Wall clock time and date at job start Tue Mar 31 2020 03:46:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 N 1.31921 * 120.17208 * 2 1 4 4 N 1.28278 * 122.32245 * 180.26982 * 3 2 1 5 5 C 1.31913 * 122.52060 * 359.72874 * 4 3 2 6 6 C 1.38508 * 119.96556 * 359.97438 * 5 4 3 7 7 C 1.39725 * 120.17011 * 179.73739 * 2 1 3 8 8 C 1.48135 * 121.14998 * 0.02562 * 7 2 1 9 9 O 1.21520 * 119.99431 * 354.29414 * 8 7 2 10 10 N 1.34769 * 120.00358 * 174.29153 * 8 7 2 11 11 C 1.46506 * 120.00187 * 180.02562 * 10 8 7 12 12 H 1.08996 * 109.45869 * 324.99989 * 11 10 8 13 13 C 1.53046 * 109.44696 * 84.96398 * 11 10 8 14 14 C 1.53192 * 109.31131 * 181.37867 * 13 11 10 15 15 N 1.46930 * 108.77600 * 305.37139 * 14 13 11 16 16 C 1.36941 * 120.62943 * 233.62968 * 15 14 13 17 17 H 1.07996 * 120.00395 * 153.40249 * 16 15 14 18 18 C 1.38811 * 119.99621 * 333.40614 * 16 15 14 19 19 N 1.31620 * 120.00032 * 157.69252 * 18 16 15 20 20 Si 1.86804 * 120.00325 * 337.68544 * 18 16 15 21 21 H 1.48499 * 109.47088 * 90.01762 * 20 18 16 22 22 H 1.48493 * 109.47252 * 210.02169 * 20 18 16 23 23 H 1.48504 * 109.46904 * 330.02197 * 20 18 16 24 24 C 1.46926 * 118.74219 * 53.60357 * 15 14 13 25 25 C 1.53035 * 109.46012 * 205.02652 * 11 10 8 26 26 H 1.08996 * 109.50060 * 298.61282 * 25 11 10 27 27 O 1.42904 * 109.49909 * 58.67907 * 25 11 10 28 28 H 1.08998 * 109.47149 * 262.65137 * 1 2 3 29 29 H 1.08998 * 109.47502 * 22.65315 * 1 2 3 30 30 H 1.08997 * 109.47124 * 142.65354 * 1 2 3 31 31 H 1.08001 * 120.02074 * 179.97438 * 5 4 3 32 32 H 1.08001 * 121.08692 * 179.97438 * 6 5 4 33 33 H 0.97004 * 120.00302 * 0.02562 * 10 8 7 34 34 H 1.08997 * 109.49774 * 301.33441 * 13 11 10 35 35 H 1.09002 * 109.49418 * 61.43423 * 13 11 10 36 36 H 1.08997 * 109.58968 * 185.58223 * 14 13 11 37 37 H 1.09007 * 109.58552 * 65.15404 * 14 13 11 38 38 H 0.96999 * 120.00283 * 179.97438 * 19 18 16 39 39 H 1.09003 * 109.58483 * 186.60437 * 24 15 14 40 40 H 1.08997 * 109.69888 * 66.25359 * 24 15 14 41 41 H 0.96698 * 114.00265 * 179.97438 * 27 25 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1701 1.1405 0.0000 4 7 3.4519 1.1886 -0.0051 5 6 4.2023 0.1037 -0.0055 6 6 3.6090 -1.1478 0.0003 7 6 2.2092 -1.2080 0.0055 8 6 1.4983 -2.5076 0.0109 9 8 0.2880 -2.5375 0.1152 10 7 2.1938 -3.6566 -0.0999 11 6 1.4906 -4.9419 -0.0951 12 1 0.6323 -4.8837 0.5743 13 6 1.0111 -5.2656 -1.5120 14 6 0.2465 -6.5930 -1.4972 15 7 1.1037 -7.6258 -0.8994 16 6 1.3504 -8.7979 -1.5632 17 1 2.2607 -9.3462 -1.3709 18 6 0.4302 -9.2813 -2.4833 19 7 0.8160 -10.1205 -3.4210 20 14 -1.3555 -8.7408 -2.3906 21 1 -1.5467 -7.5203 -3.2146 22 1 -2.2286 -9.8266 -2.9042 23 1 -1.7108 -8.4459 -0.9792 24 6 1.6917 -7.3770 0.4239 25 6 2.4401 -6.0407 0.3875 26 1 3.2866 -6.1158 -0.2950 27 8 2.9112 -5.7222 1.6985 28 1 -0.3633 -0.1314 1.0192 29 1 -0.3634 0.9483 -0.3958 30 1 -0.3633 -0.8169 -0.6234 31 1 5.2788 0.1913 -0.0103 32 1 4.2059 -2.0479 -0.0003 33 1 3.1599 -3.6328 -0.1828 34 1 0.3534 -4.4709 -1.8640 35 1 1.8708 -5.3484 -2.1770 36 1 -0.0113 -6.8777 -2.5173 37 1 -0.6622 -6.4847 -0.9050 38 1 0.1729 -10.4586 -4.0637 39 1 2.3874 -8.1788 0.6713 40 1 0.9025 -7.3335 1.1744 41 1 3.5189 -6.3773 2.0681 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001090396638.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:46:53 Heat of formation + Delta-G solvation = 5.370591 kcal Electronic energy + Delta-G solvation = -25466.544396 eV Core-core repulsion = 21769.117448 eV Total energy + Delta-G solvation = -3697.426948 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 306.148 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.58934 -39.91198 -38.30687 -35.77089 -34.95173 -33.96691 -33.56703 -32.10130 -30.44401 -29.37257 -28.41305 -26.18453 -24.91057 -23.33748 -22.89267 -22.23647 -20.89648 -20.09797 -18.31351 -17.93936 -17.26439 -16.69590 -16.13885 -16.02914 -15.83505 -15.60066 -14.89753 -14.66987 -14.59062 -14.15495 -13.92840 -13.59871 -13.38254 -13.02668 -12.93886 -12.65100 -12.46068 -12.39323 -12.07463 -11.69423 -11.32042 -11.29273 -11.12797 -10.60211 -10.58551 -10.32486 -10.25160 -10.06720 -10.03087 -9.99063 -9.65515 -9.62328 -9.04657 -8.73349 -7.18491 -6.08627 -3.45643 0.00750 0.52385 2.56926 2.82000 3.24613 3.30919 3.42570 3.45175 3.68580 4.00030 4.02284 4.14014 4.30040 4.42024 4.45370 4.78699 4.91510 4.99441 5.09777 5.20469 5.25740 5.27687 5.42904 5.52224 5.60376 5.63648 5.66096 5.78641 5.84375 6.04095 6.15187 6.15806 6.26575 6.40622 6.43840 6.51231 6.67568 7.28821 7.64064 7.80686 7.96300 8.17406 8.33156 8.76605 9.56658 9.90795 11.06581 Molecular weight = 306.15amu Principal moments of inertia in cm(-1) A = 0.023227 B = 0.003603 C = 0.003363 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1205.187981 B = 7770.223802 C = 8323.140736 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C 0.125 3.875 3 N -0.247 5.247 4 N -0.225 5.225 5 C 0.027 3.973 6 C -0.080 4.080 7 C -0.129 4.129 8 C 0.560 3.440 9 O -0.519 6.519 10 N -0.704 5.704 11 C 0.162 3.838 12 H 0.094 0.906 13 C -0.141 4.141 14 C 0.126 3.874 15 N -0.601 5.601 16 C -0.269 4.269 17 H 0.087 0.913 18 C 0.028 3.972 19 N -0.902 5.902 20 Si 0.879 3.121 21 H -0.285 1.285 22 H -0.301 1.301 23 H -0.271 1.271 24 C 0.124 3.876 25 C 0.079 3.921 26 H 0.062 0.938 27 O -0.571 6.571 28 H 0.089 0.911 29 H 0.075 0.925 30 H 0.105 0.895 31 H 0.179 0.821 32 H 0.155 0.845 33 H 0.398 0.602 34 H 0.068 0.932 35 H 0.070 0.930 36 H 0.082 0.918 37 H 0.031 0.969 38 H 0.265 0.735 39 H 0.071 0.929 40 H 0.035 0.965 41 H 0.378 0.622 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.673 15.870 7.503 18.780 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.020 4.020 3 N -0.090 5.090 4 N -0.067 5.067 5 C -0.137 4.137 6 C -0.110 4.110 7 C -0.144 4.144 8 C 0.344 3.656 9 O -0.395 6.395 10 N -0.354 5.354 11 C 0.058 3.942 12 H 0.112 0.888 13 C -0.181 4.181 14 C 0.000 4.000 15 N -0.326 5.326 16 C -0.397 4.397 17 H 0.105 0.895 18 C -0.172 4.172 19 N -0.544 5.544 20 Si 0.709 3.291 21 H -0.213 1.213 22 H -0.229 1.229 23 H -0.195 1.195 24 C -0.004 4.004 25 C 0.018 3.982 26 H 0.080 0.920 27 O -0.375 6.375 28 H 0.107 0.893 29 H 0.094 0.906 30 H 0.123 0.877 31 H 0.196 0.804 32 H 0.173 0.827 33 H 0.232 0.768 34 H 0.087 0.913 35 H 0.088 0.912 36 H 0.100 0.900 37 H 0.049 0.951 38 H 0.075 0.925 39 H 0.089 0.911 40 H 0.053 0.947 41 H 0.225 0.775 Dipole moment (debyes) X Y Z Total from point charges 5.316 17.868 7.354 20.040 hybrid contribution 0.139 -1.930 -0.019 1.935 sum 5.455 15.938 7.335 18.373 Atomic orbital electron populations 1.20982 0.86148 1.04429 1.04805 1.23187 0.99797 0.88514 0.90464 1.73097 1.01451 1.24074 1.10417 1.72862 0.99732 1.27872 1.06232 1.24291 1.02790 0.89214 0.97408 1.22706 0.94133 1.00501 0.93690 1.21187 0.94538 0.95912 1.02765 1.17838 0.87100 0.83128 0.77486 1.90770 1.13055 1.86751 1.48951 1.45966 1.10671 1.05747 1.72968 1.21069 0.95215 0.79811 0.98078 0.88839 1.22447 1.01399 0.99429 0.94873 1.21409 0.92537 0.87036 0.99067 1.44336 1.56918 1.16084 1.15260 1.18869 1.03144 0.98768 1.18931 0.89519 1.25246 0.97954 0.96879 0.97074 1.69842 1.34445 1.34724 1.15386 0.87046 0.86958 0.76652 0.78458 1.21271 1.22866 1.19550 1.21545 0.96607 0.93829 0.88381 1.22740 0.96312 0.95614 0.83516 0.91964 1.86466 1.67351 1.51376 1.32339 0.89284 0.90576 0.87653 0.80417 0.82743 0.76764 0.91306 0.91160 0.90016 0.95144 0.92543 0.91070 0.94738 0.77523 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.17 8.92 36.01 0.32 -0.85 16 2 C 0.12 1.52 6.91 -82.00 -0.57 0.95 16 3 N -0.25 -3.22 11.42 33.81 0.39 -2.83 16 4 N -0.23 -2.67 11.48 30.53 0.35 -2.32 16 5 C 0.03 0.23 11.30 -17.42 -0.20 0.03 16 6 C -0.08 -0.67 9.69 -38.78 -0.38 -1.04 16 7 C -0.13 -1.46 5.92 -104.58 -0.62 -2.08 16 8 C 0.56 7.38 7.70 -12.20 -0.09 7.29 16 9 O -0.52 -8.24 13.21 5.35 0.07 -8.17 16 10 N -0.70 -8.59 4.88 -54.62 -0.27 -8.85 16 11 C 0.16 2.43 2.12 -67.89 -0.14 2.29 16 12 H 0.09 1.60 7.58 -51.93 -0.39 1.21 16 13 C -0.14 -2.37 5.65 -26.61 -0.15 -2.52 16 14 C 0.13 2.60 4.22 -3.71 -0.02 2.58 16 15 N -0.60 -13.20 2.77 -172.32 -0.48 -13.68 16 16 C -0.27 -7.06 10.03 -15.06 -0.15 -7.21 16 17 H 0.09 2.40 8.05 -52.49 -0.42 1.98 16 18 C 0.03 0.78 5.20 -17.43 -0.09 0.69 16 19 N -0.90 -26.53 13.97 55.49 0.78 -25.75 16 20 Si 0.88 21.56 24.39 -169.99 -4.15 17.42 16 21 H -0.29 -6.73 6.48 56.52 0.37 -6.36 16 22 H -0.30 -7.54 7.11 56.52 0.40 -7.13 16 23 H -0.27 -6.59 6.91 56.52 0.39 -6.20 16 24 C 0.12 2.18 6.14 -3.71 -0.02 2.15 16 25 C 0.08 1.13 3.14 -26.61 -0.08 1.05 16 26 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 27 O -0.57 -7.00 13.16 -35.23 -0.46 -7.46 16 28 H 0.09 0.95 8.14 -51.93 -0.42 0.53 16 29 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 30 H 0.11 1.28 6.02 -51.93 -0.31 0.97 16 31 H 0.18 0.79 8.06 -52.49 -0.42 0.37 16 32 H 0.15 0.78 6.65 -52.49 -0.35 0.43 16 33 H 0.40 3.75 6.82 -40.82 -0.28 3.47 16 34 H 0.07 1.13 8.14 -51.93 -0.42 0.70 16 35 H 0.07 1.17 8.14 -51.93 -0.42 0.74 16 36 H 0.08 1.86 4.43 -51.93 -0.23 1.63 16 37 H 0.03 0.64 7.27 -51.92 -0.38 0.26 16 38 H 0.26 7.41 8.31 -40.82 -0.34 7.08 16 39 H 0.07 1.20 7.93 -51.93 -0.41 0.78 16 40 H 0.03 0.62 8.14 -51.93 -0.42 0.20 16 41 H 0.38 3.14 9.08 45.56 0.41 3.55 16 LS Contribution 331.77 15.07 5.00 5.00 Total: -1.00 -32.89 331.77 -5.46 -38.35 By element: Atomic # 1 Polarization: 9.48 SS G_CDS: -4.50 Total: 4.98 kcal Atomic # 6 Polarization: 5.52 SS G_CDS: -2.19 Total: 3.33 kcal Atomic # 7 Polarization: -54.21 SS G_CDS: 0.77 Total: -53.44 kcal Atomic # 8 Polarization: -15.24 SS G_CDS: -0.39 Total: -15.64 kcal Atomic # 14 Polarization: 21.56 SS G_CDS: -4.15 Total: 17.42 kcal Total LS contribution 5.00 Total: 5.00 kcal Total: -32.89 -5.46 -38.35 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001090396638.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.724 kcal (2) G-P(sol) polarization free energy of solvation -32.891 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.833 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.462 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.353 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.371 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds