Wall clock time and date at job start Tue Mar 31 2020 04:54:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.46497 * 120.00531 * 2 1 4 4 C 1.53004 * 109.47121 * 95.74532 * 3 2 1 5 5 H 1.09002 * 112.96259 * 68.62050 * 4 3 2 6 6 C 1.53941 * 113.77069 * 296.93932 * 4 3 2 7 7 C 1.53950 * 86.29038 * 222.09104 * 6 4 3 8 8 N 1.47585 * 113.76857 * 200.29498 * 4 3 2 9 9 C 1.36931 * 134.49099 * 318.93337 * 8 4 3 10 10 H 1.08001 * 120.00633 * 5.70246 * 9 8 4 11 11 C 1.38820 * 119.99706 * 185.69603 * 9 8 4 12 12 N 1.31617 * 120.00161 * 0.02562 * 11 9 8 13 13 Si 1.86797 * 119.99752 * 180.02562 * 11 9 8 14 14 H 1.48496 * 109.47385 * 90.00548 * 13 11 9 15 15 H 1.48504 * 109.46962 * 210.00348 * 13 11 9 16 16 H 1.48500 * 109.47324 * 330.00231 * 13 11 9 17 17 C 1.34782 * 119.99698 * 179.72034 * 2 1 3 18 18 O 1.21568 * 119.99840 * 184.77143 * 17 2 1 19 19 C 1.47724 * 119.99704 * 4.77579 * 17 2 1 20 20 C 1.40940 * 125.97142 * 183.29137 * 19 17 2 21 21 C 1.36167 * 107.95264 * 179.75006 * 20 19 17 22 22 N 1.35801 * 107.31169 * 0.76657 * 21 20 19 23 23 N 1.31834 * 125.97536 * 3.60246 * 19 17 2 24 24 C 1.47426 * 108.07251 * 178.98709 * 22 21 20 25 25 C 1.54643 * 102.35459 * 344.74326 * 24 22 21 26 26 O 1.36129 * 140.88573 * 180.76146 * 21 20 19 27 27 H 1.09001 * 109.47290 * 95.65638 * 1 2 3 28 28 H 1.09001 * 109.47578 * 215.65926 * 1 2 3 29 29 H 1.09006 * 109.47279 * 335.66261 * 1 2 3 30 30 H 1.08991 * 109.47450 * 215.75182 * 3 2 1 31 31 H 1.09000 * 109.46769 * 335.74990 * 3 2 1 32 32 H 1.09000 * 113.74313 * 336.43695 * 6 4 3 33 33 H 1.08999 * 113.73938 * 107.63953 * 6 4 3 34 34 H 1.08996 * 113.76813 * 137.91052 * 7 6 4 35 35 H 1.08999 * 113.76996 * 269.19626 * 7 6 4 36 36 H 0.96989 * 120.00178 * 179.97438 * 12 11 9 37 37 H 1.08008 * 126.02299 * 359.88996 * 20 19 17 38 38 H 1.08999 * 110.83005 * 102.95941 * 24 22 21 39 39 H 1.09000 * 110.82672 * 226.52711 * 24 22 21 40 40 H 1.08995 * 110.85392 * 266.64468 * 25 24 22 41 41 H 1.09003 * 111.02713 * 143.09041 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1976 1.2686 0.0000 4 6 2.5777 1.6381 1.4353 5 1 3.3267 0.9709 1.8620 6 6 1.3672 1.8811 2.3548 7 6 2.1541 3.0839 2.9062 8 7 2.8825 3.0702 1.6200 9 6 3.5648 4.0079 0.8918 10 1 3.9417 3.7602 -0.0895 11 6 3.7720 5.2769 1.4149 12 7 3.3131 5.5788 2.6109 13 14 4.7022 6.5562 0.4211 14 1 3.7454 7.3270 -0.4128 15 1 5.4109 7.4798 1.3431 16 1 5.6899 5.8789 -0.4568 17 6 2.1388 -1.1673 0.0057 18 8 3.3513 -1.1687 0.0933 19 6 1.4039 -2.4448 -0.0946 20 6 1.9718 -3.7334 -0.0353 21 6 0.9651 -4.6418 -0.1603 22 7 -0.1911 -3.9456 -0.3104 23 7 0.1030 -2.5789 -0.2609 24 6 -1.2906 -4.9144 -0.4719 25 6 -0.5329 -6.2257 -0.7846 26 8 0.7523 -5.9862 -0.1823 27 1 -0.3634 -0.1013 -1.0227 28 1 -0.3634 -0.8350 0.5991 29 1 -0.3634 0.9364 0.4235 30 1 3.1014 1.1663 -0.6004 31 1 1.5678 2.0518 -0.4221 32 1 0.4588 2.1588 1.8202 33 1 1.2049 1.0885 3.0853 34 1 1.5451 3.9749 3.0581 35 1 2.7781 2.8434 3.7669 36 1 3.4581 6.4653 2.9765 37 1 3.0203 -3.9603 0.0896 38 1 -1.8632 -5.0082 0.4508 39 1 -1.9367 -4.6323 -1.3033 40 1 -0.4363 -6.3709 -1.8605 41 1 -1.0247 -7.0814 -0.3219 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001085643577.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:54:07 Heat of formation + Delta-G solvation = 86.027989 kcal Electronic energy + Delta-G solvation = -25026.953541 eV Core-core repulsion = 21333.024161 eV Total energy + Delta-G solvation = -3693.929380 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 306.148 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -43.35641 -41.17155 -39.74236 -39.07738 -36.56031 -34.32575 -34.16036 -31.45487 -30.03889 -29.84074 -29.62277 -27.58401 -25.56946 -25.24703 -24.07422 -23.00111 -22.45384 -20.98753 -20.18871 -18.81648 -18.44424 -18.00478 -17.53166 -17.35031 -16.94711 -16.64133 -16.36462 -16.05968 -15.81533 -15.49416 -14.96468 -14.93114 -14.34714 -14.11034 -13.98719 -13.94106 -13.86503 -13.51577 -13.28729 -13.09687 -12.89601 -12.60049 -12.45863 -12.23753 -12.22303 -11.81656 -11.78852 -11.57694 -11.36320 -11.19734 -10.83501 -10.26628 -9.75433 -9.60824 -8.88822 -7.89049 -5.21856 0.14078 0.82365 0.95190 1.45716 1.48385 1.56645 1.63816 2.10554 2.21805 2.50650 3.00388 3.31295 3.34553 3.46352 3.73171 3.88144 3.89152 4.08135 4.20539 4.27692 4.30430 4.36865 4.44912 4.50753 4.54198 4.66782 4.67635 4.76298 4.81432 4.93502 4.97067 5.02688 5.05704 5.18123 5.25686 5.45970 5.57000 5.70820 5.79998 5.95090 6.24111 6.39085 6.94346 6.98255 7.62780 8.59645 9.29001 Molecular weight = 306.15amu Principal moments of inertia in cm(-1) A = 0.037257 B = 0.002815 C = 0.002754 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 751.362332 B = 9945.887965 C =10163.230516 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.081 3.919 2 N -0.587 5.587 3 C 0.136 3.864 4 C 0.128 3.872 5 H 0.028 0.972 6 C -0.125 4.125 7 C 0.158 3.842 8 N -0.627 5.627 9 C -0.230 4.230 10 H 0.082 0.918 11 C -0.067 4.067 12 N -0.955 5.955 13 Si 0.977 3.023 14 H -0.281 1.281 15 H -0.296 1.296 16 H -0.272 1.272 17 C 0.590 3.410 18 O -0.563 6.563 19 C 0.045 3.955 20 C -0.242 4.242 21 C 0.242 3.758 22 N -0.410 5.410 23 N -0.215 5.215 24 C 0.088 3.912 25 C 0.039 3.961 26 O -0.292 6.292 27 H 0.071 0.929 28 H 0.089 0.911 29 H 0.086 0.914 30 H 0.056 0.944 31 H 0.096 0.904 32 H 0.095 0.905 33 H 0.074 0.926 34 H 0.043 0.957 35 H 0.009 0.991 36 H 0.248 0.752 37 H 0.157 0.843 38 H 0.126 0.874 39 H 0.138 0.862 40 H 0.110 0.890 41 H 0.169 0.831 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.502 -26.073 -7.965 31.868 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 N -0.318 5.318 3 C 0.012 3.988 4 C 0.021 3.979 5 H 0.046 0.954 6 C -0.162 4.162 7 C 0.033 3.967 8 N -0.354 5.354 9 C -0.359 4.359 10 H 0.100 0.900 11 C -0.260 4.260 12 N -0.604 5.604 13 Si 0.805 3.195 14 H -0.207 1.207 15 H -0.222 1.222 16 H -0.197 1.197 17 C 0.376 3.624 18 O -0.440 6.440 19 C -0.119 4.119 20 C -0.272 4.272 21 C 0.072 3.928 22 N -0.208 5.208 23 N -0.047 5.047 24 C -0.030 4.030 25 C -0.036 4.036 26 O -0.198 6.198 27 H 0.089 0.911 28 H 0.107 0.893 29 H 0.105 0.895 30 H 0.075 0.925 31 H 0.114 0.886 32 H 0.113 0.887 33 H 0.093 0.907 34 H 0.062 0.938 35 H 0.027 0.973 36 H 0.057 0.943 37 H 0.175 0.825 38 H 0.144 0.856 39 H 0.156 0.844 40 H 0.128 0.872 41 H 0.186 0.814 Dipole moment (debyes) X Y Z Total from point charges -16.868 -25.351 -8.080 31.504 hybrid contribution 1.749 0.621 0.028 1.856 sum -15.119 -24.730 -8.053 30.083 Atomic orbital electron populations 1.22226 0.76309 1.04200 1.03360 1.47703 1.08835 1.04487 1.70746 1.21464 0.96618 0.83851 0.96871 1.22591 0.94664 0.85717 0.94919 0.95441 1.23536 0.96919 0.97420 0.98370 1.22100 0.91352 0.95572 0.87666 1.46509 1.62951 1.04432 1.21524 1.19408 1.27524 0.91113 0.97824 0.89993 1.25634 1.02597 0.99918 0.97868 1.70012 1.51761 1.20610 1.18010 0.85103 0.78321 0.78714 0.77358 1.20725 1.22231 1.19743 1.17238 0.85884 0.82392 0.76864 1.90804 1.14674 1.86934 1.51583 1.21559 0.91452 0.93914 1.05012 1.20088 0.99547 0.87925 1.19661 1.20639 0.89827 0.83038 0.99277 1.51317 1.08839 1.04114 1.56573 1.77832 1.13073 0.89838 1.23927 1.23822 0.88362 0.83360 1.07498 1.24953 0.78322 0.98359 1.01975 1.87162 1.40105 1.14731 1.77846 0.91088 0.89287 0.89506 0.92548 0.88591 0.88665 0.90723 0.93845 0.97276 0.94285 0.82525 0.85562 0.84388 0.87220 0.81356 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.89 9.01 127.77 1.15 3.04 16 2 N -0.59 -18.64 2.75 -850.33 -2.34 -20.98 16 3 C 0.14 5.14 5.21 86.38 0.45 5.59 16 4 C 0.13 5.63 4.54 45.09 0.20 5.84 16 5 H 0.03 1.36 8.14 -2.39 -0.02 1.34 16 6 C -0.12 -4.75 7.28 31.25 0.23 -4.52 16 7 C 0.16 7.91 7.39 86.44 0.64 8.54 16 8 N -0.63 -33.62 3.58 -690.84 -2.47 -36.10 16 9 C -0.23 -13.36 10.51 84.04 0.88 -12.48 16 10 H 0.08 4.57 7.83 -2.91 -0.02 4.55 16 11 C -0.07 -3.96 5.50 84.86 0.47 -3.50 16 12 N -0.95 -59.39 11.56 21.65 0.25 -59.14 16 13 Si 0.98 47.23 29.55 68.60 2.03 49.26 16 14 H -0.28 -13.09 7.11 99.48 0.71 -12.38 16 15 H -0.30 -14.41 7.11 99.48 0.71 -13.70 16 16 H -0.27 -12.65 7.11 99.48 0.71 -11.94 16 17 C 0.59 20.66 7.62 86.75 0.66 21.32 16 18 O -0.56 -24.08 16.63 -3.93 -0.07 -24.15 16 19 C 0.05 1.33 6.76 42.31 0.29 1.62 16 20 C -0.24 -6.60 10.60 22.45 0.24 -6.36 16 21 C 0.24 5.12 8.32 83.60 0.70 5.81 16 22 N -0.41 -7.46 5.01 -453.35 -2.27 -9.73 16 23 N -0.22 -5.20 9.35 -48.51 -0.45 -5.65 16 24 C 0.09 0.44 8.10 86.76 0.70 1.14 16 25 C 0.04 0.11 8.08 72.54 0.59 0.69 16 26 O -0.29 -4.39 11.19 -95.02 -1.06 -5.46 16 27 H 0.07 1.47 8.14 -2.39 -0.02 1.45 16 28 H 0.09 2.01 5.81 -2.39 -0.01 2.00 16 29 H 0.09 1.87 6.57 -2.38 -0.02 1.86 16 30 H 0.06 2.35 7.68 -2.39 -0.02 2.33 16 31 H 0.10 3.47 8.03 -2.39 -0.02 3.45 16 32 H 0.09 3.21 6.78 -2.39 -0.02 3.20 16 33 H 0.07 2.49 8.14 -2.39 -0.02 2.47 16 34 H 0.04 2.34 7.45 -2.39 -0.02 2.32 16 35 H 0.01 0.49 8.14 -2.39 -0.02 0.47 16 36 H 0.25 14.96 8.31 -92.72 -0.77 14.19 16 37 H 0.16 4.31 8.06 -2.91 -0.02 4.28 16 38 H 0.13 0.17 8.14 -2.39 -0.02 0.15 16 39 H 0.14 0.03 8.14 -2.39 -0.02 0.01 16 40 H 0.11 0.00 8.14 -2.39 -0.02 -0.02 16 41 H 0.17 -0.82 8.14 -2.39 -0.02 -0.84 16 Total: -1.00 -81.86 341.52 1.85 -80.01 By element: Atomic # 1 Polarization: 4.15 SS G_CDS: 1.05 Total: 5.19 kcal Atomic # 6 Polarization: 19.55 SS G_CDS: 7.19 Total: 26.74 kcal Atomic # 7 Polarization: -124.31 SS G_CDS: -7.28 Total: -131.60 kcal Atomic # 8 Polarization: -28.48 SS G_CDS: -1.13 Total: -29.61 kcal Atomic # 14 Polarization: 47.23 SS G_CDS: 2.03 Total: 49.26 kcal Total: -81.86 1.85 -80.01 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001085643577.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 166.038 kcal (2) G-P(sol) polarization free energy of solvation -81.864 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 84.174 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.854 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.010 kcal (6) G-S(sol) free energy of system = (1) + (5) 86.028 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds