Wall clock time and date at job start Tue Mar 31 2020 04:45:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.36339 * 126.19763 * 2 1 4 4 C 1.36250 * 106.88999 * 179.97438 * 3 2 1 5 5 C 1.47242 * 126.16540 * 179.97438 * 4 3 2 6 6 O 1.21643 * 120.00281 * 0.02562 * 5 4 3 7 7 N 1.34780 * 120.00438 * 179.97438 * 5 4 3 8 8 C 1.46491 * 120.00636 * 180.02562 * 7 5 4 9 9 H 1.09008 * 110.68666 * 37.05447 * 8 7 5 10 10 C 1.55479 * 110.61255 * 160.19924 * 8 7 5 11 11 C 1.55838 * 103.33012 * 118.41492 * 10 8 7 12 12 H 1.09002 * 116.12804 * 159.23384 * 11 10 8 13 13 C 1.55390 * 105.04467 * 288.04371 * 11 10 8 14 14 C 1.54842 * 103.48609 * 72.07221 * 13 11 10 15 15 C 1.55842 * 103.44801 * 359.87731 * 14 13 11 16 16 H 1.09005 * 115.56038 * 158.81248 * 15 14 13 17 17 N 1.50236 * 101.05223 * 33.02538 * 11 10 8 18 18 C 1.36935 * 130.84320 * 126.06437 * 17 11 10 19 19 H 1.08000 * 120.00233 * 179.66489 * 18 17 11 20 20 C 1.38813 * 119.99509 * 359.66721 * 18 17 11 21 21 N 1.31614 * 120.00143 * 359.72424 * 20 18 17 22 22 Si 1.86808 * 119.99712 * 179.97438 * 20 18 17 23 23 H 1.48491 * 109.47132 * 59.99845 * 22 20 18 24 24 H 1.48500 * 109.46713 * 180.02562 * 22 20 18 25 25 H 1.48497 * 109.46940 * 299.99744 * 22 20 18 26 26 N 1.36031 * 107.66527 * 0.24030 * 4 3 2 27 27 C 1.30697 * 108.94896 * 359.59612 * 26 4 3 28 28 O 1.35451 * 125.55580 * 180.15178 * 27 26 4 29 29 H 1.09003 * 109.47249 * 90.00286 * 1 2 3 30 30 H 1.09006 * 109.46879 * 209.99775 * 1 2 3 31 31 H 1.08993 * 109.47655 * 329.99756 * 1 2 3 32 32 H 1.08006 * 126.55453 * 359.97438 * 3 2 1 33 33 H 0.97003 * 119.99438 * 0.02562 * 7 5 4 34 34 H 1.09000 * 110.60538 * 359.97438 * 10 8 7 35 35 H 1.09002 * 110.89577 * 236.96795 * 10 8 7 36 36 H 1.08998 * 110.71334 * 313.51732 * 13 11 10 37 37 H 1.09002 * 110.49682 * 190.52709 * 13 11 10 38 38 H 1.08994 * 110.63136 * 241.38414 * 14 13 11 39 39 H 1.09006 * 110.75976 * 118.42865 * 14 13 11 40 40 H 0.97001 * 120.00070 * 179.97438 * 21 20 18 41 41 H 0.96698 * 114.00296 * 270.29432 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2702 1.1002 0.0000 4 6 3.5560 0.6497 0.0006 5 6 4.7691 1.4843 0.0003 6 8 4.6732 2.6969 -0.0001 7 7 5.9859 0.9047 0.0014 8 6 7.1928 1.7350 0.0017 9 1 7.0484 2.6242 0.6155 10 6 8.4195 0.9175 0.4960 11 6 9.3809 0.9351 -0.7303 12 1 10.4314 0.7350 -0.5196 13 6 8.7193 -0.0059 -1.7751 14 6 7.4982 0.8069 -2.2710 15 6 7.5875 2.1305 -1.4532 16 1 7.0584 2.9831 -1.8791 17 7 9.0757 2.2845 -1.3161 18 6 9.9005 3.3306 -1.6331 19 1 9.4883 4.2338 -2.0581 20 6 11.2666 3.2299 -1.4083 21 7 11.7683 2.1312 -0.8855 22 14 12.3921 4.6566 -1.8414 23 1 11.9886 5.8579 -1.0674 24 1 13.7944 4.2998 -1.5075 25 1 12.2879 4.9458 -3.2942 26 7 3.5171 -0.7100 -0.0045 27 6 2.2693 -1.0988 0.0006 28 8 1.8451 -2.3852 0.0007 29 1 -0.3634 -0.0001 -1.0277 30 1 -0.3633 -0.8901 0.5138 31 1 -0.3634 0.8899 0.5138 32 1 1.9499 2.1317 -0.0004 33 1 6.0625 -0.0623 0.0021 34 1 8.1267 -0.1037 0.7402 35 1 8.8857 1.3977 1.3563 36 1 8.3971 -0.9359 -1.3068 37 1 9.4065 -0.2066 -2.5971 38 1 6.5703 0.2800 -2.0487 39 1 7.5769 1.0095 -3.3391 40 1 12.7230 2.0607 -0.7287 41 1 1.7223 -2.7590 -0.8826 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001095968310.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:45:19 Heat of formation + Delta-G solvation = 46.010373 kcal Electronic energy + Delta-G solvation = -25413.158959 eV Core-core repulsion = 21717.494284 eV Total energy + Delta-G solvation = -3695.664674 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 306.148 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -42.37319 -39.73834 -38.15642 -37.47079 -34.48812 -33.69925 -32.21270 -29.48985 -29.11925 -28.92072 -27.97197 -26.97616 -24.26378 -23.18586 -21.71250 -21.15242 -20.24860 -19.38371 -18.83632 -18.34683 -17.61941 -16.88289 -16.45165 -15.85460 -15.34296 -14.92853 -14.77033 -14.66011 -14.48645 -14.06075 -13.75203 -13.55287 -13.24165 -12.87683 -12.25125 -12.21233 -12.11979 -11.64455 -11.38764 -10.96572 -10.83448 -10.79066 -10.73193 -10.50293 -10.11248 -10.06584 -10.03680 -9.81735 -9.64920 -9.26537 -9.15564 -8.84835 -8.75177 -8.32640 -6.82889 -5.65068 -3.02759 1.37502 1.93329 2.17394 3.29299 3.45594 3.49256 3.50529 3.68662 3.78979 4.27734 4.42109 4.52938 4.61455 4.90681 5.00798 5.26423 5.34101 5.47075 5.60257 5.66842 5.90487 5.95107 6.05195 6.10361 6.19565 6.24184 6.26217 6.44113 6.47473 6.65899 6.74895 6.82234 6.91714 7.08016 7.11508 7.21192 7.37385 7.45698 7.60236 7.85577 8.04702 8.25582 8.63401 9.18127 9.80609 10.62221 11.44501 Molecular weight = 306.15amu Principal moments of inertia in cm(-1) A = 0.033513 B = 0.003190 C = 0.003041 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 835.307768 B = 8774.211462 C = 9206.510514 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.069 3.931 2 N -0.466 5.466 3 C 0.038 3.962 4 C -0.038 4.038 5 C 0.596 3.404 6 O -0.546 6.546 7 N -0.694 5.694 8 C 0.128 3.872 9 H 0.083 0.917 10 C -0.140 4.140 11 C 0.154 3.846 12 H 0.154 0.846 13 C -0.137 4.137 14 C -0.131 4.131 15 C 0.129 3.871 16 H 0.086 0.914 17 N -0.590 5.590 18 C -0.208 4.208 19 H 0.078 0.922 20 C -0.013 4.013 21 N -0.924 5.924 22 Si 0.916 3.084 23 H -0.286 1.286 24 H -0.291 1.291 25 H -0.287 1.287 26 N -0.452 5.452 27 C 0.374 3.626 28 O -0.440 6.440 29 H 0.080 0.920 30 H 0.091 0.909 31 H 0.091 0.909 32 H 0.195 0.805 33 H 0.404 0.596 34 H 0.055 0.945 35 H 0.066 0.934 36 H 0.046 0.954 37 H 0.053 0.947 38 H 0.053 0.947 39 H 0.049 0.951 40 H 0.254 0.746 41 H 0.401 0.599 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.741 -8.618 1.132 24.346 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 N -0.161 5.161 3 C -0.099 4.099 4 C -0.167 4.167 5 C 0.381 3.619 6 O -0.424 6.424 7 N -0.344 5.344 8 C 0.022 3.978 9 H 0.101 0.899 10 C -0.179 4.179 11 C 0.047 3.953 12 H 0.171 0.829 13 C -0.176 4.176 14 C -0.171 4.171 15 C 0.020 3.980 16 H 0.104 0.896 17 N -0.311 5.311 18 C -0.336 4.336 19 H 0.096 0.904 20 C -0.208 4.208 21 N -0.573 5.573 22 Si 0.747 3.253 23 H -0.212 1.212 24 H -0.216 1.216 25 H -0.213 1.213 26 N -0.183 5.183 27 C 0.073 3.927 28 O -0.241 6.241 29 H 0.099 0.901 30 H 0.110 0.890 31 H 0.110 0.890 32 H 0.212 0.788 33 H 0.239 0.761 34 H 0.074 0.926 35 H 0.084 0.916 36 H 0.065 0.935 37 H 0.072 0.928 38 H 0.072 0.928 39 H 0.068 0.932 40 H 0.064 0.936 41 H 0.258 0.742 Dipole moment (debyes) X Y Z Total from point charges -21.909 -8.175 1.717 23.447 hybrid contribution -0.448 0.462 -0.766 1.001 sum -22.357 -7.713 0.951 23.669 Atomic orbital electron populations 1.22126 0.75916 1.05350 1.03965 1.45812 1.08281 1.06610 1.55395 1.22669 0.89778 0.92398 1.05033 1.20633 0.93873 0.89330 1.12871 1.16809 0.81986 0.86331 0.76766 1.90806 1.86728 1.13147 1.51689 1.46043 1.05155 1.10702 1.72451 1.22763 0.82180 0.93440 0.99442 0.89882 1.23382 0.96028 0.97604 1.00931 1.23663 0.99850 0.83569 0.88210 0.82903 1.22977 0.97001 0.97247 1.00418 1.22922 0.97283 0.97745 0.99162 1.23194 0.86847 0.95112 0.92852 0.89642 1.46479 0.99645 1.13323 1.71652 1.19023 0.87821 0.92793 1.33997 0.90377 1.24688 0.96448 0.97774 1.01909 1.69433 1.11787 1.26093 1.49952 0.86112 0.79761 0.81398 0.78009 1.21243 1.21641 1.21337 1.70884 1.16703 1.11246 1.19438 1.20285 0.84169 0.81425 1.06840 1.84890 1.86761 1.18234 1.34176 0.90134 0.88981 0.89019 0.78765 0.76090 0.92633 0.91565 0.93518 0.92781 0.92848 0.93241 0.93577 0.74195 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.26 11.11 59.85 0.66 0.93 16 2 N -0.47 -4.07 3.16 -125.77 -0.40 -4.46 16 3 C 0.04 0.42 11.29 -16.26 -0.18 0.23 16 4 C -0.04 -0.54 6.97 -83.06 -0.58 -1.12 16 5 C 0.60 10.31 7.80 -12.60 -0.10 10.21 16 6 O -0.55 -10.90 16.61 5.24 0.09 -10.81 16 7 N -0.69 -11.91 3.63 -52.20 -0.19 -12.10 16 8 C 0.13 2.55 3.10 -65.10 -0.20 2.35 16 9 H 0.08 1.82 7.71 -51.92 -0.40 1.42 16 10 C -0.14 -2.82 6.23 -23.90 -0.15 -2.97 16 11 C 0.15 3.60 4.69 -63.06 -0.30 3.30 16 12 H 0.15 4.05 5.52 -51.93 -0.29 3.76 16 13 C -0.14 -2.80 6.42 -24.49 -0.16 -2.96 16 14 C -0.13 -2.60 6.32 -24.24 -0.15 -2.76 16 15 C 0.13 2.84 5.35 -62.80 -0.34 2.50 16 16 H 0.09 1.93 8.14 -51.93 -0.42 1.51 16 17 N -0.59 -15.17 2.99 -146.09 -0.44 -15.61 16 18 C -0.21 -5.87 10.59 -15.06 -0.16 -6.03 16 19 H 0.08 2.15 7.83 -52.49 -0.41 1.74 16 20 C -0.01 -0.37 5.50 -17.43 -0.10 -0.46 16 21 N -0.92 -26.69 10.46 55.49 0.58 -26.11 16 22 Si 0.92 22.38 29.55 -169.99 -5.02 17.35 16 23 H -0.29 -6.93 7.11 56.52 0.40 -6.52 16 24 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 25 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 26 N -0.45 -6.28 11.03 -11.22 -0.12 -6.40 16 27 C 0.37 4.04 9.03 -89.17 -0.81 3.23 16 28 O -0.44 -3.51 13.55 -18.04 -0.24 -3.75 16 29 H 0.08 0.18 8.14 -51.93 -0.42 -0.24 16 30 H 0.09 0.27 8.14 -51.93 -0.42 -0.15 16 31 H 0.09 0.22 8.14 -51.93 -0.42 -0.20 16 32 H 0.20 1.71 8.06 -52.48 -0.42 1.28 16 33 H 0.40 6.43 7.73 -40.82 -0.32 6.12 16 34 H 0.06 0.98 7.34 -51.93 -0.38 0.59 16 35 H 0.07 1.40 8.14 -51.93 -0.42 0.98 16 36 H 0.05 0.83 7.80 -51.93 -0.41 0.42 16 37 H 0.05 1.16 8.14 -51.93 -0.42 0.74 16 38 H 0.05 0.96 6.48 -51.93 -0.34 0.62 16 39 H 0.05 0.99 8.14 -51.93 -0.42 0.57 16 40 H 0.25 7.14 8.31 -40.82 -0.34 6.80 16 41 H 0.40 1.14 9.06 45.56 0.41 1.55 16 LS Contribution 339.53 15.07 5.12 5.12 Total: -1.00 -34.74 339.53 -7.82 -42.56 By element: Atomic # 1 Polarization: 12.39 SS G_CDS: -4.64 Total: 7.75 kcal Atomic # 6 Polarization: 9.01 SS G_CDS: -2.55 Total: 6.46 kcal Atomic # 7 Polarization: -64.12 SS G_CDS: -0.57 Total: -64.68 kcal Atomic # 8 Polarization: -14.40 SS G_CDS: -0.16 Total: -14.56 kcal Atomic # 14 Polarization: 22.38 SS G_CDS: -5.02 Total: 17.35 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -34.74 -7.82 -42.56 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001095968310.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.574 kcal (2) G-P(sol) polarization free energy of solvation -34.742 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.831 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.821 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.563 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.010 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds