Wall clock time and date at job start Tue Mar 31 2020 04:54:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.46507 * 119.99725 * 2 1 4 4 C 1.52998 * 109.46849 * 276.35956 * 3 2 1 5 5 H 1.08995 * 113.04471 * 49.66661 * 4 3 2 6 6 C 1.53952 * 113.76602 * 181.41457 * 4 3 2 7 7 C 1.53951 * 86.28906 * 137.90928 * 6 4 3 8 8 N 1.47587 * 86.23996 * 336.33732 * 7 6 4 9 9 C 1.36933 * 134.49053 * 204.69410 * 8 7 6 10 10 H 1.07995 * 120.00318 * 55.50876 * 9 8 7 11 11 C 1.38811 * 119.99772 * 235.50462 * 9 8 7 12 12 N 1.31626 * 119.99970 * 187.56517 * 11 9 8 13 13 Si 1.86798 * 120.00214 * 7.56235 * 11 9 8 14 14 H 1.48498 * 109.47011 * 84.62332 * 13 11 9 15 15 H 1.48504 * 109.47036 * 204.62125 * 13 11 9 16 16 H 1.48503 * 109.47203 * 324.62124 * 13 11 9 17 17 C 1.34775 * 120.00387 * 179.97438 * 2 1 3 18 18 O 1.21571 * 120.00093 * 185.60284 * 17 2 1 19 19 C 1.47715 * 119.99698 * 5.60724 * 17 2 1 20 20 C 1.40952 * 125.97287 * 185.61465 * 19 17 2 21 21 C 1.36173 * 107.94945 * 179.76569 * 20 19 17 22 22 N 1.35801 * 107.31490 * 0.54162 * 21 20 19 23 23 N 1.31841 * 125.97792 * 5.30339 * 19 17 2 24 24 C 1.47426 * 108.07084 * 179.17769 * 22 21 20 25 25 C 1.54640 * 102.34919 * 344.68499 * 24 22 21 26 26 O 1.36123 * 140.87515 * 180.68938 * 21 20 19 27 27 H 1.08998 * 109.46790 * 95.72091 * 1 2 3 28 28 H 1.09000 * 109.46558 * 215.71507 * 1 2 3 29 29 H 1.09002 * 109.47488 * 335.71494 * 1 2 3 30 30 H 1.09002 * 109.46993 * 156.36278 * 3 2 1 31 31 H 1.09000 * 109.47021 * 36.36010 * 3 2 1 32 32 H 1.08999 * 113.74251 * 23.56544 * 6 4 3 33 33 H 1.08994 * 113.83680 * 252.26545 * 6 4 3 34 34 H 1.08997 * 113.76993 * 90.69333 * 7 6 4 35 35 H 1.08996 * 113.77338 * 221.98151 * 7 6 4 36 36 H 0.96995 * 120.00213 * 180.02562 * 12 11 9 37 37 H 1.08000 * 126.02337 * 359.80346 * 20 19 17 38 38 H 1.09000 * 110.83063 * 226.47060 * 24 22 21 39 39 H 1.08999 * 111.00107 * 102.97469 * 24 22 21 40 40 H 1.09005 * 110.85536 * 266.66752 * 25 24 22 41 41 H 1.08995 * 110.85674 * 143.03321 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.3140 1.7903 -1.4336 5 1 1.3617 1.7976 -1.9638 6 6 3.1002 3.1086 -1.5523 7 6 3.7612 2.4862 -2.7956 8 7 3.4198 1.1785 -2.2026 9 6 3.9254 -0.0888 -2.3180 10 1 4.9711 -0.2731 -2.1210 11 6 3.0937 -1.1367 -2.6882 12 7 3.5401 -2.3745 -2.6554 13 14 1.3408 -0.7903 -3.2330 14 1 1.3299 -0.4485 -4.6780 15 1 0.5037 -1.9952 -3.0030 16 1 0.7952 0.3481 -2.4509 17 6 2.1390 -1.1671 0.0005 18 8 3.3503 -1.1696 0.1033 19 6 1.4057 -2.4434 -0.1239 20 6 1.9661 -3.7331 -0.0269 21 6 0.9636 -4.6397 -0.1923 22 7 -0.1828 -3.9416 -0.3984 23 7 0.1117 -2.5754 -0.3394 24 6 -1.2772 -4.9087 -0.5996 25 6 -0.5106 -6.2242 -0.8697 26 8 0.7483 -5.9837 -0.2145 27 1 -0.3633 -0.1024 -1.0225 28 1 -0.3632 -0.8344 0.5999 29 1 -0.3634 0.9367 0.4227 30 1 3.1945 1.1128 0.4120 31 1 1.6624 1.9972 0.6093 32 1 3.7921 3.2827 -0.7282 33 1 2.4769 3.9748 -1.7739 34 1 3.2339 2.6978 -3.7258 35 1 4.8331 2.6718 -2.8627 36 1 2.9591 -3.1067 -2.9144 37 1 3.0069 -3.9618 0.1485 38 1 -1.8862 -4.6313 -1.4600 39 1 -1.8918 -4.9952 0.2964 40 1 -0.3680 -6.3777 -1.9395 41 1 -1.0260 -7.0730 -0.4203 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001085643578.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:54:10 Heat of formation + Delta-G solvation = 136.387800 kcal Electronic energy + Delta-G solvation = -27209.124079 eV Core-core repulsion = 23517.378464 eV Total energy + Delta-G solvation = -3691.745615 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 306.148 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.94914 -39.36493 -38.17489 -37.21482 -34.60654 -33.05268 -32.06488 -29.99792 -28.47727 -28.44587 -27.84303 -25.95836 -24.20351 -22.86696 -22.72483 -21.41569 -20.98057 -19.25941 -18.54018 -17.37528 -16.67675 -16.43185 -16.12130 -15.68622 -15.19855 -14.99836 -14.92621 -14.48222 -14.06533 -13.63537 -13.40474 -13.20162 -12.98895 -12.66788 -12.45631 -12.32431 -12.23776 -12.05001 -11.83692 -11.64710 -11.25390 -11.15115 -10.79322 -10.55478 -10.27494 -10.06202 -9.95050 -9.56228 -9.34737 -9.03302 -8.73857 -8.20630 -8.06474 -7.71095 -6.26569 -5.73970 -3.37246 1.82074 2.15947 2.65727 3.04317 3.46241 3.55984 3.57664 3.76067 3.99402 4.29807 4.49875 4.68061 4.69237 4.89029 4.97613 5.13453 5.19764 5.43798 5.53587 5.57398 5.63871 5.68644 5.85819 5.97018 6.03463 6.06275 6.18392 6.26485 6.33582 6.41057 6.45550 6.57603 6.70231 6.80345 6.89030 7.18728 7.22565 7.40282 7.86404 8.07513 8.22126 8.52072 9.04226 9.17085 9.86817 10.71064 11.38598 Molecular weight = 306.15amu Principal moments of inertia in cm(-1) A = 0.022757 B = 0.005954 C = 0.005650 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1230.116519 B = 4701.738187 C = 4954.436677 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.082 3.918 2 N -0.609 5.609 3 C 0.128 3.872 4 C 0.102 3.898 5 H 0.057 0.943 6 C -0.146 4.146 7 C 0.102 3.898 8 N -0.605 5.605 9 C -0.225 4.225 10 H 0.073 0.927 11 C 0.058 3.942 12 N -0.877 5.877 13 Si 0.849 3.151 14 H -0.301 1.301 15 H -0.295 1.295 16 H -0.239 1.239 17 C 0.594 3.406 18 O -0.453 6.453 19 C 0.083 3.917 20 C -0.185 4.185 21 C 0.217 3.783 22 N -0.425 5.425 23 N -0.231 5.231 24 C 0.101 3.899 25 C 0.042 3.958 26 O -0.282 6.282 27 H 0.051 0.949 28 H 0.076 0.924 29 H 0.062 0.938 30 H 0.093 0.907 31 H 0.063 0.937 32 H 0.077 0.923 33 H 0.051 0.949 34 H 0.029 0.971 35 H 0.046 0.954 36 H 0.256 0.744 37 H 0.163 0.837 38 H 0.104 0.896 39 H 0.099 0.901 40 H 0.090 0.910 41 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.419 -2.055 6.251 14.055 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 N -0.344 5.344 3 C 0.005 3.995 4 C -0.004 4.004 5 H 0.074 0.926 6 C -0.185 4.185 7 C -0.022 4.022 8 N -0.334 5.334 9 C -0.353 4.353 10 H 0.091 0.909 11 C -0.145 4.145 12 N -0.516 5.516 13 Si 0.679 3.321 14 H -0.230 1.230 15 H -0.222 1.222 16 H -0.164 1.164 17 C 0.377 3.623 18 O -0.318 6.318 19 C -0.084 4.084 20 C -0.214 4.214 21 C 0.050 3.950 22 N -0.222 5.222 23 N -0.061 5.061 24 C -0.020 4.020 25 C -0.035 4.035 26 O -0.189 6.189 27 H 0.069 0.931 28 H 0.094 0.906 29 H 0.081 0.919 30 H 0.111 0.889 31 H 0.081 0.919 32 H 0.095 0.905 33 H 0.070 0.930 34 H 0.047 0.953 35 H 0.065 0.935 36 H 0.066 0.934 37 H 0.181 0.819 38 H 0.123 0.877 39 H 0.117 0.883 40 H 0.108 0.892 41 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -12.730 -2.074 6.161 14.294 hybrid contribution -0.894 -0.627 -0.853 1.386 sum -13.624 -2.702 5.308 14.869 Atomic orbital electron populations 1.21940 0.80394 1.01728 1.02167 1.47388 1.06226 1.05824 1.75009 1.21692 0.97752 0.82935 0.97116 1.23329 0.94119 0.90649 0.92335 0.92611 1.23556 0.99487 0.95807 0.99676 1.22742 0.97864 0.87971 0.93654 1.46175 1.35639 1.04272 1.47266 1.18231 0.95663 0.79967 1.41485 0.90921 1.25859 0.97323 0.95640 0.95720 1.69795 1.35639 0.98171 1.47965 0.87518 0.87187 0.78615 0.78740 1.22954 1.22203 1.16439 1.16481 0.86285 0.80823 0.78715 1.90870 1.11638 1.85104 1.44236 1.22157 0.90194 0.95489 1.00523 1.20042 0.98598 0.87397 1.15389 1.20716 0.90419 0.81508 1.02315 1.50697 1.07632 1.04798 1.59084 1.77867 1.15140 0.87927 1.25185 1.23057 0.89480 0.85190 1.04319 1.24362 0.81930 0.97346 0.99838 1.87086 1.39361 1.17160 1.75342 0.93063 0.90601 0.91918 0.88888 0.91912 0.90455 0.93018 0.95317 0.93548 0.93382 0.81903 0.87743 0.88300 0.89186 0.85705 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.43 8.73 59.85 0.52 1.96 16 2 N -0.61 -12.76 1.75 -182.74 -0.32 -13.08 16 3 C 0.13 2.51 5.42 -4.04 -0.02 2.49 16 4 C 0.10 2.14 2.97 -66.67 -0.20 1.94 16 5 H 0.06 1.23 5.90 -51.93 -0.31 0.92 16 6 C -0.15 -2.57 7.86 -25.79 -0.20 -2.77 16 7 C 0.10 2.13 8.92 -2.97 -0.03 2.11 16 8 N -0.60 -15.20 2.64 -169.62 -0.45 -15.64 16 9 C -0.22 -6.64 8.76 -15.06 -0.13 -6.77 16 10 H 0.07 2.42 8.06 -52.49 -0.42 1.99 16 11 C 0.06 1.72 3.10 -17.43 -0.05 1.66 16 12 N -0.88 -27.04 13.90 55.49 0.77 -26.27 16 13 Si 0.85 22.83 22.87 -169.99 -3.89 18.94 16 14 H -0.30 -8.53 7.11 56.52 0.40 -8.13 16 15 H -0.30 -8.10 7.11 56.52 0.40 -7.70 16 16 H -0.24 -5.88 2.54 56.52 0.14 -5.74 16 17 C 0.59 14.26 4.26 -12.39 -0.05 14.21 16 18 O -0.45 -12.39 13.68 5.30 0.07 -12.32 16 19 C 0.08 1.89 5.54 -82.96 -0.46 1.43 16 20 C -0.18 -4.06 10.60 -39.30 -0.42 -4.47 16 21 C 0.22 4.08 8.32 -16.54 -0.14 3.94 16 22 N -0.43 -7.52 5.01 -59.64 -0.30 -7.82 16 23 N -0.23 -4.76 9.29 33.32 0.31 -4.45 16 24 C 0.10 1.10 8.10 -2.67 -0.02 1.08 16 25 C 0.04 0.40 8.08 38.02 0.31 0.71 16 26 O -0.28 -4.32 11.19 -20.13 -0.23 -4.55 16 27 H 0.05 0.99 5.69 -51.93 -0.30 0.69 16 28 H 0.08 1.31 5.96 -51.93 -0.31 1.00 16 29 H 0.06 0.88 7.90 -51.93 -0.41 0.47 16 30 H 0.09 2.02 7.18 -51.93 -0.37 1.65 16 31 H 0.06 0.97 7.96 -51.93 -0.41 0.56 16 32 H 0.08 1.28 8.10 -51.93 -0.42 0.86 16 33 H 0.05 0.77 8.14 -51.93 -0.42 0.34 16 34 H 0.03 0.60 8.14 -51.93 -0.42 0.17 16 35 H 0.05 0.94 8.14 -51.93 -0.42 0.52 16 36 H 0.26 7.74 8.31 -40.82 -0.34 7.40 16 37 H 0.16 3.67 8.06 -52.49 -0.42 3.24 16 38 H 0.10 0.97 8.14 -51.93 -0.42 0.55 16 39 H 0.10 0.80 8.14 -51.93 -0.42 0.38 16 40 H 0.09 0.81 8.14 -51.93 -0.42 0.39 16 41 H 0.13 0.67 8.14 -51.93 -0.42 0.25 16 LS Contribution 317.84 15.07 4.79 4.79 Total: -1.00 -37.21 317.84 -5.86 -43.07 By element: Atomic # 1 Polarization: 5.56 SS G_CDS: -5.73 Total: -0.17 kcal Atomic # 6 Polarization: 18.40 SS G_CDS: -0.89 Total: 17.50 kcal Atomic # 7 Polarization: -67.28 SS G_CDS: 0.01 Total: -67.26 kcal Atomic # 8 Polarization: -16.71 SS G_CDS: -0.15 Total: -16.87 kcal Atomic # 14 Polarization: 22.83 SS G_CDS: -3.89 Total: 18.94 kcal Total LS contribution 4.79 Total: 4.79 kcal Total: -37.21 -5.86 -43.07 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001085643578.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 179.457 kcal (2) G-P(sol) polarization free energy of solvation -37.213 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 142.244 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.857 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.069 kcal (6) G-S(sol) free energy of system = (1) + (5) 136.388 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds