Wall clock time and date at job start Tue Mar 31 2020 03:46:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 N 1.31921 * 120.17208 * 2 1 4 4 N 1.28278 * 122.32245 * 180.26982 * 3 2 1 5 5 C 1.31913 * 122.52060 * 359.72874 * 4 3 2 6 6 C 1.38508 * 119.96556 * 359.97438 * 5 4 3 7 7 C 1.39725 * 120.17011 * 179.73739 * 2 1 3 8 8 C 1.48135 * 121.14998 * 0.02562 * 7 2 1 9 9 O 1.21520 * 119.99431 * 354.29414 * 8 7 2 10 10 N 1.34769 * 120.00358 * 174.29153 * 8 7 2 11 11 C 1.46506 * 120.00187 * 180.02562 * 10 8 7 12 12 H 1.08996 * 109.45869 * 324.99989 * 11 10 8 13 13 C 1.53046 * 109.44696 * 84.96398 * 11 10 8 14 14 C 1.53192 * 109.31131 * 181.37867 * 13 11 10 15 15 N 1.46930 * 108.77600 * 305.37139 * 14 13 11 16 16 C 1.36941 * 120.62943 * 233.62968 * 15 14 13 17 17 H 1.07996 * 120.00395 * 153.40249 * 16 15 14 18 18 C 1.38811 * 119.99621 * 333.40614 * 16 15 14 19 19 N 1.31620 * 120.00032 * 157.69252 * 18 16 15 20 20 Si 1.86804 * 120.00325 * 337.68544 * 18 16 15 21 21 H 1.48499 * 109.47088 * 90.01762 * 20 18 16 22 22 H 1.48493 * 109.47252 * 210.02169 * 20 18 16 23 23 H 1.48504 * 109.46904 * 330.02197 * 20 18 16 24 24 C 1.46926 * 118.74219 * 53.60357 * 15 14 13 25 25 C 1.53035 * 109.46012 * 205.02652 * 11 10 8 26 26 H 1.08996 * 109.50060 * 298.61282 * 25 11 10 27 27 O 1.42904 * 109.49909 * 58.67907 * 25 11 10 28 28 H 1.08998 * 109.47149 * 262.65137 * 1 2 3 29 29 H 1.08998 * 109.47502 * 22.65315 * 1 2 3 30 30 H 1.08997 * 109.47124 * 142.65354 * 1 2 3 31 31 H 1.08001 * 120.02074 * 179.97438 * 5 4 3 32 32 H 1.08001 * 121.08692 * 179.97438 * 6 5 4 33 33 H 0.97004 * 120.00302 * 0.02562 * 10 8 7 34 34 H 1.08997 * 109.49774 * 301.33441 * 13 11 10 35 35 H 1.09002 * 109.49418 * 61.43423 * 13 11 10 36 36 H 1.08997 * 109.58968 * 185.58223 * 14 13 11 37 37 H 1.09007 * 109.58552 * 65.15404 * 14 13 11 38 38 H 0.96999 * 120.00283 * 179.97438 * 19 18 16 39 39 H 1.09003 * 109.58483 * 186.60437 * 24 15 14 40 40 H 1.08997 * 109.69888 * 66.25359 * 24 15 14 41 41 H 0.96698 * 114.00265 * 179.97438 * 27 25 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1701 1.1405 0.0000 4 7 3.4519 1.1886 -0.0051 5 6 4.2023 0.1037 -0.0055 6 6 3.6090 -1.1478 0.0003 7 6 2.2092 -1.2080 0.0055 8 6 1.4983 -2.5076 0.0109 9 8 0.2880 -2.5375 0.1152 10 7 2.1938 -3.6566 -0.0999 11 6 1.4906 -4.9419 -0.0951 12 1 0.6323 -4.8837 0.5743 13 6 1.0111 -5.2656 -1.5120 14 6 0.2465 -6.5930 -1.4972 15 7 1.1037 -7.6258 -0.8994 16 6 1.3504 -8.7979 -1.5632 17 1 2.2607 -9.3462 -1.3709 18 6 0.4302 -9.2813 -2.4833 19 7 0.8160 -10.1205 -3.4210 20 14 -1.3555 -8.7408 -2.3906 21 1 -1.5467 -7.5203 -3.2146 22 1 -2.2286 -9.8266 -2.9042 23 1 -1.7108 -8.4459 -0.9792 24 6 1.6917 -7.3770 0.4239 25 6 2.4401 -6.0407 0.3875 26 1 3.2866 -6.1158 -0.2950 27 8 2.9112 -5.7222 1.6985 28 1 -0.3633 -0.1314 1.0192 29 1 -0.3634 0.9483 -0.3958 30 1 -0.3633 -0.8169 -0.6234 31 1 5.2788 0.1913 -0.0103 32 1 4.2059 -2.0479 -0.0003 33 1 3.1599 -3.6328 -0.1828 34 1 0.3534 -4.4709 -1.8640 35 1 1.8708 -5.3484 -2.1770 36 1 -0.0113 -6.8777 -2.5173 37 1 -0.6622 -6.4847 -0.9050 38 1 0.1729 -10.4586 -4.0637 39 1 2.3874 -8.1788 0.6713 40 1 0.9025 -7.3335 1.1744 41 1 3.5189 -6.3773 2.0681 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001090396638.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:46:53 Heat of formation + Delta-G solvation = -22.039260 kcal Electronic energy + Delta-G solvation = -25467.732976 eV Core-core repulsion = 21769.117448 eV Total energy + Delta-G solvation = -3698.615528 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 306.148 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -42.42523 -41.00123 -39.55137 -37.12092 -36.08036 -34.83572 -34.54400 -33.83077 -31.91737 -30.73634 -29.31159 -27.38907 -26.24722 -24.31025 -24.20396 -23.68750 -21.96832 -21.47626 -19.34735 -18.91280 -18.66501 -18.02537 -17.49939 -16.89142 -16.77885 -16.67064 -16.23005 -16.16257 -15.75412 -15.38157 -15.05201 -14.85446 -14.59426 -14.32174 -14.03846 -14.01167 -13.84513 -13.65198 -13.26148 -13.18626 -12.95604 -12.67307 -12.19837 -12.09345 -11.90512 -11.63168 -11.51853 -11.42457 -11.37385 -11.16127 -10.88057 -10.72050 -10.55486 -10.17844 -9.03158 -8.19932 -5.51416 -0.79192 -0.20899 1.28463 1.41243 1.48062 1.62614 1.80630 2.38667 2.49047 2.90341 2.92217 3.09688 3.25282 3.29306 3.34159 3.56743 3.70307 3.81075 3.99180 4.09061 4.22584 4.23639 4.31620 4.42226 4.46750 4.53499 4.65518 4.68200 4.79043 4.86197 4.88042 4.91628 5.03450 5.06581 5.18977 5.27015 5.35939 5.81254 6.09677 6.34386 6.79382 6.91633 7.00582 7.54780 7.56475 7.95577 8.99050 Molecular weight = 306.15amu Principal moments of inertia in cm(-1) A = 0.023227 B = 0.003603 C = 0.003363 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1205.187981 B = 7770.223802 C = 8323.140736 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.101 4.101 2 C 0.111 3.889 3 N -0.275 5.275 4 N -0.254 5.254 5 C 0.037 3.963 6 C -0.058 4.058 7 C -0.145 4.145 8 C 0.561 3.439 9 O -0.551 6.551 10 N -0.691 5.691 11 C 0.169 3.831 12 H 0.073 0.927 13 C -0.129 4.129 14 C 0.121 3.879 15 N -0.613 5.613 16 C -0.249 4.249 17 H 0.066 0.934 18 C -0.026 4.026 19 N -0.949 5.949 20 Si 0.932 3.068 21 H -0.274 1.274 22 H -0.310 1.310 23 H -0.269 1.269 24 C 0.118 3.882 25 C 0.100 3.900 26 H 0.075 0.925 27 O -0.568 6.568 28 H 0.087 0.913 29 H 0.083 0.917 30 H 0.092 0.908 31 H 0.223 0.777 32 H 0.195 0.805 33 H 0.415 0.585 34 H 0.072 0.928 35 H 0.075 0.925 36 H 0.058 0.942 37 H 0.028 0.972 38 H 0.262 0.738 39 H 0.078 0.922 40 H 0.033 0.967 41 H 0.398 0.602 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.672 17.337 8.666 21.234 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C -0.034 4.034 3 N -0.118 5.118 4 N -0.094 5.094 5 C -0.127 4.127 6 C -0.088 4.088 7 C -0.160 4.160 8 C 0.347 3.653 9 O -0.430 6.430 10 N -0.342 5.342 11 C 0.064 3.936 12 H 0.091 0.909 13 C -0.169 4.169 14 C -0.004 4.004 15 N -0.339 5.339 16 C -0.378 4.378 17 H 0.083 0.917 18 C -0.221 4.221 19 N -0.594 5.594 20 Si 0.761 3.239 21 H -0.200 1.200 22 H -0.239 1.239 23 H -0.193 1.193 24 C -0.008 4.008 25 C 0.039 3.961 26 H 0.093 0.907 27 O -0.376 6.376 28 H 0.105 0.895 29 H 0.102 0.898 30 H 0.110 0.890 31 H 0.239 0.761 32 H 0.212 0.788 33 H 0.252 0.748 34 H 0.090 0.910 35 H 0.094 0.906 36 H 0.076 0.924 37 H 0.046 0.954 38 H 0.071 0.929 39 H 0.096 0.904 40 H 0.051 0.949 41 H 0.249 0.751 Dipole moment (debyes) X Y Z Total from point charges 7.351 19.394 8.564 22.439 hybrid contribution -0.333 -2.375 -0.275 2.414 sum 7.018 17.018 8.289 20.189 Atomic orbital electron populations 1.20894 0.86255 1.04281 1.04453 1.23274 1.00073 0.88980 0.91046 1.73055 1.02333 1.24563 1.11799 1.72767 0.99555 1.29845 1.07278 1.24985 1.04478 0.88218 0.95060 1.23159 0.92863 1.02078 0.90711 1.21043 0.95929 0.94359 1.04634 1.18088 0.86784 0.83792 0.76616 1.90764 1.14641 1.87242 1.50310 1.45673 1.11389 1.04417 1.72675 1.20742 0.95182 0.81388 0.96307 0.90854 1.22249 1.01129 0.97110 0.96433 1.21372 0.92965 0.88604 0.97502 1.44422 1.57342 1.15147 1.16959 1.18880 1.01770 0.99382 1.17770 0.91669 1.25767 1.01038 0.97845 0.97498 1.69945 1.35301 1.37321 1.16879 0.86177 0.82970 0.76285 0.78454 1.20040 1.23915 1.19340 1.21760 0.96831 0.96242 0.85983 1.22282 0.95883 0.92990 0.84917 0.90722 1.86445 1.67908 1.52077 1.31127 0.89459 0.89770 0.88964 0.76097 0.78823 0.74750 0.90963 0.90618 0.92358 0.95435 0.92870 0.90396 0.94887 0.75132 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -2.25 8.92 71.24 0.64 -1.61 16 2 C 0.11 2.62 6.91 42.91 0.30 2.91 16 3 N -0.28 -6.91 11.42 -46.95 -0.54 -7.44 16 4 N -0.25 -5.49 11.48 -57.33 -0.66 -6.15 16 5 C 0.04 0.47 11.30 84.75 0.96 1.43 16 6 C -0.06 -0.72 9.69 22.79 0.22 -0.50 16 7 C -0.15 -2.94 5.92 -19.83 -0.12 -3.06 16 8 C 0.56 13.62 7.70 86.87 0.67 14.29 16 9 O -0.55 -17.10 13.21 -3.78 -0.05 -17.15 16 10 N -0.69 -14.59 4.88 -445.00 -2.17 -16.76 16 11 C 0.17 4.65 2.12 45.02 0.10 4.75 16 12 H 0.07 2.39 7.58 -2.39 -0.02 2.37 16 13 C -0.13 -4.10 5.65 30.67 0.17 -3.93 16 14 C 0.12 4.90 4.22 86.36 0.36 5.26 16 15 N -0.61 -26.31 2.77 -699.08 -1.94 -28.25 16 16 C -0.25 -13.06 10.03 84.03 0.84 -12.21 16 17 H 0.07 3.65 8.05 -2.91 -0.02 3.63 16 18 C -0.03 -1.44 5.20 84.86 0.44 -1.00 16 19 N -0.95 -57.10 13.97 21.65 0.30 -56.79 16 20 Si 0.93 45.19 24.39 68.60 1.67 46.86 16 21 H -0.27 -12.60 6.48 99.48 0.64 -11.95 16 22 H -0.31 -15.40 7.11 99.48 0.71 -14.70 16 23 H -0.27 -12.74 6.91 99.48 0.69 -12.05 16 24 C 0.12 3.91 6.14 86.36 0.53 4.44 16 25 C 0.10 2.54 3.14 30.67 0.10 2.64 16 26 H 0.07 1.77 8.14 -2.39 -0.02 1.75 16 27 O -0.57 -11.59 13.16 -148.98 -1.96 -13.55 16 28 H 0.09 1.91 8.14 -2.39 -0.02 1.89 16 29 H 0.08 1.65 8.14 -2.39 -0.02 1.63 16 30 H 0.09 2.29 6.02 -2.39 -0.01 2.28 16 31 H 0.22 0.73 8.06 -2.91 -0.02 0.71 16 32 H 0.19 0.75 6.65 -2.91 -0.02 0.73 16 33 H 0.41 5.85 6.82 -92.71 -0.63 5.21 16 34 H 0.07 2.26 8.14 -2.39 -0.02 2.24 16 35 H 0.08 2.33 8.14 -2.39 -0.02 2.31 16 36 H 0.06 2.63 4.43 -2.39 -0.01 2.62 16 37 H 0.03 1.13 7.27 -2.38 -0.02 1.11 16 38 H 0.26 15.11 8.31 -92.71 -0.77 14.34 16 39 H 0.08 2.46 7.93 -2.39 -0.02 2.44 16 40 H 0.03 1.12 8.14 -2.39 -0.02 1.11 16 41 H 0.40 4.84 9.08 -74.06 -0.67 4.16 16 Total: -1.00 -73.55 331.77 -0.43 -73.98 By element: Atomic # 1 Polarization: 12.13 SS G_CDS: -0.30 Total: 11.83 kcal Atomic # 6 Polarization: 8.21 SS G_CDS: 5.21 Total: 13.41 kcal Atomic # 7 Polarization: -110.39 SS G_CDS: -5.00 Total: -115.39 kcal Atomic # 8 Polarization: -28.68 SS G_CDS: -2.01 Total: -30.69 kcal Atomic # 14 Polarization: 45.19 SS G_CDS: 1.67 Total: 46.86 kcal Total: -73.55 -0.43 -73.98 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001090396638.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.939 kcal (2) G-P(sol) polarization free energy of solvation -73.547 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.608 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.432 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.979 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.039 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds