Wall clock time and date at job start Tue Mar 31 2020 04:37:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46506 * 1 3 3 C 1.34267 * 125.38935 * 2 1 4 4 C 1.38209 * 108.39433 * 179.97438 * 3 2 1 5 5 C 1.47388 * 126.46549 * 179.97438 * 4 3 2 6 6 N 1.34778 * 119.99536 * 0.30677 * 5 4 3 7 7 O 1.21612 * 120.00298 * 180.02562 * 5 4 3 8 8 C 1.41306 * 107.07508 * 0.24582 * 4 3 2 9 9 C 1.36353 * 107.00867 * 359.60828 * 8 4 3 10 10 C 1.46810 * 125.85043 * 180.16634 * 9 8 4 11 11 O 1.21678 * 120.00150 * 185.71816 * 10 9 8 12 12 N 1.34777 * 119.99985 * 5.71050 * 10 9 8 13 13 C 1.46499 * 120.00406 * 185.20742 * 12 10 9 14 14 H 1.09000 * 112.84691 * 25.33229 * 13 12 10 15 15 C 1.53778 * 113.61828 * 156.53154 * 13 12 10 16 16 C 1.53786 * 87.08205 * 139.98077 * 15 13 12 17 17 H 1.08997 * 113.61023 * 219.93497 * 16 15 13 18 18 N 1.46497 * 113.61268 * 89.11991 * 16 15 13 19 19 C 1.36935 * 120.00026 * 154.99890 * 18 16 15 20 20 H 1.07996 * 119.99984 * 359.97438 * 19 18 16 21 21 C 1.38813 * 120.00049 * 179.97438 * 19 18 16 22 22 N 1.31620 * 119.99649 * 0.02562 * 21 19 18 23 23 Si 1.86794 * 120.00077 * 179.97438 * 21 19 18 24 24 H 1.48498 * 109.47269 * 0.02562 * 23 21 19 25 25 H 1.48506 * 109.46954 * 120.00470 * 23 21 19 26 26 H 1.48500 * 109.47516 * 240.00198 * 23 21 19 27 27 C 1.53782 * 113.61356 * 254.13866 * 13 12 10 28 28 H 1.08999 * 109.47034 * 86.04542 * 1 2 3 29 29 H 1.08998 * 109.46996 * 206.04920 * 1 2 3 30 30 H 1.09001 * 109.46796 * 326.04688 * 1 2 3 31 31 H 1.07999 * 125.80125 * 359.97233 * 3 2 1 32 32 H 0.97002 * 119.99716 * 179.72392 * 6 5 4 33 33 H 0.97004 * 120.00421 * 359.71919 * 6 5 4 34 34 H 1.08001 * 126.49895 * 179.73334 * 8 4 3 35 35 H 0.97006 * 120.00103 * 5.21241 * 12 10 9 36 36 H 1.08995 * 113.61518 * 254.53359 * 15 13 12 37 37 H 1.09002 * 113.61408 * 25.43207 * 15 13 12 38 38 H 0.97004 * 119.99706 * 334.99722 * 18 16 15 39 39 H 0.97007 * 119.99417 * 179.97438 * 22 21 19 40 40 H 1.08993 * 113.61761 * 334.56759 * 27 13 12 41 41 H 1.09008 * 113.61404 * 105.46817 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.2426 1.0946 0.0000 4 6 3.5644 0.6906 0.0006 5 6 4.7486 1.5681 0.0003 6 7 4.5950 2.9071 0.0056 7 8 5.8642 1.0840 0.0004 8 6 3.5664 -0.7224 -0.0048 9 6 2.2630 -1.1231 0.0004 10 6 1.7909 -2.5132 0.0010 11 8 0.6020 -2.7520 -0.0990 12 7 2.6744 -3.5250 0.1122 13 6 2.2176 -4.9123 -0.0016 14 1 1.3026 -5.0100 -0.5859 15 6 3.3249 -5.8930 -0.4222 16 6 2.7237 -6.8829 0.5896 17 1 3.4723 -7.4426 1.1503 18 7 1.6794 -7.7397 0.0226 19 6 1.4144 -8.9597 0.5852 20 1 1.9756 -9.2904 1.4466 21 6 0.4246 -9.7714 0.0483 22 7 -0.2590 -9.3685 -1.0018 23 14 0.0636 -11.4359 0.8153 24 1 0.9642 -11.6518 1.9762 25 1 -1.3491 -11.4749 1.2714 26 1 0.2884 -12.5041 -0.1914 27 6 2.1728 -5.6582 1.3425 28 1 -0.3633 0.0709 -1.0252 29 1 -0.3633 -0.9233 0.4513 30 1 -0.3633 0.8525 0.5740 31 1 1.8944 2.1169 -0.0004 32 1 5.3743 3.4847 0.0094 33 1 3.7051 3.2933 0.0055 34 1 4.4354 -1.3636 -0.0099 35 1 3.6128 -3.3346 0.2677 36 1 3.2447 -6.2241 -1.4575 37 1 4.3283 -5.5568 -0.1607 38 1 1.1756 -7.4428 -0.7513 39 1 -0.9505 -9.9359 -1.3772 40 1 2.8605 -5.2578 2.0872 41 1 1.1637 -5.8002 1.7297 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001020353821.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:37:39 Heat of formation + Delta-G solvation = 7.487710 kcal Electronic energy + Delta-G solvation = -24174.097816 eV Core-core repulsion = 20476.762674 eV Total energy + Delta-G solvation = -3697.335143 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 306.148 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.92593 -39.64010 -39.03040 -37.76807 -34.27905 -33.96917 -33.25962 -32.45633 -30.11484 -29.28619 -27.19367 -25.10415 -24.72238 -23.53241 -23.10844 -21.85298 -20.15426 -19.82781 -18.93485 -18.17794 -17.38010 -17.22655 -16.24330 -16.04135 -15.98487 -15.75787 -14.88672 -14.72314 -14.55519 -14.34198 -13.97946 -13.86698 -13.64451 -13.12406 -12.80633 -12.73403 -12.57227 -12.49989 -12.07974 -11.97072 -11.62991 -10.89132 -10.79563 -10.35280 -10.27290 -10.13157 -10.00911 -9.97359 -9.73773 -9.66723 -9.17027 -8.93342 -8.85119 -8.55693 -7.00392 -5.79412 -3.09226 1.21263 1.54647 2.28927 3.14226 3.22779 3.39826 3.42953 3.45321 3.48538 3.50939 4.37481 4.41428 4.56395 4.62387 4.85224 4.88765 4.96063 5.06593 5.24410 5.34113 5.40371 5.47205 5.47671 5.67642 5.87914 5.97027 6.11453 6.17898 6.20206 6.37363 6.47210 6.50220 6.61720 6.71051 6.73022 6.77806 7.02796 7.09100 7.60121 7.70415 8.07264 8.24044 8.38903 9.49784 10.06052 10.40044 11.42869 Molecular weight = 306.15amu Principal moments of inertia in cm(-1) A = 0.029857 B = 0.002506 C = 0.002360 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 937.590960 B =11169.321273 C =11860.165793 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.058 3.942 2 N -0.395 5.395 3 C 0.059 3.941 4 C -0.237 4.237 5 C 0.595 3.405 6 N -0.857 5.857 7 O -0.547 6.547 8 C -0.080 4.080 9 C -0.048 4.048 10 C 0.583 3.417 11 O -0.544 6.544 12 N -0.702 5.702 13 C 0.128 3.872 14 H 0.114 0.886 15 C -0.164 4.164 16 C 0.171 3.829 17 H 0.070 0.930 18 N -0.706 5.706 19 C -0.243 4.243 20 H 0.074 0.926 21 C -0.012 4.012 22 N -0.930 5.930 23 Si 0.909 3.091 24 H -0.280 1.280 25 H -0.291 1.291 26 H -0.291 1.291 27 C -0.183 4.183 28 H 0.082 0.918 29 H 0.112 0.888 30 H 0.085 0.915 31 H 0.177 0.823 32 H 0.403 0.597 33 H 0.397 0.603 34 H 0.155 0.845 35 H 0.400 0.600 36 H 0.074 0.926 37 H 0.081 0.919 38 H 0.386 0.614 39 H 0.256 0.744 40 H 0.070 0.930 41 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.750 26.843 2.051 27.528 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 N -0.065 5.065 3 C -0.083 4.083 4 C -0.247 4.247 5 C 0.383 3.617 6 N -0.420 5.420 7 O -0.424 6.424 8 C -0.105 4.105 9 C -0.160 4.160 10 C 0.370 3.630 11 O -0.423 6.423 12 N -0.352 5.352 13 C 0.024 3.976 14 H 0.131 0.869 15 C -0.204 4.204 16 C 0.058 3.942 17 H 0.088 0.912 18 N -0.344 5.344 19 C -0.375 4.375 20 H 0.092 0.908 21 C -0.209 4.209 22 N -0.578 5.578 23 Si 0.740 3.260 24 H -0.205 1.205 25 H -0.218 1.218 26 H -0.218 1.218 27 C -0.225 4.225 28 H 0.101 0.899 29 H 0.131 0.869 30 H 0.103 0.897 31 H 0.194 0.806 32 H 0.233 0.767 33 H 0.225 0.775 34 H 0.173 0.827 35 H 0.235 0.765 36 H 0.093 0.907 37 H 0.099 0.901 38 H 0.220 0.780 39 H 0.066 0.934 40 H 0.089 0.911 41 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 5.105 25.883 2.039 26.460 hybrid contribution -0.244 0.027 0.159 0.293 sum 4.860 25.910 2.198 26.454 Atomic orbital electron populations 1.22485 0.75156 1.06219 1.04430 1.43626 1.07532 1.04852 1.50476 1.22339 0.89798 0.92007 1.04121 1.19484 0.91633 0.94328 1.19260 1.17411 0.87920 0.81794 0.74624 1.43684 1.12151 1.07079 1.79079 1.90826 1.25939 1.75226 1.50424 1.21131 0.94895 0.93910 1.00590 1.19959 0.89982 0.88162 1.17858 1.17007 0.86051 0.83201 0.76768 1.90804 1.15737 1.84918 1.50868 1.45849 1.10927 1.06223 1.72168 1.22713 0.99080 0.76521 0.99250 0.86855 1.23911 0.97427 0.97253 1.01776 1.20950 0.91382 0.89074 0.92772 0.91229 1.42209 1.39752 1.17212 1.35223 1.19320 1.15018 0.93164 1.09949 0.90844 1.24787 0.98921 0.99004 0.98158 1.69682 1.25998 1.37708 1.24424 0.86089 0.77742 0.83892 0.78274 1.20472 1.21842 1.21826 1.24348 1.02533 0.99533 0.96135 0.89901 0.86934 0.89681 0.80598 0.76660 0.77453 0.82742 0.76538 0.90700 0.90079 0.77997 0.93446 0.91135 0.90971 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.44 10.59 59.85 0.63 1.08 16 2 N -0.39 -3.78 3.12 -120.12 -0.38 -4.16 16 3 C 0.06 0.43 10.88 -16.50 -0.18 0.25 16 4 C -0.24 -2.33 6.13 -105.02 -0.64 -2.98 16 5 C 0.60 6.05 8.09 -12.54 -0.10 5.95 16 6 N -0.86 -4.50 8.86 30.42 0.27 -4.23 16 7 O -0.55 -7.94 17.76 5.27 0.09 -7.85 16 8 C -0.08 -0.90 10.09 -39.10 -0.39 -1.29 16 9 C -0.05 -0.58 6.82 -82.41 -0.56 -1.14 16 10 C 0.58 8.58 7.77 -12.79 -0.10 8.48 16 11 O -0.54 -9.74 14.23 5.21 0.07 -9.66 16 12 N -0.70 -9.52 5.33 -54.28 -0.29 -9.81 16 13 C 0.13 2.10 4.05 -67.12 -0.27 1.82 16 14 H 0.11 2.21 7.57 -51.93 -0.39 1.82 16 15 C -0.16 -2.57 7.58 -25.92 -0.20 -2.77 16 16 C 0.17 3.32 4.57 -67.03 -0.31 3.02 16 17 H 0.07 1.32 8.10 -51.93 -0.42 0.90 16 18 N -0.71 -17.56 5.31 -52.55 -0.28 -17.84 16 19 C -0.24 -6.72 9.97 -15.06 -0.15 -6.87 16 20 H 0.07 1.96 7.83 -52.49 -0.41 1.55 16 21 C -0.01 -0.36 5.50 -17.43 -0.10 -0.45 16 22 N -0.93 -28.16 13.06 55.49 0.72 -27.44 16 23 Si 0.91 22.37 29.55 -169.99 -5.02 17.34 16 24 H -0.28 -6.64 7.11 56.52 0.40 -6.23 16 25 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 26 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 27 C -0.18 -3.21 7.69 -25.83 -0.20 -3.41 16 28 H 0.08 0.58 8.14 -51.93 -0.42 0.15 16 29 H 0.11 1.18 6.15 -51.93 -0.32 0.86 16 30 H 0.08 0.37 8.14 -51.93 -0.42 -0.06 16 31 H 0.18 0.44 7.44 -52.49 -0.39 0.05 16 32 H 0.40 1.68 8.93 -40.82 -0.36 1.32 16 33 H 0.40 0.79 7.74 -40.82 -0.32 0.47 16 34 H 0.15 1.60 7.44 -52.49 -0.39 1.21 16 35 H 0.40 4.31 7.61 -40.82 -0.31 4.00 16 36 H 0.07 1.25 8.14 -51.93 -0.42 0.83 16 37 H 0.08 1.03 8.11 -51.93 -0.42 0.61 16 38 H 0.39 10.26 7.90 -40.82 -0.32 9.93 16 39 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 40 H 0.07 1.07 8.14 -51.93 -0.42 0.65 16 41 H 0.07 1.46 8.14 -51.92 -0.42 1.04 16 LS Contribution 352.09 15.07 5.31 5.31 Total: -1.00 -36.65 352.09 -7.37 -44.02 By element: Atomic # 1 Polarization: 17.93 SS G_CDS: -5.31 Total: 12.63 kcal Atomic # 6 Polarization: 4.26 SS G_CDS: -2.57 Total: 1.69 kcal Atomic # 7 Polarization: -63.53 SS G_CDS: 0.05 Total: -63.48 kcal Atomic # 8 Polarization: -17.68 SS G_CDS: 0.17 Total: -17.51 kcal Atomic # 14 Polarization: 22.37 SS G_CDS: -5.02 Total: 17.34 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -36.65 -7.37 -44.02 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001020353821.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.512 kcal (2) G-P(sol) polarization free energy of solvation -36.650 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.861 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.374 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.024 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.488 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds