Wall clock time and date at job start Tue Mar 31 2020 04:50:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 N 1.30449 * 125.99117 * 2 1 4 4 N 1.39937 * 108.89862 * 180.02562 * 3 2 1 5 5 C 1.46505 * 125.75149 * 180.02562 * 4 3 2 6 6 C 1.34256 * 108.48976 * 359.74579 * 4 3 2 7 7 C 1.38045 * 107.42093 * 0.40011 * 6 4 3 8 8 C 1.47422 * 126.41601 * 179.86710 * 7 6 4 9 9 O 1.21609 * 119.99867 * 179.68455 * 8 7 6 10 10 N 1.34773 * 120.00383 * 359.68873 * 8 7 6 11 11 C 1.46501 * 120.00306 * 179.97438 * 10 8 7 12 12 C 1.52999 * 109.47002 * 179.97438 * 11 10 8 13 13 H 1.09000 * 109.70157 * 60.13528 * 12 11 10 14 14 C 1.53629 * 109.66387 * 180.72529 * 12 11 10 15 15 C 1.53037 * 109.24020 * 174.55108 * 14 12 11 16 16 C 1.53043 * 109.53906 * 298.50939 * 15 14 12 17 17 C 1.53188 * 109.31284 * 61.36916 * 16 15 14 18 18 N 1.46924 * 109.59008 * 299.77778 * 12 11 10 19 19 C 1.36936 * 120.62795 * 6.62827 * 18 12 11 20 20 H 1.08003 * 120.00202 * 327.80603 * 19 18 12 21 21 C 1.38816 * 119.99977 * 148.08423 * 19 18 12 22 22 N 1.31618 * 120.00060 * 347.83758 * 21 19 18 23 23 Si 1.86807 * 119.99996 * 167.84344 * 21 19 18 24 24 H 1.48497 * 109.47115 * 59.99728 * 23 21 19 25 25 H 1.48499 * 109.47026 * 179.97438 * 23 21 19 26 26 H 1.48498 * 109.46696 * 299.99807 * 23 21 19 27 27 H 1.08991 * 109.47601 * 269.96198 * 1 2 3 28 28 H 1.09006 * 109.46979 * 29.96392 * 1 2 3 29 29 H 1.08995 * 109.46966 * 149.95745 * 1 2 3 30 30 H 1.08996 * 109.47148 * 89.97247 * 5 4 3 31 31 H 1.09004 * 109.46741 * 209.97266 * 5 4 3 32 32 H 1.08995 * 109.47015 * 329.96870 * 5 4 3 33 33 H 1.08000 * 126.29254 * 180.23920 * 6 4 3 34 34 H 0.97006 * 119.99924 * 359.97438 * 10 8 7 35 35 H 1.09002 * 109.46604 * 60.00140 * 11 10 8 36 36 H 1.09001 * 109.46934 * 299.99782 * 11 10 8 37 37 H 1.09002 * 109.63067 * 54.55808 * 14 12 11 38 38 H 1.09001 * 109.45311 * 294.43521 * 14 12 11 39 39 H 1.08998 * 109.45666 * 178.49160 * 15 14 12 40 40 H 1.09003 * 109.45074 * 58.52687 * 15 14 12 41 41 H 1.08996 * 109.49540 * 301.41590 * 16 15 14 42 42 H 1.09000 * 109.52187 * 181.33441 * 16 15 14 43 43 H 1.08994 * 109.59083 * 185.58180 * 17 16 15 44 44 H 1.08998 * 109.70447 * 65.21992 * 17 16 15 45 45 H 0.96996 * 120.00415 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2736 1.0555 0.0000 4 7 3.6111 0.6442 -0.0006 5 6 4.7788 1.5290 -0.0003 6 6 3.6439 -0.6980 0.0047 7 6 2.3372 -1.1433 -0.0006 8 6 1.8915 -2.5485 -0.0003 9 8 0.7038 -2.8097 0.0005 10 7 2.8003 -3.5438 -0.0009 11 6 2.3574 -4.9402 -0.0001 12 6 3.5782 -5.8624 -0.0017 13 1 4.1806 -5.6761 0.8874 14 6 3.1188 -7.3283 -0.0191 15 6 4.3413 -8.2384 -0.1578 16 6 5.0532 -7.9414 -1.4796 17 6 5.5313 -6.4860 -1.4816 18 7 4.3840 -5.6110 -1.2042 19 6 4.0750 -4.5773 -2.0475 20 1 3.0461 -4.2758 -2.1779 21 6 5.0836 -3.9206 -2.7392 22 7 6.3431 -4.1210 -2.4136 23 14 4.6534 -2.7524 -4.1319 24 1 3.8014 -1.6534 -3.6109 25 1 5.9002 -2.1831 -4.7035 26 1 3.9166 -3.4917 -5.1882 27 1 -0.3634 -0.0007 1.0275 28 1 -0.3633 0.8904 -0.5133 29 1 -0.3633 -0.8896 -0.5145 30 1 5.0683 1.7482 1.0275 31 1 5.6059 1.0393 -0.5142 32 1 4.5308 2.4579 -0.5138 33 1 4.5297 -1.3158 0.0093 34 1 3.7477 -3.3355 -0.0019 35 1 1.7569 -5.1314 -0.8895 36 1 1.7586 -5.1310 0.8905 37 1 2.4464 -7.4913 -0.8615 38 1 2.5986 -7.5568 0.9111 39 1 4.0217 -9.2804 -0.1436 40 1 5.0248 -8.0569 0.6717 41 1 4.3627 -8.0987 -2.3080 42 1 5.9103 -8.6059 -1.5890 43 1 5.9506 -6.2404 -2.4573 44 1 6.2908 -6.3476 -0.7122 45 1 7.0479 -3.6619 -2.8967 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001024368043.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:50:38 Heat of formation + Delta-G solvation = 54.082986 kcal Electronic energy + Delta-G solvation = -26481.340005 eV Core-core repulsion = 22921.858480 eV Total energy + Delta-G solvation = -3559.481525 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 306.180 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.10601 -38.77725 -37.50998 -34.20074 -33.64241 -33.06807 -31.20082 -30.00333 -29.74766 -29.15287 -26.27946 -25.52414 -24.49878 -22.21254 -21.98018 -20.77542 -19.77427 -19.37531 -19.02318 -17.41267 -16.34745 -15.68590 -15.54072 -15.40619 -14.93926 -14.22814 -14.02163 -13.99374 -13.70111 -13.46579 -13.23945 -13.16489 -12.91445 -12.80312 -12.42291 -12.36173 -12.03683 -12.00452 -11.71845 -11.65239 -11.17608 -10.95280 -10.80004 -10.62756 -10.54862 -10.30825 -10.15597 -10.00685 -9.54065 -9.43911 -9.15720 -9.09270 -8.59455 -8.43318 -8.03089 -6.66647 -5.86986 -3.34329 1.83693 2.49032 2.54614 3.31648 3.35542 3.42592 3.97802 4.12979 4.40780 4.54085 4.95335 5.10035 5.10674 5.23820 5.30067 5.35421 5.46027 5.53884 5.63218 5.67502 5.76147 5.83122 5.91859 5.99070 6.07582 6.14891 6.17837 6.26809 6.36026 6.38532 6.44185 6.60905 6.71239 6.73540 6.81103 6.86261 7.00427 7.01709 7.29725 7.37607 7.64506 7.77663 7.81672 8.38356 8.42672 9.03310 9.14458 9.75248 10.33772 11.19171 Molecular weight = 306.18amu Principal moments of inertia in cm(-1) A = 0.013920 B = 0.005521 C = 0.004535 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2010.953616 B = 5070.537790 C = 6173.098544 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 C 0.127 3.873 3 N -0.313 5.313 4 N -0.367 5.367 5 C 0.099 3.901 6 C 0.109 3.891 7 C -0.280 4.280 8 C 0.588 3.412 9 O -0.567 6.567 10 N -0.693 5.693 11 C 0.137 3.863 12 C 0.160 3.840 13 H 0.032 0.968 14 C -0.127 4.127 15 C -0.107 4.107 16 C -0.144 4.144 17 C 0.173 3.827 18 N -0.588 5.588 19 C -0.245 4.245 20 H 0.070 0.930 21 C 0.009 3.991 22 N -0.902 5.902 23 Si 0.888 3.112 24 H -0.281 1.281 25 H -0.292 1.292 26 H -0.283 1.283 27 H 0.076 0.924 28 H 0.065 0.935 29 H 0.096 0.904 30 H 0.076 0.924 31 H 0.091 0.909 32 H 0.089 0.911 33 H 0.186 0.814 34 H 0.410 0.590 35 H 0.065 0.935 36 H 0.055 0.945 37 H 0.061 0.939 38 H 0.051 0.949 39 H 0.044 0.956 40 H 0.052 0.948 41 H 0.053 0.947 42 H 0.045 0.955 43 H 0.085 0.915 44 H 0.018 0.982 45 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.664 3.564 6.315 7.439 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.040 4.040 3 N -0.135 5.135 4 N -0.146 5.146 5 C -0.042 4.042 6 C -0.042 4.042 7 C -0.295 4.295 8 C 0.375 3.625 9 O -0.448 6.448 10 N -0.343 5.343 11 C 0.013 3.987 12 C 0.053 3.947 13 H 0.049 0.951 14 C -0.167 4.167 15 C -0.145 4.145 16 C -0.183 4.183 17 C 0.048 3.952 18 N -0.312 5.312 19 C -0.375 4.375 20 H 0.088 0.912 21 C -0.190 4.190 22 N -0.547 5.547 23 Si 0.718 3.282 24 H -0.207 1.207 25 H -0.218 1.218 26 H -0.210 1.210 27 H 0.094 0.906 28 H 0.084 0.916 29 H 0.115 0.885 30 H 0.095 0.905 31 H 0.110 0.890 32 H 0.108 0.892 33 H 0.203 0.797 34 H 0.248 0.752 35 H 0.083 0.917 36 H 0.073 0.927 37 H 0.079 0.921 38 H 0.069 0.931 39 H 0.062 0.938 40 H 0.071 0.929 41 H 0.071 0.929 42 H 0.064 0.936 43 H 0.103 0.897 44 H 0.036 0.964 45 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -2.147 4.833 6.233 8.174 hybrid contribution 0.696 -0.180 -0.947 1.189 sum -1.451 4.652 5.286 7.190 Atomic orbital electron populations 1.20288 0.85955 1.03781 1.03129 1.22413 0.97076 0.88973 0.95566 1.77067 0.86114 1.22846 1.27481 1.48194 1.05885 1.04858 1.55616 1.21935 0.84172 0.94634 1.03475 1.23262 0.99546 0.84903 0.96493 1.20330 0.91886 0.94906 1.22390 1.17171 0.85590 0.83541 0.76199 1.90658 1.16557 1.84496 1.53088 1.45814 1.10297 1.05385 1.72835 1.21240 0.96439 0.80337 1.00677 1.20835 0.91234 0.91707 0.90943 0.95064 1.22011 0.97551 0.96589 1.00523 1.21362 0.97192 0.97549 0.98392 1.22193 0.99037 1.00554 0.96555 1.20761 0.88320 0.84778 1.01357 1.44086 1.32076 1.32580 1.22486 1.19197 0.92205 1.07806 1.18279 0.91215 1.25048 0.95471 0.98230 1.00260 1.69987 0.98354 1.45026 1.41332 0.86578 0.77025 0.81388 0.83198 1.20672 1.21767 1.20956 0.90577 0.91565 0.88542 0.90536 0.88992 0.89230 0.79662 0.75235 0.91656 0.92693 0.92066 0.93066 0.93773 0.92928 0.92856 0.93610 0.89697 0.96419 0.93673 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.09 9.92 36.00 0.36 -0.73 16 2 C 0.13 2.24 7.26 -82.02 -0.60 1.65 16 3 N -0.31 -5.36 12.50 33.90 0.42 -4.93 16 4 N -0.37 -5.58 3.98 -67.60 -0.27 -5.85 16 5 C 0.10 1.00 11.44 59.85 0.68 1.68 16 6 C 0.11 1.78 10.99 -16.56 -0.18 1.59 16 7 C -0.28 -5.18 6.13 -105.07 -0.64 -5.82 16 8 C 0.59 11.75 7.81 -12.52 -0.10 11.65 16 9 O -0.57 -12.34 14.92 5.27 0.08 -12.26 16 10 N -0.69 -13.37 3.85 -61.38 -0.24 -13.61 16 11 C 0.14 2.58 4.44 -4.04 -0.02 2.56 16 12 C 0.16 3.02 3.03 -67.37 -0.20 2.81 16 13 H 0.03 0.61 8.14 -51.93 -0.42 0.18 16 14 C -0.13 -2.10 5.40 -26.39 -0.14 -2.24 16 15 C -0.11 -1.73 5.88 -26.69 -0.16 -1.88 16 16 C -0.14 -2.62 6.08 -26.61 -0.16 -2.79 16 17 C 0.17 3.80 5.25 -3.71 -0.02 3.78 16 18 N -0.59 -13.05 2.97 -164.52 -0.49 -13.54 16 19 C -0.25 -5.96 6.93 -15.06 -0.10 -6.07 16 20 H 0.07 1.78 5.91 -52.48 -0.31 1.47 16 21 C 0.01 0.22 5.01 -17.43 -0.09 0.13 16 22 N -0.90 -23.46 11.16 55.49 0.62 -22.84 16 23 Si 0.89 20.85 29.57 -169.99 -5.03 15.82 16 24 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 25 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 26 H -0.28 -6.84 7.11 56.52 0.40 -6.43 16 27 H 0.08 1.02 8.14 -51.93 -0.42 0.60 16 28 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 29 H 0.10 1.58 6.55 -51.93 -0.34 1.24 16 30 H 0.08 0.62 8.14 -51.93 -0.42 0.19 16 31 H 0.09 0.80 8.14 -51.93 -0.42 0.37 16 32 H 0.09 0.81 8.14 -51.93 -0.42 0.39 16 33 H 0.19 2.72 7.46 -52.49 -0.39 2.33 16 34 H 0.41 8.03 6.31 -40.82 -0.26 7.78 16 35 H 0.07 1.35 7.41 -51.93 -0.39 0.97 16 36 H 0.05 0.96 8.14 -51.93 -0.42 0.53 16 37 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 38 H 0.05 0.74 8.14 -51.93 -0.42 0.31 16 39 H 0.04 0.63 8.14 -51.93 -0.42 0.21 16 40 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 41 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 42 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 43 H 0.08 2.12 6.18 -51.93 -0.32 1.80 16 44 H 0.02 0.41 8.14 -51.93 -0.42 -0.02 16 45 H 0.25 6.52 8.31 -40.82 -0.34 6.18 16 LS Contribution 357.97 15.07 5.39 5.39 Total: -1.00 -29.84 357.97 -7.93 -37.77 By element: Atomic # 1 Polarization: 14.77 SS G_CDS: -7.06 Total: 7.71 kcal Atomic # 6 Polarization: 7.70 SS G_CDS: -1.37 Total: 6.33 kcal Atomic # 7 Polarization: -60.82 SS G_CDS: 0.05 Total: -60.77 kcal Atomic # 8 Polarization: -12.34 SS G_CDS: 0.08 Total: -12.26 kcal Atomic # 14 Polarization: 20.85 SS G_CDS: -5.03 Total: 15.82 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -29.84 -7.93 -37.77 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001024368043.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.857 kcal (2) G-P(sol) polarization free energy of solvation -29.840 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 62.018 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.935 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.774 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.083 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds