Wall clock time and date at job start Tue Mar 31 2020 03:46:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50691 * 1 3 3 C 1.38546 * 120.01749 * 2 1 4 4 C 1.40080 * 117.81895 * 180.25985 * 3 2 1 5 5 C 1.48133 * 121.14566 * 179.73841 * 4 3 2 6 6 O 1.21517 * 119.99990 * 359.72791 * 5 4 3 7 7 N 1.34777 * 120.00068 * 179.72142 * 5 4 3 8 8 C 1.46504 * 120.00322 * 180.02562 * 7 5 4 9 9 H 1.08993 * 109.45739 * 325.03256 * 8 7 5 10 10 C 1.53034 * 109.45561 * 85.00412 * 8 7 5 11 11 C 1.53197 * 109.30828 * 181.38979 * 10 8 7 12 12 N 1.46928 * 108.77423 * 305.35851 * 11 10 8 13 13 C 1.36929 * 120.63162 * 233.59085 * 12 11 10 14 14 H 1.08000 * 120.00027 * 152.02104 * 13 12 11 15 15 C 1.38816 * 120.00312 * 332.01318 * 13 12 11 16 16 N 1.31616 * 119.99645 * 342.88088 * 15 13 12 17 17 Si 1.86797 * 119.99987 * 162.59532 * 15 13 12 18 18 H 1.48500 * 109.47281 * 266.51043 * 17 15 13 19 19 H 1.48497 * 109.47253 * 26.51425 * 17 15 13 20 20 H 1.48501 * 109.46944 * 146.51417 * 17 15 13 21 21 C 1.46925 * 118.73362 * 53.86492 * 12 11 10 22 22 C 1.53040 * 109.45782 * 205.07251 * 8 7 5 23 23 H 1.08999 * 109.49541 * 298.59286 * 22 8 7 24 24 O 1.42891 * 109.50079 * 58.66533 * 22 8 7 25 25 C 1.39764 * 117.70620 * 359.47546 * 4 3 2 26 26 N 1.31893 * 119.65713 * 0.27056 * 25 4 3 27 27 N 1.28283 * 122.32830 * 359.97438 * 26 25 4 28 28 H 1.08996 * 109.47243 * 270.28071 * 1 2 3 29 29 H 1.09003 * 109.47547 * 30.27788 * 1 2 3 30 30 H 1.09007 * 109.47214 * 150.27797 * 1 2 3 31 31 H 1.08000 * 121.09068 * 0.02562 * 3 2 1 32 32 H 0.97003 * 120.00050 * 0.02562 * 7 5 4 33 33 H 1.08996 * 109.50256 * 61.43858 * 10 8 7 34 34 H 1.09007 * 109.52654 * 301.34780 * 10 8 7 35 35 H 1.09008 * 109.58380 * 185.57989 * 11 10 8 36 36 H 1.08991 * 109.70714 * 65.22210 * 11 10 8 37 37 H 0.97003 * 120.00029 * 179.72447 * 16 15 13 38 38 H 1.09001 * 109.58930 * 65.92608 * 21 12 11 39 39 H 1.09003 * 109.58076 * 186.35083 * 21 12 11 40 40 H 0.96706 * 113.99985 * 179.97438 * 24 22 8 41 41 H 1.07999 * 120.17239 * 180.24222 * 25 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.2000 1.1996 0.0000 4 6 3.5998 1.1459 -0.0056 5 6 4.4140 2.3834 -0.0118 6 8 3.8688 3.4694 -0.0170 7 7 5.7595 2.3048 -0.0115 8 6 6.5648 3.5286 -0.0170 9 1 6.0608 4.2922 -0.6094 10 6 6.7400 4.0300 1.4182 11 6 7.5530 5.3284 1.4055 12 7 8.8147 5.0893 0.6916 13 6 10.0155 5.3894 1.2774 14 1 10.9032 4.8398 1.0014 15 6 10.0918 6.4002 2.2258 16 7 9.1221 7.2847 2.3242 17 14 11.5668 6.5003 3.3675 18 1 11.2652 5.7795 4.6303 19 1 12.7441 5.8773 2.7110 20 1 11.8638 7.9237 3.6689 21 6 8.7632 4.5279 -0.6652 22 6 7.9368 3.2333 -0.6272 23 1 8.4514 2.4874 -0.0214 24 8 7.7707 2.7362 -1.9565 25 6 4.2017 -0.1155 0.0005 26 7 3.4483 -1.1981 0.0057 27 7 2.1667 -1.1420 0.0060 28 1 -0.3633 0.0050 1.0276 29 1 -0.3634 0.8875 -0.5181 30 1 -0.3634 -0.8925 -0.5095 31 1 1.6782 2.1452 0.0004 32 1 6.1947 1.4379 -0.0075 33 1 7.2662 3.2771 2.0050 34 1 5.7616 4.2178 1.8606 35 1 7.7653 5.6366 2.4293 36 1 6.9885 6.1105 0.8980 37 1 9.1735 7.9887 2.9896 38 1 8.2942 5.2443 -1.3396 39 1 9.7742 4.3078 -1.0081 40 1 8.6016 2.5277 -2.4052 41 1 5.2781 -0.2033 0.0004 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001090220249.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:46:27 Heat of formation + Delta-G solvation = -31.228526 kcal Electronic energy + Delta-G solvation = -25030.541607 eV Core-core repulsion = 21331.527603 eV Total energy + Delta-G solvation = -3699.014005 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 306.148 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -42.40274 -40.99811 -39.42548 -36.98357 -36.00490 -35.03289 -34.55175 -33.63270 -31.70903 -30.19873 -29.31209 -27.45999 -25.97949 -24.93460 -24.01218 -23.48492 -21.77236 -21.19758 -19.35284 -18.90882 -18.56447 -17.98671 -17.43426 -17.13965 -16.76548 -16.60856 -16.05257 -15.80142 -15.68554 -15.34406 -14.98451 -14.76168 -14.49785 -14.45569 -13.90232 -13.82854 -13.64419 -13.28934 -13.24566 -12.98904 -12.74601 -12.41334 -12.15638 -12.10892 -12.06104 -11.91220 -11.71744 -11.41366 -11.30487 -11.07155 -10.85139 -10.75999 -10.58812 -10.18528 -8.77360 -7.91014 -5.38739 -0.83907 -0.26927 1.48391 1.50129 1.57083 1.58892 1.78614 2.46583 2.48819 2.87982 3.06447 3.17577 3.25926 3.34901 3.44304 3.61385 3.71220 3.84536 4.03047 4.10076 4.19545 4.31821 4.38575 4.50697 4.61922 4.65478 4.74474 4.82289 4.82963 4.90389 4.98548 5.00151 5.11903 5.25124 5.30384 5.37343 5.60374 5.65927 6.30557 6.33593 6.87476 6.96274 7.09361 7.49110 7.77551 8.29728 9.16041 Molecular weight = 306.15amu Principal moments of inertia in cm(-1) A = 0.026376 B = 0.003033 C = 0.002937 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1061.317812 B = 9228.890740 C = 9530.864611 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.100 4.100 2 C 0.071 3.929 3 C -0.058 4.058 4 C -0.131 4.131 5 C 0.561 3.439 6 O -0.564 6.564 7 N -0.690 5.690 8 C 0.170 3.830 9 H 0.063 0.937 10 C -0.130 4.130 11 C 0.179 3.821 12 N -0.604 5.604 13 C -0.264 4.264 14 H 0.077 0.923 15 C -0.050 4.050 16 N -0.936 5.936 17 Si 0.969 3.031 18 H -0.286 1.286 19 H -0.264 1.264 20 H -0.299 1.299 21 C 0.117 3.883 22 C 0.101 3.899 23 H 0.078 0.922 24 O -0.571 6.571 25 C 0.070 3.930 26 N -0.261 5.261 27 N -0.255 5.255 28 H 0.101 0.899 29 H 0.102 0.898 30 H 0.090 0.910 31 H 0.174 0.826 32 H 0.414 0.586 33 H 0.072 0.928 34 H 0.060 0.940 35 H 0.062 0.938 36 H -0.007 1.007 37 H 0.251 0.749 38 H 0.013 0.987 39 H 0.076 0.924 40 H 0.397 0.603 41 H 0.201 0.799 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.337 -15.666 -5.433 20.086 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C -0.074 4.074 3 C -0.088 4.088 4 C -0.145 4.145 5 C 0.347 3.653 6 O -0.443 6.443 7 N -0.341 5.341 8 C 0.065 3.935 9 H 0.081 0.919 10 C -0.170 4.170 11 C 0.053 3.947 12 N -0.328 5.328 13 C -0.394 4.394 14 H 0.095 0.905 15 C -0.246 4.246 16 N -0.582 5.582 17 Si 0.797 3.203 18 H -0.212 1.212 19 H -0.188 1.188 20 H -0.226 1.226 21 C -0.010 4.010 22 C 0.040 3.960 23 H 0.096 0.904 24 O -0.379 6.379 25 C -0.095 4.095 26 N -0.100 5.100 27 N -0.098 5.098 28 H 0.119 0.881 29 H 0.120 0.880 30 H 0.109 0.891 31 H 0.191 0.809 32 H 0.252 0.748 33 H 0.091 0.909 34 H 0.079 0.921 35 H 0.081 0.919 36 H 0.011 0.989 37 H 0.060 0.940 38 H 0.031 0.969 39 H 0.095 0.905 40 H 0.248 0.752 41 H 0.218 0.782 Dipole moment (debyes) X Y Z Total from point charges -12.355 -16.369 -5.220 21.162 hybrid contribution 1.663 1.979 0.546 2.642 sum -10.693 -14.390 -4.674 18.527 Atomic orbital electron populations 1.20881 0.84117 1.05630 1.05216 1.23456 1.01083 0.88812 0.94072 1.22778 0.92976 1.01555 0.91540 1.21182 0.95677 0.94607 1.03080 1.18176 0.82666 0.88055 0.76385 1.90799 1.72448 1.29980 1.51076 1.45745 1.04973 1.10505 1.72837 1.20755 0.90255 0.86304 0.96166 0.91921 1.22341 0.99914 0.99394 0.95396 1.20551 0.84952 0.91722 0.97500 1.44281 1.02560 1.73884 1.12099 1.19572 0.88303 1.12146 1.19376 0.90503 1.25872 1.00483 0.94979 1.03235 1.70197 1.35850 1.15763 1.36341 0.85226 0.79623 0.76261 0.79153 1.21250 1.18810 1.22617 1.21789 0.99095 0.93331 0.86749 1.22410 0.93781 0.95902 0.83876 0.90425 1.86443 1.37312 1.86460 1.27652 1.24836 1.03666 0.87838 0.93198 1.73000 0.99633 1.27544 1.09807 1.72768 1.02122 1.26212 1.08711 0.88098 0.87952 0.89108 0.80904 0.74766 0.90913 0.92138 0.91930 0.98883 0.94042 0.96894 0.90536 0.75219 0.78197 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.98 10.19 71.23 0.73 -0.26 16 2 C 0.07 1.28 6.86 42.62 0.29 1.58 16 3 C -0.06 -1.15 9.44 22.79 0.22 -0.93 16 4 C -0.13 -2.92 5.92 -19.83 -0.12 -3.04 16 5 C 0.56 15.67 7.77 86.87 0.67 16.34 16 6 O -0.56 -20.22 16.15 -3.77 -0.06 -20.28 16 7 N -0.69 -17.64 4.88 -445.02 -2.17 -19.81 16 8 C 0.17 5.55 2.12 45.02 0.10 5.64 16 9 H 0.06 2.46 7.57 -2.39 -0.02 2.44 16 10 C -0.13 -4.82 5.65 30.67 0.17 -4.65 16 11 C 0.18 8.51 5.30 86.36 0.46 8.97 16 12 N -0.60 -28.57 2.99 -698.23 -2.09 -30.66 16 13 C -0.26 -13.64 9.58 84.04 0.81 -12.84 16 14 H 0.08 3.76 7.89 -2.91 -0.02 3.74 16 15 C -0.05 -2.69 4.91 84.86 0.42 -2.27 16 16 N -0.94 -54.39 11.20 21.65 0.24 -54.15 16 17 Si 0.97 43.12 29.59 68.60 2.03 45.15 16 18 H -0.29 -12.56 7.11 99.48 0.71 -11.85 16 19 H -0.26 -10.99 7.11 99.48 0.71 -10.29 16 20 H -0.30 -13.63 7.11 99.48 0.71 -12.92 16 21 C 0.12 4.41 6.17 86.51 0.53 4.94 16 22 C 0.10 2.98 3.16 30.82 0.10 3.08 16 23 H 0.08 2.07 8.14 -2.39 -0.02 2.05 16 24 O -0.57 -13.99 13.16 -148.98 -1.96 -15.95 16 25 C 0.07 1.38 10.84 85.05 0.92 2.30 16 26 N -0.26 -6.12 11.49 -56.53 -0.65 -6.77 16 27 N -0.26 -5.87 11.40 -47.69 -0.54 -6.41 16 28 H 0.10 0.75 8.14 -2.39 -0.02 0.73 16 29 H 0.10 0.63 8.09 -2.39 -0.02 0.61 16 30 H 0.09 0.82 8.14 -2.38 -0.02 0.81 16 31 H 0.17 2.99 7.80 -2.91 -0.02 2.97 16 32 H 0.41 7.73 6.76 -92.71 -0.63 7.10 16 33 H 0.07 2.52 8.14 -2.39 -0.02 2.50 16 34 H 0.06 2.26 8.14 -2.38 -0.02 2.24 16 35 H 0.06 3.36 6.05 -2.38 -0.01 3.34 16 36 H -0.01 -0.37 8.14 -2.39 -0.02 -0.39 16 37 H 0.25 14.16 8.31 -92.71 -0.77 13.39 16 38 H 0.01 0.54 8.14 -2.39 -0.02 0.52 16 39 H 0.08 2.63 7.93 -2.39 -0.02 2.61 16 40 H 0.40 6.18 9.09 -74.05 -0.67 5.51 16 41 H 0.20 2.57 6.54 -2.91 -0.02 2.56 16 Total: -1.00 -72.22 343.10 -0.13 -72.34 By element: Atomic # 1 Polarization: 17.89 SS G_CDS: -0.22 Total: 17.67 kcal Atomic # 6 Polarization: 13.57 SS G_CDS: 5.29 Total: 18.87 kcal Atomic # 7 Polarization: -112.59 SS G_CDS: -5.21 Total: -117.79 kcal Atomic # 8 Polarization: -34.21 SS G_CDS: -2.02 Total: -36.23 kcal Atomic # 14 Polarization: 43.12 SS G_CDS: 2.03 Total: 45.15 kcal Total: -72.22 -0.13 -72.34 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001090220249.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.116 kcal (2) G-P(sol) polarization free energy of solvation -72.218 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.101 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.127 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.345 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.229 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds