 -26.38 -0.08 1.17 16 23 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 24 O -0.57 -7.90 13.16 -35.23 -0.46 -8.37 16 25 C 0.06 0.68 10.84 -16.96 -0.18 0.50 16 26 N -0.24 -3.00 11.49 30.78 0.35 -2.64 16 27 N -0.23 -2.87 11.40 33.57 0.38 -2.48 16 28 H 0.09 0.44 8.14 -51.93 -0.42 0.02 16 29 H 0.08 0.37 8.09 -51.93 -0.42 -0.05 16 30 H 0.08 0.49 8.14 -51.92 -0.42 0.06 16 31 H 0.16 1.53 7.80 -52.49 -0.41 1.12 16 32 H 0.40 4.33 6.76 -40.82 -0.28 4.06 16 33 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 34 H 0.06 1.17 8.14 -51.92 -0.42 0.75 16 35 H 0.09 2.42 6.05 -51.92 -0.31 2.10 16 36 H 0.02 0.62 8.14 -51.93 -0.42 0.19 16 37 H 0.26 6.97 8.31 -40.82 -0.34 6.63 16 38 H 0.03 0.62 8.14 -51.93 -0.42 0.19 16 39 H 0.06 1.13 7.93 -51.93 -0.41 0.72 16 40 H 0.38 3.65 9.09 45.56 0.41 4.06 16 41 H 0.17 1.39 6.54 -52.49 -0.34 1.05 16 LS Contribution 343.10 15.07 5.17 5.17 Total: -1.00 -32.52 343.10 -6.43 -38.95 By element: Atomic # 1 Polarization: 10.93 SS G_CDS: -4.66 Total: 6.27 kcal Atomic # 6 Polarization: 7.62 SS G_CDS: -2.11 Total: 5.51 kcal Atomic # 7 Polarization: -54.62 SS G_CDS: 0.58 Total: -54.04 kcal Atomic # 8 Polarization: -17.32 SS G_CDS: -0.38 Total: -17.70 kcal Atomic # 14 Polarization: 20.86 SS G_CDS: -5.03 Total: 15.83 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -32.52 -6.43 -38.95 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001090220249.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.377 kcal (2) G-P(sol) polarization free energy of solvation -32.523 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.854 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.431 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.954 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.577 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds