Wall clock time and date at job start Tue Mar 31 2020 04:42:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.46504 * 119.99856 * 2 1 4 4 C 1.50697 * 109.47173 * 269.99927 * 3 2 1 5 5 H 1.08007 * 119.99683 * 0.02562 * 4 3 2 6 6 C 1.37875 * 120.00096 * 179.97438 * 4 3 2 7 7 N 1.31511 * 120.00245 * 0.02562 * 6 4 3 8 8 Si 1.86803 * 119.99988 * 180.02562 * 6 4 3 9 9 H 1.48496 * 109.47396 * 59.99653 * 8 6 4 10 10 H 1.48492 * 109.47308 * 180.02562 * 8 6 4 11 11 H 1.48507 * 109.47040 * 299.99739 * 8 6 4 12 12 C 1.34771 * 120.00124 * 179.97438 * 2 1 3 13 13 O 1.21392 * 119.99903 * 183.60903 * 12 2 1 14 14 C 1.49241 * 120.00414 * 3.60905 * 12 2 1 15 15 O 1.21747 * 119.99692 * 354.16333 * 14 12 2 16 16 N 1.33164 * 120.00195 * 174.16485 * 14 12 2 17 17 C 1.33386 * 119.99694 * 180.02562 * 16 14 12 18 18 C 1.40854 * 126.34942 * 180.02562 * 17 16 14 19 19 C 1.35305 * 108.22216 * 179.97438 * 18 17 16 20 20 C 1.50701 * 125.55783 * 179.97438 * 19 18 17 21 21 C 1.52995 * 117.50050 * 325.02699 * 20 19 18 22 22 C 1.52997 * 60.03563 * 107.49958 * 21 20 19 23 23 N 1.36210 * 108.88174 * 0.26184 * 19 18 17 24 24 C 1.46497 * 125.86274 * 179.73580 * 23 19 18 25 25 N 1.37277 * 126.35405 * 359.96415 * 17 16 14 26 26 H 0.97002 * 126.33906 * 359.97438 * 25 17 16 27 27 H 1.08994 * 109.47229 * 263.98944 * 1 2 3 28 28 H 1.08996 * 109.46867 * 23.99211 * 1 2 3 29 29 H 1.09003 * 109.46540 * 143.98860 * 1 2 3 30 30 H 1.09006 * 109.46937 * 29.99517 * 3 2 1 31 31 H 1.08995 * 109.46988 * 149.99685 * 3 2 1 32 32 H 0.96996 * 120.00352 * 180.02562 * 7 6 4 33 33 H 1.07998 * 125.88750 * 359.92850 * 18 17 16 34 34 H 1.08997 * 115.55863 * 179.33495 * 20 19 18 35 35 H 1.08997 * 117.50033 * 0.02562 * 21 20 19 36 36 H 1.09001 * 117.50140 * 215.00211 * 21 20 19 37 37 H 1.08999 * 117.49987 * 107.47242 * 22 21 20 38 38 H 1.08996 * 117.50282 * 252.48255 * 22 21 20 39 39 H 1.09003 * 109.47441 * 89.99480 * 24 23 19 40 40 H 1.09000 * 109.47455 * 209.99796 * 24 23 19 41 41 H 1.09006 * 109.47118 * 330.00013 * 24 23 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.4487 1.7038 -1.4208 5 1 2.0974 1.0962 -2.2417 6 6 3.1260 2.8780 -1.6727 7 7 3.5533 3.6182 -0.6732 8 14 3.4367 3.4176 -3.4339 9 1 2.1390 3.5947 -4.1337 10 1 4.1792 4.7036 -3.4340 11 1 4.2395 2.3830 -4.1343 12 6 2.1389 -1.1671 0.0005 13 8 3.3510 -1.1681 0.0667 14 6 1.3951 -2.4584 -0.0803 15 8 0.1783 -2.4635 -0.0394 16 7 2.0622 -3.6050 -0.1969 17 6 1.3972 -4.7590 -0.2696 18 6 1.9637 -6.0426 -0.3937 19 6 0.9581 -6.9469 -0.4341 20 6 1.1258 -8.4390 -0.5624 21 6 2.2827 -8.9483 -1.4243 22 6 2.3525 -9.0722 0.0990 23 7 -0.2309 -6.2881 -0.3462 24 6 -1.5584 -6.9075 -0.3599 25 7 0.0339 -4.9161 -0.2362 26 1 -0.6245 -4.2083 -0.1550 27 1 -0.3633 -0.1076 1.0219 28 1 -0.3633 0.9389 -0.4178 29 1 -0.3632 -0.8313 -0.6042 30 1 1.6083 2.0285 0.5138 31 1 3.1499 1.1385 0.5139 32 1 4.0294 4.4444 -0.8504 33 1 3.0189 -6.2663 -0.4481 34 1 0.2020 -9.0174 -0.5673 35 1 2.9228 -8.2042 -1.8982 36 1 2.1199 -9.8616 -1.9966 37 1 2.2351 -10.0669 0.5290 38 1 3.0384 -8.4097 0.6270 39 1 -1.8588 -7.1457 0.6604 40 1 -2.2777 -6.2157 -0.7983 41 1 -1.5265 -7.8221 -0.9521 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000354315708.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:42:17 Heat of formation + Delta-G solvation = 85.361456 kcal Electronic energy + Delta-G solvation = -24572.665578 eV Core-core repulsion = 20878.707295 eV Total energy + Delta-G solvation = -3693.958283 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 306.148 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.92630 -39.64883 -37.90903 -37.33493 -35.00723 -34.25977 -32.42246 -31.74889 -31.41631 -27.86573 -27.03828 -25.74407 -24.54921 -24.26219 -22.92664 -22.45856 -20.89114 -20.10361 -18.73138 -17.62362 -16.83620 -16.41745 -16.22278 -16.13629 -15.95864 -15.04257 -14.99603 -14.91776 -14.55405 -14.27030 -13.72759 -13.66020 -13.16855 -13.04235 -12.90976 -12.41131 -12.10796 -12.00865 -11.92809 -11.78188 -11.67894 -11.15903 -11.11794 -10.92052 -10.68710 -10.51166 -10.39680 -10.04297 -9.61032 -9.52741 -9.27652 -8.33149 -8.28581 -7.77621 -7.41171 -5.93199 -3.97771 0.71284 1.15070 1.85658 3.16728 3.37525 3.37920 3.40882 3.44168 3.48582 3.58977 3.80212 4.16651 4.27678 4.32958 4.35981 4.46412 4.51446 4.55175 4.76090 4.92836 4.96782 5.12943 5.22516 5.32637 5.40705 5.48008 5.58534 5.59082 5.91871 6.18648 6.32295 6.37140 6.49310 6.67217 7.13960 7.27499 7.55874 7.59113 7.72002 8.03294 8.34811 8.42960 8.76850 9.02432 9.23997 9.66573 11.14852 Molecular weight = 306.15amu Principal moments of inertia in cm(-1) A = 0.024170 B = 0.002862 C = 0.002744 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1158.186740 B = 9780.823324 C =10201.349843 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.077 3.923 2 N -0.579 5.579 3 C 0.243 3.757 4 C -0.526 4.526 5 H 0.057 0.943 6 C 0.061 3.939 7 N -0.896 5.896 8 Si 0.900 3.100 9 H -0.277 1.277 10 H -0.286 1.286 11 H -0.275 1.275 12 C 0.509 3.491 13 O -0.506 6.506 14 C 0.484 3.516 15 O -0.585 6.585 16 N -0.606 5.606 17 C 0.478 3.522 18 C -0.262 4.262 19 C 0.211 3.789 20 C -0.120 4.120 21 C -0.153 4.153 22 C -0.153 4.153 23 N -0.388 5.388 24 C 0.094 3.906 25 N -0.482 5.482 26 H 0.454 0.546 27 H 0.040 0.960 28 H 0.062 0.938 29 H 0.089 0.911 30 H 0.035 0.965 31 H 0.047 0.953 32 H 0.263 0.737 33 H 0.172 0.828 34 H 0.122 0.878 35 H 0.110 0.890 36 H 0.106 0.894 37 H 0.106 0.894 38 H 0.110 0.890 39 H 0.077 0.923 40 H 0.088 0.912 41 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.663 -30.896 0.930 33.037 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 N -0.313 5.313 3 C 0.124 3.876 4 C -0.564 4.564 5 H 0.075 0.925 6 C -0.141 4.141 7 N -0.535 5.535 8 Si 0.727 3.273 9 H -0.203 1.203 10 H -0.212 1.212 11 H -0.201 1.201 12 C 0.290 3.710 13 O -0.381 6.381 14 C 0.269 3.731 15 O -0.467 6.467 16 N -0.367 5.367 17 C 0.228 3.772 18 C -0.292 4.292 19 C 0.090 3.910 20 C -0.140 4.140 21 C -0.191 4.191 22 C -0.190 4.190 23 N -0.178 5.178 24 C -0.046 4.046 25 N -0.220 5.220 26 H 0.312 0.688 27 H 0.058 0.942 28 H 0.081 0.919 29 H 0.107 0.893 30 H 0.053 0.947 31 H 0.065 0.935 32 H 0.073 0.927 33 H 0.190 0.810 34 H 0.139 0.861 35 H 0.128 0.872 36 H 0.124 0.876 37 H 0.124 0.876 38 H 0.128 0.872 39 H 0.096 0.904 40 H 0.107 0.893 41 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -11.337 -30.352 1.058 32.417 hybrid contribution -1.112 0.946 -0.879 1.704 sum -12.448 -29.406 0.179 31.932 Atomic orbital electron populations 1.22070 0.80391 1.03159 1.00989 1.48087 1.07082 1.06950 1.69157 1.19397 0.92775 0.77794 0.97648 1.21415 1.36483 1.06327 0.92221 0.92471 1.24931 0.95338 0.96326 0.97497 1.69928 1.38452 1.14330 1.30760 0.86533 0.78312 0.77760 0.84676 1.20310 1.21170 1.20083 1.19262 0.87568 0.83906 0.80254 1.90696 1.13225 1.86559 1.47637 1.21651 0.85722 0.90580 0.75173 1.90286 1.17327 1.88986 1.50136 1.70132 1.32025 0.94840 1.39698 1.20975 0.77743 0.94976 0.83467 1.20502 1.00362 0.87902 1.20426 1.20078 0.83679 0.93129 0.94101 1.20581 0.96134 0.87397 1.09897 1.23187 0.98579 1.03337 0.93981 1.23191 0.97567 1.02337 0.95924 1.46501 1.06437 0.96431 1.68385 1.22125 0.79620 0.98959 1.03928 1.47616 1.09877 0.95620 1.68898 0.68783 0.94187 0.91908 0.89337 0.94659 0.93523 0.92697 0.81040 0.86051 0.87187 0.87561 0.87564 0.87188 0.90430 0.89297 0.88261 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.62 9.55 59.85 0.57 2.19 16 2 N -0.58 -14.86 2.86 -183.54 -0.52 -15.38 16 3 C 0.24 7.06 5.16 -5.19 -0.03 7.03 16 4 C -0.53 -16.15 9.39 -34.44 -0.32 -16.48 16 5 H 0.06 1.76 7.81 -52.48 -0.41 1.35 16 6 C 0.06 1.84 5.46 -17.82 -0.10 1.75 16 7 N -0.90 -27.95 13.29 55.43 0.74 -27.22 16 8 Si 0.90 23.04 29.54 -169.99 -5.02 18.02 16 9 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 10 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 11 H -0.28 -7.07 7.11 56.52 0.40 -6.67 16 12 C 0.51 13.31 7.73 -11.69 -0.09 13.22 16 13 O -0.51 -14.94 16.47 5.46 0.09 -14.85 16 14 C 0.48 10.77 7.66 -12.40 -0.09 10.68 16 15 O -0.58 -11.69 10.49 5.15 0.05 -11.64 16 16 N -0.61 -12.42 10.34 -11.99 -0.12 -12.54 16 17 C 0.48 7.40 7.72 -155.17 -1.20 6.20 16 18 C -0.26 -2.92 9.73 -39.64 -0.39 -3.31 16 19 C 0.21 1.65 6.63 -81.69 -0.54 1.11 16 20 C -0.12 -0.48 5.96 -91.73 -0.55 -1.03 16 21 C -0.15 -0.52 10.03 -26.74 -0.27 -0.79 16 22 C -0.15 -0.51 10.04 -26.69 -0.27 -0.78 16 23 N -0.39 -3.13 4.05 -63.58 -0.26 -3.39 16 24 C 0.09 0.30 11.20 59.85 0.67 0.97 16 25 N -0.48 -6.01 6.91 31.31 0.22 -5.80 16 26 H 0.45 5.93 6.36 -182.55 -1.16 4.77 16 27 H 0.04 0.76 8.14 -51.93 -0.42 0.34 16 28 H 0.06 1.28 8.03 -51.93 -0.42 0.86 16 29 H 0.09 1.79 5.35 -51.94 -0.28 1.52 16 30 H 0.04 1.02 8.07 -51.93 -0.42 0.60 16 31 H 0.05 1.49 7.37 -51.93 -0.38 1.11 16 32 H 0.26 7.73 8.31 -40.82 -0.34 7.39 16 33 H 0.17 1.68 8.05 -52.49 -0.42 1.26 16 34 H 0.12 0.21 7.21 -51.93 -0.37 -0.17 16 35 H 0.11 0.48 7.93 -51.93 -0.41 0.07 16 36 H 0.11 0.20 8.14 -51.93 -0.42 -0.22 16 37 H 0.11 0.20 8.14 -51.93 -0.42 -0.23 16 38 H 0.11 0.46 7.90 -51.93 -0.41 0.05 16 39 H 0.08 0.16 8.14 -51.93 -0.42 -0.27 16 40 H 0.09 0.24 8.14 -51.93 -0.42 -0.18 16 41 H 0.10 0.06 7.20 -51.93 -0.37 -0.32 16 LS Contribution 351.80 15.07 5.30 5.30 Total: -1.00 -40.25 351.80 -8.44 -48.68 By element: Atomic # 1 Polarization: 4.35 SS G_CDS: -6.31 Total: -1.96 kcal Atomic # 6 Polarization: 23.36 SS G_CDS: -2.60 Total: 20.76 kcal Atomic # 7 Polarization: -64.37 SS G_CDS: 0.05 Total: -64.33 kcal Atomic # 8 Polarization: -26.63 SS G_CDS: 0.14 Total: -26.49 kcal Atomic # 14 Polarization: 23.04 SS G_CDS: -5.02 Total: 18.02 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -40.25 -8.44 -48.68 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000354315708.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 134.044 kcal (2) G-P(sol) polarization free energy of solvation -40.246 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 93.798 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.436 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.683 kcal (6) G-S(sol) free energy of system = (1) + (5) 85.361 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds