Wall clock time and date at job start Tue Mar 31 2020 04:54:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.46497 * 120.00531 * 2 1 4 4 C 1.53004 * 109.47121 * 95.74532 * 3 2 1 5 5 H 1.09002 * 112.96259 * 68.62050 * 4 3 2 6 6 C 1.53941 * 113.77069 * 296.93932 * 4 3 2 7 7 C 1.53950 * 86.29038 * 222.09104 * 6 4 3 8 8 N 1.47585 * 113.76857 * 200.29498 * 4 3 2 9 9 C 1.36931 * 134.49099 * 318.93337 * 8 4 3 10 10 H 1.08001 * 120.00633 * 5.70246 * 9 8 4 11 11 C 1.38820 * 119.99706 * 185.69603 * 9 8 4 12 12 N 1.31617 * 120.00161 * 0.02562 * 11 9 8 13 13 Si 1.86797 * 119.99752 * 180.02562 * 11 9 8 14 14 H 1.48496 * 109.47385 * 90.00548 * 13 11 9 15 15 H 1.48504 * 109.46962 * 210.00348 * 13 11 9 16 16 H 1.48500 * 109.47324 * 330.00231 * 13 11 9 17 17 C 1.34782 * 119.99698 * 179.72034 * 2 1 3 18 18 O 1.21568 * 119.99840 * 184.77143 * 17 2 1 19 19 C 1.47724 * 119.99704 * 4.77579 * 17 2 1 20 20 C 1.40940 * 125.97142 * 183.29137 * 19 17 2 21 21 C 1.36167 * 107.95264 * 179.75006 * 20 19 17 22 22 N 1.35801 * 107.31169 * 0.76657 * 21 20 19 23 23 N 1.31834 * 125.97536 * 3.60246 * 19 17 2 24 24 C 1.47426 * 108.07251 * 178.98709 * 22 21 20 25 25 C 1.54643 * 102.35459 * 344.74326 * 24 22 21 26 26 O 1.36129 * 140.88573 * 180.76146 * 21 20 19 27 27 H 1.09001 * 109.47290 * 95.65638 * 1 2 3 28 28 H 1.09001 * 109.47578 * 215.65926 * 1 2 3 29 29 H 1.09006 * 109.47279 * 335.66261 * 1 2 3 30 30 H 1.08991 * 109.47450 * 215.75182 * 3 2 1 31 31 H 1.09000 * 109.46769 * 335.74990 * 3 2 1 32 32 H 1.09000 * 113.74313 * 336.43695 * 6 4 3 33 33 H 1.08999 * 113.73938 * 107.63953 * 6 4 3 34 34 H 1.08996 * 113.76813 * 137.91052 * 7 6 4 35 35 H 1.08999 * 113.76996 * 269.19626 * 7 6 4 36 36 H 0.96989 * 120.00178 * 179.97438 * 12 11 9 37 37 H 1.08008 * 126.02299 * 359.88996 * 20 19 17 38 38 H 1.08999 * 110.83005 * 102.95941 * 24 22 21 39 39 H 1.09000 * 110.82672 * 226.52711 * 24 22 21 40 40 H 1.08995 * 110.85392 * 266.64468 * 25 24 22 41 41 H 1.09003 * 111.02713 * 143.09041 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1976 1.2686 0.0000 4 6 2.5777 1.6381 1.4353 5 1 3.3267 0.9709 1.8620 6 6 1.3672 1.8811 2.3548 7 6 2.1541 3.0839 2.9062 8 7 2.8825 3.0702 1.6200 9 6 3.5648 4.0079 0.8918 10 1 3.9417 3.7602 -0.0895 11 6 3.7720 5.2769 1.4149 12 7 3.3131 5.5788 2.6109 13 14 4.7022 6.5562 0.4211 14 1 3.7454 7.3270 -0.4128 15 1 5.4109 7.4798 1.3431 16 1 5.6899 5.8789 -0.4568 17 6 2.1388 -1.1673 0.0057 18 8 3.3513 -1.1687 0.0933 19 6 1.4039 -2.4448 -0.0946 20 6 1.9718 -3.7334 -0.0353 21 6 0.9651 -4.6418 -0.1603 22 7 -0.1911 -3.9456 -0.3104 23 7 0.1030 -2.5789 -0.2609 24 6 -1.2906 -4.9144 -0.4719 25 6 -0.5329 -6.2257 -0.7846 26 8 0.7523 -5.9862 -0.1823 27 1 -0.3634 -0.1013 -1.0227 28 1 -0.3634 -0.8350 0.5991 29 1 -0.3634 0.9364 0.4235 30 1 3.1014 1.1663 -0.6004 31 1 1.5678 2.0518 -0.4221 32 1 0.4588 2.1588 1.8202 33 1 1.2049 1.0885 3.0853 34 1 1.5451 3.9749 3.0581 35 1 2.7781 2.8434 3.7669 36 1 3.4581 6.4653 2.9765 37 1 3.0203 -3.9603 0.0896 38 1 -1.8632 -5.0082 0.4508 39 1 -1.9367 -4.6323 -1.3033 40 1 -0.4363 -6.3709 -1.8605 41 1 -1.0247 -7.0814 -0.3219 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001085643577.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:54:08 Heat of formation + Delta-G solvation = 112.802689 kcal Electronic energy + Delta-G solvation = -25025.792503 eV Core-core repulsion = 21333.024161 eV Total energy + Delta-G solvation = -3692.768342 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 306.148 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -42.56920 -39.92872 -38.56630 -37.57478 -35.15580 -33.61049 -32.08360 -30.51159 -29.13080 -28.40135 -27.76733 -26.42286 -24.54960 -23.27730 -23.03090 -21.85482 -21.50343 -19.29646 -18.85111 -17.87685 -17.21727 -16.72291 -16.51843 -16.10066 -15.58473 -15.49632 -15.10097 -14.73364 -14.53087 -14.07011 -13.88441 -13.46728 -13.39563 -13.11122 -12.77412 -12.73057 -12.51212 -12.27571 -12.06791 -11.70329 -11.31686 -11.06718 -10.89150 -10.71204 -10.61440 -10.37646 -9.98919 -9.79627 -9.64618 -9.46762 -9.39712 -8.77619 -8.71563 -8.27828 -6.77872 -5.69047 -3.00224 1.14634 1.55006 1.91581 2.45061 3.17610 3.42390 3.44851 3.50032 3.51024 3.52381 4.06566 4.14905 4.42307 4.54532 4.59297 4.75689 4.95610 4.99109 5.24451 5.33481 5.40866 5.52384 5.63364 5.65399 5.69314 5.89083 5.93465 6.05739 6.20643 6.26913 6.34047 6.52486 6.55197 6.71799 6.79271 6.91794 7.21515 7.34167 7.49586 7.60258 7.65842 8.06440 8.29175 9.13320 9.79599 10.70714 11.48982 Molecular weight = 306.15amu Principal moments of inertia in cm(-1) A = 0.037257 B = 0.002815 C = 0.002754 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 751.362332 B = 9945.887965 C =10163.230516 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.080 3.920 2 N -0.590 5.590 3 C 0.120 3.880 4 C 0.129 3.871 5 H 0.051 0.949 6 C -0.160 4.160 7 C 0.166 3.834 8 N -0.602 5.602 9 C -0.220 4.220 10 H 0.080 0.920 11 C -0.008 4.008 12 N -0.922 5.922 13 Si 0.909 3.091 14 H -0.289 1.289 15 H -0.291 1.291 16 H -0.281 1.281 17 C 0.592 3.408 18 O -0.518 6.518 19 C 0.064 3.936 20 C -0.212 4.212 21 C 0.231 3.769 22 N -0.419 5.419 23 N -0.214 5.214 24 C 0.098 3.902 25 C 0.041 3.959 26 O -0.280 6.280 27 H 0.055 0.945 28 H 0.082 0.918 29 H 0.077 0.923 30 H 0.076 0.924 31 H 0.087 0.913 32 H 0.071 0.929 33 H 0.048 0.952 34 H 0.066 0.934 35 H 0.027 0.973 36 H 0.252 0.748 37 H 0.165 0.835 38 H 0.105 0.895 39 H 0.112 0.888 40 H 0.093 0.907 41 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.786 -23.939 -6.642 28.411 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 N -0.322 5.322 3 C -0.003 4.003 4 C 0.021 3.979 5 H 0.068 0.932 6 C -0.198 4.198 7 C 0.040 3.960 8 N -0.329 5.329 9 C -0.348 4.348 10 H 0.097 0.903 11 C -0.205 4.205 12 N -0.569 5.569 13 Si 0.739 3.261 14 H -0.216 1.216 15 H -0.217 1.217 16 H -0.206 1.206 17 C 0.376 3.624 18 O -0.392 6.392 19 C -0.102 4.102 20 C -0.242 4.242 21 C 0.064 3.936 22 N -0.216 5.216 23 N -0.044 5.044 24 C -0.023 4.023 25 C -0.035 4.035 26 O -0.187 6.187 27 H 0.074 0.926 28 H 0.100 0.900 29 H 0.095 0.905 30 H 0.094 0.906 31 H 0.106 0.894 32 H 0.090 0.910 33 H 0.067 0.933 34 H 0.084 0.916 35 H 0.045 0.955 36 H 0.062 0.938 37 H 0.183 0.817 38 H 0.123 0.877 39 H 0.130 0.870 40 H 0.111 0.889 41 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -14.089 -23.161 -6.732 27.933 hybrid contribution 1.018 0.180 -0.372 1.099 sum -13.071 -22.981 -7.104 27.376 Atomic orbital electron populations 1.22055 0.78789 1.03421 1.02086 1.47701 1.07531 1.05762 1.71197 1.21870 0.96789 0.82310 0.99357 1.22539 0.94357 0.88387 0.92631 0.93154 1.23774 0.97558 0.99402 0.99050 1.22128 0.91071 0.94339 0.88416 1.46121 1.63057 1.02722 1.21005 1.19034 1.28014 0.90354 0.97383 0.90269 1.24794 1.01245 0.97809 0.96638 1.69830 1.50269 1.20456 1.16353 0.86165 0.79550 0.81510 0.78840 1.21645 1.21736 1.20649 1.16879 0.86215 0.81373 0.77899 1.90839 1.12662 1.86110 1.49576 1.22073 0.90668 0.94931 1.02552 1.20080 0.98993 0.87385 1.17762 1.20761 0.90105 0.81907 1.00874 1.50900 1.07311 1.04785 1.58562 1.77990 1.14304 0.87969 1.24179 1.23215 0.89210 0.84654 1.05187 1.24446 0.80749 0.97682 1.00635 1.87146 1.37402 1.16593 1.77536 0.92618 0.89990 0.90456 0.90555 0.89425 0.91004 0.93344 0.91608 0.95487 0.93751 0.81714 0.87715 0.87001 0.88858 0.85250 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.02 9.01 59.85 0.54 1.56 16 2 N -0.59 -9.54 2.75 -182.74 -0.50 -10.04 16 3 C 0.12 2.26 5.21 -4.04 -0.02 2.24 16 4 C 0.13 2.80 4.54 -66.86 -0.30 2.49 16 5 H 0.05 1.19 8.14 -51.93 -0.42 0.77 16 6 C -0.16 -3.13 7.28 -25.79 -0.19 -3.31 16 7 C 0.17 4.05 7.39 -2.84 -0.02 4.03 16 8 N -0.60 -15.83 3.58 -169.71 -0.61 -16.44 16 9 C -0.22 -6.28 10.51 -15.06 -0.16 -6.43 16 10 H 0.08 2.18 7.83 -52.49 -0.41 1.77 16 11 C -0.01 -0.25 5.50 -17.43 -0.10 -0.34 16 12 N -0.92 -27.97 11.56 55.49 0.64 -27.33 16 13 Si 0.91 22.64 29.55 -169.99 -5.02 17.62 16 14 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 15 H -0.29 -7.32 7.11 56.52 0.40 -6.92 16 16 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 17 C 0.59 10.19 7.62 -12.38 -0.09 10.10 16 18 O -0.52 -10.57 16.63 5.31 0.09 -10.48 16 19 C 0.06 0.95 6.76 -82.97 -0.56 0.39 16 20 C -0.21 -2.87 10.60 -39.30 -0.42 -3.29 16 21 C 0.23 2.63 8.32 -16.54 -0.14 2.50 16 22 N -0.42 -4.38 5.01 -59.64 -0.30 -4.68 16 23 N -0.21 -2.79 9.35 33.31 0.31 -2.48 16 24 C 0.10 0.46 8.10 -2.67 -0.02 0.44 16 25 C 0.04 0.15 8.08 38.02 0.31 0.45 16 26 O -0.28 -2.48 11.19 -20.15 -0.23 -2.71 16 27 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 28 H 0.08 1.03 5.81 -51.93 -0.30 0.73 16 29 H 0.08 0.95 6.57 -51.93 -0.34 0.61 16 30 H 0.08 1.54 7.68 -51.93 -0.40 1.14 16 31 H 0.09 1.62 8.03 -51.93 -0.42 1.21 16 32 H 0.07 1.30 6.78 -51.93 -0.35 0.95 16 33 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 34 H 0.07 1.73 7.45 -51.93 -0.39 1.34 16 35 H 0.03 0.69 8.14 -51.93 -0.42 0.26 16 36 H 0.25 7.42 8.31 -40.82 -0.34 7.08 16 37 H 0.17 2.12 8.06 -52.48 -0.42 1.69 16 38 H 0.10 0.33 8.14 -51.93 -0.42 -0.10 16 39 H 0.11 0.29 8.14 -51.93 -0.42 -0.13 16 40 H 0.09 0.21 8.14 -51.93 -0.42 -0.21 16 41 H 0.13 0.03 8.14 -51.93 -0.42 -0.39 16 LS Contribution 341.52 15.07 5.15 5.15 Total: -1.00 -36.08 341.52 -7.19 -43.27 By element: Atomic # 1 Polarization: 2.86 SS G_CDS: -5.55 Total: -2.69 kcal Atomic # 6 Polarization: 11.99 SS G_CDS: -1.17 Total: 10.82 kcal Atomic # 7 Polarization: -60.52 SS G_CDS: -0.46 Total: -60.97 kcal Atomic # 8 Polarization: -13.05 SS G_CDS: -0.14 Total: -13.19 kcal Atomic # 14 Polarization: 22.64 SS G_CDS: -5.02 Total: 17.62 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -36.08 -7.19 -43.27 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001085643577.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 156.074 kcal (2) G-P(sol) polarization free energy of solvation -36.081 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 119.993 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.191 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.272 kcal (6) G-S(sol) free energy of system = (1) + (5) 112.803 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds