Wall clock time and date at job start Tue Mar 31 2020 04:42:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.46504 * 119.99856 * 2 1 4 4 C 1.50697 * 109.47173 * 269.99927 * 3 2 1 5 5 H 1.08007 * 119.99683 * 0.02562 * 4 3 2 6 6 C 1.37875 * 120.00096 * 179.97438 * 4 3 2 7 7 N 1.31511 * 120.00245 * 0.02562 * 6 4 3 8 8 Si 1.86803 * 119.99988 * 180.02562 * 6 4 3 9 9 H 1.48496 * 109.47396 * 59.99653 * 8 6 4 10 10 H 1.48492 * 109.47308 * 180.02562 * 8 6 4 11 11 H 1.48507 * 109.47040 * 299.99739 * 8 6 4 12 12 C 1.34771 * 120.00124 * 179.97438 * 2 1 3 13 13 O 1.21392 * 119.99903 * 183.60903 * 12 2 1 14 14 C 1.49241 * 120.00414 * 3.60905 * 12 2 1 15 15 O 1.21747 * 119.99692 * 354.16333 * 14 12 2 16 16 N 1.33164 * 120.00195 * 174.16485 * 14 12 2 17 17 C 1.33386 * 119.99694 * 180.02562 * 16 14 12 18 18 C 1.40854 * 126.34942 * 180.02562 * 17 16 14 19 19 C 1.35305 * 108.22216 * 179.97438 * 18 17 16 20 20 C 1.50701 * 125.55783 * 179.97438 * 19 18 17 21 21 C 1.52995 * 117.50050 * 325.02699 * 20 19 18 22 22 C 1.52997 * 60.03563 * 107.49958 * 21 20 19 23 23 N 1.36210 * 108.88174 * 0.26184 * 19 18 17 24 24 C 1.46497 * 125.86274 * 179.73580 * 23 19 18 25 25 N 1.37277 * 126.35405 * 359.96415 * 17 16 14 26 26 H 0.97002 * 126.33906 * 359.97438 * 25 17 16 27 27 H 1.08994 * 109.47229 * 263.98944 * 1 2 3 28 28 H 1.08996 * 109.46867 * 23.99211 * 1 2 3 29 29 H 1.09003 * 109.46540 * 143.98860 * 1 2 3 30 30 H 1.09006 * 109.46937 * 29.99517 * 3 2 1 31 31 H 1.08995 * 109.46988 * 149.99685 * 3 2 1 32 32 H 0.96996 * 120.00352 * 180.02562 * 7 6 4 33 33 H 1.07998 * 125.88750 * 359.92850 * 18 17 16 34 34 H 1.08997 * 115.55863 * 179.33495 * 20 19 18 35 35 H 1.08997 * 117.50033 * 0.02562 * 21 20 19 36 36 H 1.09001 * 117.50140 * 215.00211 * 21 20 19 37 37 H 1.08999 * 117.49987 * 107.47242 * 22 21 20 38 38 H 1.08996 * 117.50282 * 252.48255 * 22 21 20 39 39 H 1.09003 * 109.47441 * 89.99480 * 24 23 19 40 40 H 1.09000 * 109.47455 * 209.99796 * 24 23 19 41 41 H 1.09006 * 109.47118 * 330.00013 * 24 23 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.4487 1.7038 -1.4208 5 1 2.0974 1.0962 -2.2417 6 6 3.1260 2.8780 -1.6727 7 7 3.5533 3.6182 -0.6732 8 14 3.4367 3.4176 -3.4339 9 1 2.1390 3.5947 -4.1337 10 1 4.1792 4.7036 -3.4340 11 1 4.2395 2.3830 -4.1343 12 6 2.1389 -1.1671 0.0005 13 8 3.3510 -1.1681 0.0667 14 6 1.3951 -2.4584 -0.0803 15 8 0.1783 -2.4635 -0.0394 16 7 2.0622 -3.6050 -0.1969 17 6 1.3972 -4.7590 -0.2696 18 6 1.9637 -6.0426 -0.3937 19 6 0.9581 -6.9469 -0.4341 20 6 1.1258 -8.4390 -0.5624 21 6 2.2827 -8.9483 -1.4243 22 6 2.3525 -9.0722 0.0990 23 7 -0.2309 -6.2881 -0.3462 24 6 -1.5584 -6.9075 -0.3599 25 7 0.0339 -4.9161 -0.2362 26 1 -0.6245 -4.2083 -0.1550 27 1 -0.3633 -0.1076 1.0219 28 1 -0.3633 0.9389 -0.4178 29 1 -0.3632 -0.8313 -0.6042 30 1 1.6083 2.0285 0.5138 31 1 3.1499 1.1385 0.5139 32 1 4.0294 4.4444 -0.8504 33 1 3.0189 -6.2663 -0.4481 34 1 0.2020 -9.0174 -0.5673 35 1 2.9228 -8.2042 -1.8982 36 1 2.1199 -9.8616 -1.9966 37 1 2.2351 -10.0669 0.5290 38 1 3.0384 -8.4097 0.6270 39 1 -1.8588 -7.1457 0.6604 40 1 -2.2777 -6.2157 -0.7983 41 1 -1.5265 -7.8221 -0.9521 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000354315708.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:42:16 Heat of formation + Delta-G solvation = 54.629184 kcal Electronic energy + Delta-G solvation = -24573.998229 eV Core-core repulsion = 20878.707295 eV Total energy + Delta-G solvation = -3695.290935 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 306.148 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -42.87619 -41.29123 -39.37954 -38.05876 -36.85367 -35.58355 -34.64957 -32.74128 -32.31645 -30.06289 -28.12869 -27.34152 -26.11906 -25.09173 -24.14288 -23.15413 -22.15906 -21.01873 -20.08373 -18.81859 -18.75024 -17.96297 -17.61507 -17.16888 -17.12510 -16.79551 -16.58944 -16.29903 -15.42197 -15.17765 -15.11177 -14.92209 -14.49094 -14.22773 -13.84651 -13.82281 -13.59274 -13.51881 -13.25776 -13.00827 -12.86061 -12.62183 -12.42953 -12.32507 -12.23435 -12.21960 -11.76783 -11.42635 -11.37213 -10.90730 -10.67159 -10.34525 -10.03190 -9.53599 -8.83501 -8.25365 -6.41614 -0.37455 0.34612 0.67995 1.34706 1.40960 1.48215 1.65951 1.91976 2.37506 2.54654 2.78316 3.02918 3.04102 3.09297 3.30995 3.74585 3.86442 3.98059 4.09056 4.28200 4.33524 4.37141 4.44925 4.52543 4.60834 4.65673 4.87856 4.90828 4.94303 4.96223 5.05464 5.13380 5.22785 5.36756 5.36910 5.48333 5.68148 5.75094 5.99590 6.06403 6.33519 6.52048 6.64815 7.07999 7.28892 7.45284 8.82452 Molecular weight = 306.15amu Principal moments of inertia in cm(-1) A = 0.024170 B = 0.002862 C = 0.002744 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1158.186740 B = 9780.823324 C =10201.349843 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.081 3.919 2 N -0.586 5.586 3 C 0.256 3.744 4 C -0.552 4.552 5 H 0.049 0.951 6 C 0.009 3.991 7 N -0.926 5.926 8 Si 0.975 3.025 9 H -0.260 1.260 10 H -0.271 1.271 11 H -0.277 1.277 12 C 0.496 3.504 13 O -0.558 6.558 14 C 0.481 3.519 15 O -0.587 6.587 16 N -0.648 5.648 17 C 0.447 3.553 18 C -0.287 4.287 19 C 0.243 3.757 20 C -0.122 4.122 21 C -0.151 4.151 22 C -0.150 4.150 23 N -0.363 5.363 24 C 0.076 3.924 25 N -0.483 5.483 26 H 0.452 0.548 27 H 0.059 0.941 28 H 0.066 0.934 29 H 0.099 0.901 30 H 0.032 0.968 31 H 0.004 0.996 32 H 0.270 0.730 33 H 0.177 0.823 34 H 0.160 0.840 35 H 0.095 0.905 36 H 0.130 0.870 37 H 0.130 0.870 38 H 0.095 0.905 39 H 0.100 0.900 40 H 0.097 0.903 41 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.090 -34.770 -0.497 37.520 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 N -0.318 5.318 3 C 0.135 3.865 4 C -0.590 4.590 5 H 0.068 0.932 6 C -0.190 4.190 7 N -0.565 5.565 8 Si 0.798 3.202 9 H -0.185 1.185 10 H -0.196 1.196 11 H -0.202 1.202 12 C 0.279 3.721 13 O -0.436 6.436 14 C 0.263 3.737 15 O -0.471 6.471 16 N -0.413 5.413 17 C 0.201 3.799 18 C -0.316 4.316 19 C 0.118 3.882 20 C -0.142 4.142 21 C -0.188 4.188 22 C -0.187 4.187 23 N -0.150 5.150 24 C -0.062 4.062 25 N -0.217 5.217 26 H 0.310 0.690 27 H 0.078 0.922 28 H 0.085 0.915 29 H 0.117 0.883 30 H 0.050 0.950 31 H 0.023 0.977 32 H 0.079 0.921 33 H 0.194 0.806 34 H 0.178 0.822 35 H 0.113 0.887 36 H 0.148 0.852 37 H 0.148 0.852 38 H 0.114 0.886 39 H 0.118 0.882 40 H 0.115 0.885 41 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -13.880 -34.295 -0.359 36.999 hybrid contribution -0.494 1.767 -0.385 1.874 sum -14.374 -32.529 -0.744 35.571 Atomic orbital electron populations 1.22230 0.77519 1.03789 1.02519 1.48153 1.08854 1.05963 1.68874 1.18969 0.91314 0.79376 0.96802 1.21605 1.37821 1.07091 0.92467 0.93243 1.25918 0.94416 0.95994 1.02670 1.70045 1.38448 1.14727 1.33273 0.85373 0.78913 0.77539 0.78402 1.18454 1.19552 1.20222 1.20203 0.87469 0.85551 0.78833 1.90627 1.15473 1.87622 1.49907 1.20761 0.85752 0.89536 0.77612 1.90237 1.16124 1.88669 1.52066 1.69932 1.33679 0.95597 1.42119 1.21083 0.79125 0.94779 0.84921 1.20646 1.01724 0.86857 1.22380 1.20731 0.82419 0.94797 0.90269 1.20906 0.98188 0.84347 1.10713 1.23279 0.97565 1.03733 0.94243 1.23288 0.96477 1.03011 0.95964 1.47224 1.08671 0.94272 1.64859 1.22791 0.76889 1.00187 1.06346 1.47512 1.09064 0.98117 1.66968 0.69035 0.92226 0.91492 0.88280 0.95046 0.97745 0.92068 0.80598 0.82220 0.88697 0.85200 0.85209 0.88625 0.88208 0.88485 0.84224 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 3.49 9.55 127.77 1.22 4.71 16 2 N -0.59 -31.80 2.86 -852.95 -2.44 -34.24 16 3 C 0.26 15.82 5.16 85.63 0.44 16.26 16 4 C -0.55 -35.29 9.39 25.60 0.24 -35.05 16 5 H 0.05 3.16 7.81 -2.91 -0.02 3.14 16 6 C 0.01 0.58 5.46 84.65 0.46 1.04 16 7 N -0.93 -59.25 13.29 21.45 0.28 -58.97 16 8 Si 0.97 47.88 29.54 68.60 2.03 49.91 16 9 H -0.26 -12.00 7.11 99.48 0.71 -11.30 16 10 H -0.27 -12.56 7.11 99.48 0.71 -11.85 16 11 H -0.28 -13.60 7.11 99.48 0.71 -12.90 16 12 C 0.50 27.81 7.73 87.21 0.67 28.48 16 13 O -0.56 -35.66 16.47 -3.38 -0.06 -35.71 16 14 C 0.48 22.67 7.66 87.45 0.67 23.34 16 15 O -0.59 -24.26 10.49 -4.50 -0.05 -24.31 16 16 N -0.65 -28.24 10.34 -310.95 -3.21 -31.45 16 17 C 0.45 14.16 7.72 133.77 1.03 15.19 16 18 C -0.29 -6.28 9.73 22.23 0.22 -6.06 16 19 C 0.24 3.07 6.63 41.20 0.27 3.35 16 20 C -0.12 -0.39 5.96 -11.52 -0.07 -0.46 16 21 C -0.15 -0.47 10.03 30.59 0.31 -0.16 16 22 C -0.15 -0.46 10.04 30.62 0.31 -0.15 16 23 N -0.36 -4.65 4.05 -355.07 -1.44 -6.09 16 24 C 0.08 0.09 11.20 127.77 1.43 1.52 16 25 N -0.48 -11.64 6.91 -54.85 -0.38 -12.02 16 26 H 0.45 11.59 6.36 -213.28 -1.36 10.23 16 27 H 0.06 2.31 8.14 -2.39 -0.02 2.29 16 28 H 0.07 2.78 8.03 -2.39 -0.02 2.76 16 29 H 0.10 4.09 5.35 -2.52 -0.01 4.08 16 30 H 0.03 1.92 8.07 -2.38 -0.02 1.90 16 31 H 0.00 0.31 7.37 -2.39 -0.02 0.29 16 32 H 0.27 16.05 8.31 -92.71 -0.77 15.28 16 33 H 0.18 3.54 8.05 -2.91 -0.02 3.52 16 34 H 0.16 -0.61 7.21 -2.39 -0.02 -0.62 16 35 H 0.09 0.64 7.93 -2.39 -0.02 0.62 16 36 H 0.13 -0.14 8.14 -2.39 -0.02 -0.16 16 37 H 0.13 -0.14 8.14 -2.39 -0.02 -0.16 16 38 H 0.10 0.62 7.90 -2.39 -0.02 0.60 16 39 H 0.10 -0.15 8.14 -2.39 -0.02 -0.17 16 40 H 0.10 0.09 8.14 -2.39 -0.02 0.07 16 41 H 0.14 -0.81 7.20 -2.38 -0.02 -0.82 16 Total: -1.00 -95.72 351.80 1.66 -94.06 By element: Atomic # 1 Polarization: 7.09 SS G_CDS: -0.29 Total: 6.80 kcal Atomic # 6 Polarization: 44.80 SS G_CDS: 7.21 Total: 52.01 kcal Atomic # 7 Polarization: -135.58 SS G_CDS: -7.18 Total: -142.76 kcal Atomic # 8 Polarization: -59.92 SS G_CDS: -0.10 Total: -60.02 kcal Atomic # 14 Polarization: 47.88 SS G_CDS: 2.03 Total: 49.91 kcal Total: -95.72 1.66 -94.06 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000354315708.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 148.690 kcal (2) G-P(sol) polarization free energy of solvation -95.720 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.970 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.659 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -94.061 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.629 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds