Wall clock time and date at job start Tue Mar 31 2020 03:52:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86800 * 119.99839 * 2 1 4 4 H 1.48492 * 109.46981 * 269.99767 * 3 2 1 5 5 H 1.48506 * 109.47133 * 30.00190 * 3 2 1 6 6 H 1.48500 * 109.46855 * 149.99766 * 3 2 1 7 7 C 1.38807 * 120.00081 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00371 * 180.02562 * 7 2 1 9 9 N 1.36941 * 120.00074 * 0.02562 * 7 2 1 10 10 C 1.46498 * 120.00148 * 180.02562 * 9 7 2 11 11 H 1.09000 * 110.59301 * 36.28353 * 10 9 7 12 12 C 1.55059 * 110.53189 * 273.54585 * 10 9 7 13 13 C 1.55057 * 102.14033 * 201.34923 * 12 10 9 14 14 C 1.54316 * 103.93566 * 40.03914 * 13 12 10 15 15 H 1.08999 * 111.69220 * 98.07771 * 14 13 12 16 16 C 1.53785 * 109.05785 * 222.03251 * 14 13 12 17 17 N 1.47218 * 106.37485 * 132.43011 * 16 14 13 18 18 C 1.34780 * 126.69968 * 148.70272 * 17 16 14 19 19 O 1.21281 * 120.00041 * 180.02562 * 18 17 16 20 20 C 1.50696 * 120.00092 * 0.02562 * 18 17 16 21 21 N 1.46495 * 109.47379 * 179.97438 * 20 18 17 22 22 C 1.34604 * 126.43776 * 124.70934 * 21 20 18 23 23 N 1.31071 * 106.67747 * 179.87974 * 22 21 20 24 24 N 1.28844 * 107.99469 * 0.39212 * 23 22 21 25 25 N 1.28743 * 109.39041 * 359.74738 * 24 23 22 26 26 C 1.47212 * 106.59810 * 328.71953 * 17 16 14 27 27 C 1.53772 * 106.38060 * 31.28015 * 26 17 16 28 28 H 1.09004 * 111.70813 * 102.76682 * 27 26 17 29 29 H 0.96998 * 119.99941 * 0.02562 * 1 2 3 30 30 H 0.97001 * 119.99699 * 0.02562 * 9 7 2 31 31 H 1.09002 * 110.90474 * 83.12729 * 12 10 9 32 32 H 1.09003 * 110.90440 * 319.56952 * 12 10 9 33 33 H 1.08998 * 110.53091 * 158.65723 * 13 12 10 34 34 H 1.09007 * 110.53273 * 281.42309 * 13 12 10 35 35 H 1.08998 * 110.07454 * 251.65205 * 16 14 13 36 36 H 1.08996 * 110.07521 * 13.14857 * 16 14 13 37 37 H 1.08999 * 109.47073 * 300.00594 * 20 18 17 38 38 H 1.09005 * 109.46930 * 60.00338 * 20 18 17 39 39 H 1.07994 * 126.65968 * 0.02757 * 22 21 20 40 40 H 1.08998 * 110.07297 * 150.51336 * 26 17 16 41 41 H 1.09007 * 110.07402 * 271.99634 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4977 2.0464 -1.4000 5 1 1.4476 2.6527 0.7001 6 1 3.5477 1.4402 0.7001 7 6 2.0102 -1.2021 0.0005 8 1 3.0903 -1.2022 0.0010 9 7 1.3256 -2.3881 0.0005 10 6 2.0581 -3.6568 0.0017 11 1 2.9616 -3.5773 0.6062 12 6 2.4089 -4.0835 -1.4472 13 6 2.6399 -5.6088 -1.2910 14 6 1.5334 -6.0539 -0.3117 15 1 0.6768 -6.4764 -0.8368 16 6 2.1280 -7.0485 0.6993 17 7 1.6818 -6.6042 2.0300 18 6 1.4339 -7.3866 3.0992 19 8 1.0689 -6.8889 4.1432 20 6 1.6102 -8.8797 2.9974 21 7 1.2813 -9.4992 4.2835 22 6 0.3790 -10.4757 4.4930 23 7 0.3997 -10.7379 5.7771 24 7 1.2633 -9.9570 6.3288 25 7 1.7979 -9.2073 5.4291 26 6 1.5589 -5.1387 1.9648 27 6 1.1601 -4.8009 0.5186 28 1 0.0993 -4.5636 0.4379 29 1 -0.4850 0.8400 -0.0004 30 1 0.3556 -2.3880 -0.0002 31 1 3.3159 -3.5859 -1.7904 32 1 1.5779 -3.8832 -2.1236 33 1 2.5266 -6.1128 -2.2508 34 1 3.6256 -5.8050 -0.8691 35 1 1.7581 -8.0537 0.4970 36 1 3.2164 -7.0324 0.6441 37 1 0.9487 -9.2719 2.2249 38 1 2.6447 -9.1066 2.7393 39 1 -0.2400 -10.9525 3.7474 40 1 0.7878 -4.7969 2.6552 41 1 2.5132 -4.6720 2.2094 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001026193021.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:52:17 Heat of formation + Delta-G solvation = 109.823277 kcal Electronic energy + Delta-G solvation = -24902.846977 eV Core-core repulsion = 21242.242189 eV Total energy + Delta-G solvation = -3660.604788 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 306.155 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -44.40261 -40.66948 -38.86885 -35.74346 -35.42806 -33.53113 -32.68414 -31.19870 -30.62419 -28.81843 -28.55937 -25.29602 -24.31838 -24.06448 -23.23847 -22.82949 -20.52167 -19.65961 -19.37642 -18.19444 -17.80546 -17.13489 -16.92325 -16.32985 -16.12808 -15.66965 -15.28585 -14.64667 -14.39379 -14.01170 -13.79324 -13.33189 -13.15840 -13.07858 -12.71097 -12.62633 -12.38256 -12.07564 -11.80366 -11.46603 -11.37958 -11.28020 -11.07216 -10.85172 -10.80689 -10.64308 -10.55029 -10.47613 -10.32128 -10.13282 -10.01457 -9.74033 -8.96770 -8.94616 -7.03465 -5.84042 -3.13474 0.96528 1.50230 2.05538 2.11337 2.59145 3.39086 3.44845 3.46428 3.67689 3.90165 3.90605 4.24760 4.32173 4.47394 4.52429 4.60962 4.65121 5.01207 5.13722 5.19462 5.23539 5.38750 5.41508 5.48813 5.58774 5.64240 5.74335 5.78800 5.79706 5.88562 6.00768 6.08123 6.13550 6.25003 6.40426 6.48484 6.67396 6.91656 7.17145 7.63560 7.69284 8.34220 8.38243 9.45712 10.01638 10.35284 11.38349 Molecular weight = 306.15amu Principal moments of inertia in cm(-1) A = 0.023515 B = 0.002884 C = 0.002667 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1190.452721 B = 9707.452412 C =10496.906262 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C -0.011 4.011 3 Si 0.906 3.094 4 H -0.290 1.290 5 H -0.291 1.291 6 H -0.282 1.282 7 C -0.242 4.242 8 H 0.070 0.930 9 N -0.720 5.720 10 C 0.185 3.815 11 H 0.056 0.944 12 C -0.143 4.143 13 C -0.117 4.117 14 C -0.099 4.099 15 H 0.088 0.912 16 C 0.098 3.902 17 N -0.611 5.611 18 C 0.515 3.485 19 O -0.511 6.511 20 C 0.100 3.900 21 N -0.301 5.301 22 C 0.159 3.841 23 N -0.307 5.307 24 N -0.079 5.079 25 N -0.061 5.061 26 C 0.116 3.884 27 C -0.104 4.104 28 H 0.091 0.909 29 H 0.256 0.744 30 H 0.384 0.616 31 H 0.061 0.939 32 H 0.067 0.933 33 H 0.061 0.939 34 H 0.065 0.935 35 H 0.072 0.928 36 H 0.078 0.922 37 H 0.142 0.858 38 H 0.135 0.865 39 H 0.235 0.765 40 H 0.081 0.919 41 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.444 -22.380 -3.129 22.858 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.579 5.579 2 C -0.207 4.207 3 Si 0.737 3.263 4 H -0.217 1.217 5 H -0.217 1.217 6 H -0.207 1.207 7 C -0.373 4.373 8 H 0.088 0.912 9 N -0.361 5.361 10 C 0.074 3.926 11 H 0.074 0.926 12 C -0.184 4.184 13 C -0.156 4.156 14 C -0.119 4.119 15 H 0.107 0.893 16 C -0.024 4.024 17 N -0.345 5.345 18 C 0.300 3.700 19 O -0.385 6.385 20 C -0.026 4.026 21 N -0.103 5.103 22 C -0.139 4.139 23 N -0.155 5.155 24 N -0.073 5.073 25 N -0.047 5.047 26 C -0.005 4.005 27 C -0.125 4.125 28 H 0.109 0.891 29 H 0.066 0.934 30 H 0.218 0.782 31 H 0.080 0.920 32 H 0.086 0.914 33 H 0.080 0.920 34 H 0.084 0.916 35 H 0.091 0.909 36 H 0.096 0.904 37 H 0.160 0.840 38 H 0.153 0.847 39 H 0.251 0.749 40 H 0.099 0.901 41 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 3.786 -21.832 -1.079 22.184 hybrid contribution -0.190 0.928 -1.325 1.628 sum 3.596 -20.904 -2.404 21.347 Atomic orbital electron populations 1.69650 1.05135 1.25799 1.57360 1.24745 0.95501 0.97756 1.02738 0.86209 0.78722 0.83864 0.77504 1.21704 1.21748 1.20717 1.19205 0.90977 0.84040 1.43102 0.91163 1.42426 1.05698 0.99691 1.88243 1.21230 0.93288 0.85044 0.93061 0.92582 1.23313 1.01547 0.92713 1.00836 1.22514 0.97034 0.97959 0.98051 1.22570 0.98919 0.94830 0.95554 0.89347 1.22491 0.99830 0.98451 0.81654 1.48574 1.66139 1.08924 1.10895 1.19665 0.79238 0.87451 0.83635 1.90879 1.45418 1.74518 1.27689 1.21988 1.06594 0.93104 0.80872 1.48186 1.27335 1.25916 1.08841 1.27736 0.96105 0.92873 0.97228 1.74987 1.15928 1.20613 1.03934 1.78692 1.05520 1.02097 1.21002 1.79045 1.19329 1.18558 0.87810 1.22293 1.02681 0.77523 0.98012 1.22904 1.01734 0.95403 0.92418 0.89051 0.93428 0.78164 0.92037 0.91450 0.92041 0.91601 0.90925 0.90385 0.84000 0.84719 0.74858 0.90062 0.90475 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -27.30 13.06 55.49 0.72 -26.57 16 2 C -0.01 -0.31 5.50 -17.43 -0.10 -0.40 16 3 Si 0.91 21.83 29.55 -169.99 -5.02 16.81 16 4 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 5 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 6 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 7 C -0.24 -6.37 9.98 -15.06 -0.15 -6.52 16 8 H 0.07 1.80 7.83 -52.49 -0.41 1.39 16 9 N -0.72 -16.61 5.23 -51.69 -0.27 -16.88 16 10 C 0.18 3.16 3.02 -66.13 -0.20 2.96 16 11 H 0.06 1.00 7.16 -51.93 -0.37 0.62 16 12 C -0.14 -2.12 6.60 -24.56 -0.16 -2.28 16 13 C -0.12 -1.16 6.35 -24.95 -0.16 -1.32 16 14 C -0.10 -0.93 3.91 -88.53 -0.35 -1.28 16 15 H 0.09 0.74 8.14 -51.93 -0.42 0.32 16 16 C 0.10 0.68 6.38 -3.24 -0.02 0.66 16 17 N -0.61 -6.33 3.32 -171.58 -0.57 -6.90 16 18 C 0.52 5.73 7.90 -10.99 -0.09 5.65 16 19 O -0.51 -8.55 15.93 5.56 0.09 -8.46 16 20 C 0.10 0.58 5.95 -5.20 -0.03 0.55 16 21 N -0.30 -2.88 3.19 -63.74 -0.20 -3.08 16 22 C 0.16 1.27 12.79 -90.38 -1.16 0.11 16 23 N -0.31 -3.84 12.36 29.59 0.37 -3.48 16 24 N -0.08 -1.19 13.43 60.35 0.81 -0.38 16 25 N -0.06 -0.86 12.29 60.35 0.74 -0.12 16 26 C 0.12 1.59 6.54 -3.25 -0.02 1.57 16 27 C -0.10 -1.42 3.58 -88.52 -0.32 -1.73 16 28 H 0.09 1.37 7.82 -51.93 -0.41 0.96 16 29 H 0.26 7.31 8.31 -40.82 -0.34 6.97 16 30 H 0.38 9.52 7.59 -40.82 -0.31 9.21 16 31 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 32 H 0.07 1.09 8.14 -51.93 -0.42 0.67 16 33 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 34 H 0.07 0.59 7.19 -51.92 -0.37 0.21 16 35 H 0.07 0.24 7.31 -51.93 -0.38 -0.14 16 36 H 0.08 0.48 7.13 -51.93 -0.37 0.11 16 37 H 0.14 0.13 7.80 -51.93 -0.40 -0.27 16 38 H 0.14 0.42 8.14 -51.93 -0.42 -0.01 16 39 H 0.24 0.41 8.06 -52.49 -0.42 -0.01 16 40 H 0.08 1.30 7.92 -51.93 -0.41 0.88 16 41 H 0.08 1.12 7.13 -51.93 -0.37 0.75 16 LS Contribution 340.10 15.07 5.13 5.13 Total: -1.00 -36.74 340.10 -6.44 -43.17 By element: Atomic # 1 Polarization: 8.29 SS G_CDS: -5.48 Total: 2.81 kcal Atomic # 6 Polarization: 0.70 SS G_CDS: -2.74 Total: -2.04 kcal Atomic # 7 Polarization: -59.01 SS G_CDS: 1.60 Total: -57.41 kcal Atomic # 8 Polarization: -8.55 SS G_CDS: 0.09 Total: -8.46 kcal Atomic # 14 Polarization: 21.83 SS G_CDS: -5.02 Total: 16.81 kcal Total LS contribution 5.13 Total: 5.13 kcal Total: -36.74 -6.44 -43.17 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001026193021.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 152.996 kcal (2) G-P(sol) polarization free energy of solvation -36.738 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 116.259 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.435 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.173 kcal (6) G-S(sol) free energy of system = (1) + (5) 109.823 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds