Wall clock time and date at job start Tue Mar 31 2020 03:52:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86800 * 119.99839 * 2 1 4 4 H 1.48492 * 109.46981 * 269.99767 * 3 2 1 5 5 H 1.48506 * 109.47133 * 30.00190 * 3 2 1 6 6 H 1.48500 * 109.46855 * 149.99766 * 3 2 1 7 7 C 1.38807 * 120.00081 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00371 * 180.02562 * 7 2 1 9 9 N 1.36941 * 120.00074 * 0.02562 * 7 2 1 10 10 C 1.46498 * 120.00148 * 180.02562 * 9 7 2 11 11 H 1.09000 * 110.59301 * 36.28353 * 10 9 7 12 12 C 1.55059 * 110.53189 * 273.54585 * 10 9 7 13 13 C 1.55057 * 102.14033 * 201.34923 * 12 10 9 14 14 C 1.54316 * 103.93566 * 40.03914 * 13 12 10 15 15 H 1.08999 * 111.69220 * 98.07771 * 14 13 12 16 16 C 1.53785 * 109.05785 * 222.03251 * 14 13 12 17 17 N 1.47218 * 106.37485 * 132.43011 * 16 14 13 18 18 C 1.34780 * 126.69968 * 148.70272 * 17 16 14 19 19 O 1.21281 * 120.00041 * 180.02562 * 18 17 16 20 20 C 1.50696 * 120.00092 * 0.02562 * 18 17 16 21 21 N 1.46495 * 109.47379 * 179.97438 * 20 18 17 22 22 C 1.34604 * 126.43776 * 124.70934 * 21 20 18 23 23 N 1.31071 * 106.67747 * 179.87974 * 22 21 20 24 24 N 1.28844 * 107.99469 * 0.39212 * 23 22 21 25 25 N 1.28743 * 109.39041 * 359.74738 * 24 23 22 26 26 C 1.47212 * 106.59810 * 328.71953 * 17 16 14 27 27 C 1.53772 * 106.38060 * 31.28015 * 26 17 16 28 28 H 1.09004 * 111.70813 * 102.76682 * 27 26 17 29 29 H 0.96998 * 119.99941 * 0.02562 * 1 2 3 30 30 H 0.97001 * 119.99699 * 0.02562 * 9 7 2 31 31 H 1.09002 * 110.90474 * 83.12729 * 12 10 9 32 32 H 1.09003 * 110.90440 * 319.56952 * 12 10 9 33 33 H 1.08998 * 110.53091 * 158.65723 * 13 12 10 34 34 H 1.09007 * 110.53273 * 281.42309 * 13 12 10 35 35 H 1.08998 * 110.07454 * 251.65205 * 16 14 13 36 36 H 1.08996 * 110.07521 * 13.14857 * 16 14 13 37 37 H 1.08999 * 109.47073 * 300.00594 * 20 18 17 38 38 H 1.09005 * 109.46930 * 60.00338 * 20 18 17 39 39 H 1.07994 * 126.65968 * 0.02757 * 22 21 20 40 40 H 1.08998 * 110.07297 * 150.51336 * 26 17 16 41 41 H 1.09007 * 110.07402 * 271.99634 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4977 2.0464 -1.4000 5 1 1.4476 2.6527 0.7001 6 1 3.5477 1.4402 0.7001 7 6 2.0102 -1.2021 0.0005 8 1 3.0903 -1.2022 0.0010 9 7 1.3256 -2.3881 0.0005 10 6 2.0581 -3.6568 0.0017 11 1 2.9616 -3.5773 0.6062 12 6 2.4089 -4.0835 -1.4472 13 6 2.6399 -5.6088 -1.2910 14 6 1.5334 -6.0539 -0.3117 15 1 0.6768 -6.4764 -0.8368 16 6 2.1280 -7.0485 0.6993 17 7 1.6818 -6.6042 2.0300 18 6 1.4339 -7.3866 3.0992 19 8 1.0689 -6.8889 4.1432 20 6 1.6102 -8.8797 2.9974 21 7 1.2813 -9.4992 4.2835 22 6 0.3790 -10.4757 4.4930 23 7 0.3997 -10.7379 5.7771 24 7 1.2633 -9.9570 6.3288 25 7 1.7979 -9.2073 5.4291 26 6 1.5589 -5.1387 1.9648 27 6 1.1601 -4.8009 0.5186 28 1 0.0993 -4.5636 0.4379 29 1 -0.4850 0.8400 -0.0004 30 1 0.3556 -2.3880 -0.0002 31 1 3.3159 -3.5859 -1.7904 32 1 1.5779 -3.8832 -2.1236 33 1 2.5266 -6.1128 -2.2508 34 1 3.6256 -5.8050 -0.8691 35 1 1.7581 -8.0537 0.4970 36 1 3.2164 -7.0324 0.6441 37 1 0.9487 -9.2719 2.2249 38 1 2.6447 -9.1066 2.7393 39 1 -0.2400 -10.9525 3.7474 40 1 0.7878 -4.7969 2.6552 41 1 2.5132 -4.6720 2.2094 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001026193021.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:52:16 Heat of formation + Delta-G solvation = 81.614953 kcal Electronic energy + Delta-G solvation = -24904.070182 eV Core-core repulsion = 21242.242189 eV Total energy + Delta-G solvation = -3661.827993 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 306.155 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -45.16546 -41.57350 -39.86191 -36.78669 -36.42532 -35.07997 -33.47111 -32.74166 -31.62226 -29.97505 -29.41269 -26.73939 -25.20220 -24.80085 -24.69540 -23.80838 -21.62106 -20.54682 -20.45308 -19.16268 -18.85488 -18.38635 -17.78273 -17.15867 -16.98216 -16.76480 -16.26518 -15.87731 -15.75519 -15.07940 -14.90106 -14.67766 -14.36565 -13.95994 -13.71214 -13.49805 -13.31567 -13.19978 -13.04306 -12.91637 -12.61170 -12.34203 -12.23815 -12.15785 -12.11437 -11.92443 -11.69677 -11.56647 -11.47635 -11.42008 -11.36326 -11.01991 -10.84205 -9.83710 -8.97217 -7.95746 -5.22869 0.26149 0.96458 1.26150 1.34836 1.45297 1.46519 1.54466 1.83893 2.54848 3.07267 3.36075 3.43350 3.47638 3.50859 3.69894 3.74924 3.98739 4.00919 4.07660 4.23558 4.36524 4.40385 4.50111 4.51789 4.61161 4.66183 4.71698 4.76690 4.85543 4.98458 5.06489 5.09919 5.14348 5.24441 5.31586 5.42888 5.48633 5.55377 5.65665 6.27584 6.39900 6.90009 7.33210 7.57973 8.11936 8.31880 9.27854 Molecular weight = 306.15amu Principal moments of inertia in cm(-1) A = 0.023515 B = 0.002884 C = 0.002667 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1190.452721 B = 9707.452412 C =10496.906262 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.970 5.970 2 C -0.078 4.078 3 Si 0.967 3.033 4 H -0.286 1.286 5 H -0.299 1.299 6 H -0.271 1.271 7 C -0.234 4.234 8 H 0.074 0.926 9 N -0.736 5.736 10 C 0.172 3.828 11 H 0.046 0.954 12 C -0.141 4.141 13 C -0.102 4.102 14 C -0.089 4.089 15 H 0.111 0.889 16 C 0.097 3.903 17 N -0.605 5.605 18 C 0.508 3.492 19 O -0.582 6.582 20 C 0.104 3.896 21 N -0.300 5.300 22 C 0.186 3.814 23 N -0.348 5.348 24 N -0.120 5.120 25 N -0.100 5.100 26 C 0.120 3.880 27 C -0.099 4.099 28 H 0.070 0.930 29 H 0.249 0.751 30 H 0.371 0.629 31 H 0.049 0.951 32 H 0.048 0.952 33 H 0.090 0.910 34 H 0.084 0.916 35 H 0.133 0.867 36 H 0.096 0.904 37 H 0.208 0.792 38 H 0.173 0.827 39 H 0.299 0.701 40 H 0.043 0.957 41 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.568 -26.237 -5.816 27.259 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.622 5.622 2 C -0.270 4.270 3 Si 0.797 3.203 4 H -0.213 1.213 5 H -0.226 1.226 6 H -0.196 1.196 7 C -0.366 4.366 8 H 0.092 0.908 9 N -0.375 5.375 10 C 0.064 3.936 11 H 0.064 0.936 12 C -0.181 4.181 13 C -0.140 4.140 14 C -0.109 4.109 15 H 0.129 0.871 16 C -0.023 4.023 17 N -0.338 5.338 18 C 0.296 3.704 19 O -0.461 6.461 20 C -0.019 4.019 21 N -0.103 5.103 22 C -0.111 4.111 23 N -0.195 5.195 24 N -0.114 5.114 25 N -0.087 5.087 26 C -0.003 4.003 27 C -0.120 4.120 28 H 0.089 0.911 29 H 0.058 0.942 30 H 0.203 0.797 31 H 0.068 0.932 32 H 0.067 0.933 33 H 0.108 0.892 34 H 0.102 0.898 35 H 0.151 0.849 36 H 0.114 0.886 37 H 0.225 0.775 38 H 0.190 0.810 39 H 0.314 0.686 40 H 0.061 0.939 41 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 4.982 -25.753 -3.819 26.507 hybrid contribution -0.534 2.113 -0.562 2.251 sum 4.447 -23.640 -4.381 24.450 Atomic orbital electron populations 1.69803 1.06553 1.25873 1.59923 1.25503 0.96306 1.00964 1.04191 0.85227 0.77715 0.79954 0.77438 1.21273 1.22633 1.19592 1.19585 0.91325 0.85346 1.40358 0.90765 1.42656 1.05313 1.01125 1.88447 1.21546 0.93159 0.83938 0.94996 0.93561 1.23135 1.00155 0.97003 0.97857 1.22472 0.98132 0.93507 0.99858 1.22599 0.99723 0.93014 0.95543 0.87057 1.22813 1.00999 1.00290 0.78213 1.48581 1.65637 1.07046 1.12551 1.20706 0.77490 0.89837 0.82382 1.90865 1.48526 1.76299 1.30399 1.22533 1.10652 0.88269 0.80418 1.48456 1.27033 1.26018 1.08783 1.28846 0.94406 0.91065 0.96793 1.74871 1.16605 1.21548 1.06519 1.78653 1.07007 1.03301 1.22469 1.78953 1.20851 1.19408 0.89516 1.21937 1.00492 0.80627 0.97242 1.22694 0.99638 0.96437 0.93188 0.91143 0.94187 0.79706 0.93249 0.93271 0.89163 0.89785 0.84915 0.88583 0.77489 0.80990 0.68610 0.93856 0.92070 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -59.25 13.06 21.65 0.28 -58.97 16 2 C -0.08 -4.42 5.50 84.86 0.47 -3.96 16 3 Si 0.97 46.07 29.55 68.60 2.03 48.10 16 4 H -0.29 -13.28 7.11 99.48 0.71 -12.57 16 5 H -0.30 -14.55 7.11 99.48 0.71 -13.84 16 6 H -0.27 -12.25 7.11 99.48 0.71 -11.54 16 7 C -0.23 -12.68 9.98 84.03 0.84 -11.85 16 8 H 0.07 3.87 7.83 -2.91 -0.02 3.85 16 9 N -0.74 -35.43 5.23 -317.44 -1.66 -37.09 16 10 C 0.17 5.98 3.02 46.16 0.14 6.11 16 11 H 0.05 1.69 7.16 -2.39 -0.02 1.67 16 12 C -0.14 -4.01 6.60 32.00 0.21 -3.80 16 13 C -0.10 -1.56 6.35 31.75 0.20 -1.36 16 14 C -0.09 -1.28 3.91 -9.44 -0.04 -1.32 16 15 H 0.11 1.20 8.14 -2.39 -0.02 1.18 16 16 C 0.10 0.74 6.38 86.51 0.55 1.29 16 17 N -0.61 -10.81 3.32 -815.15 -2.71 -13.52 16 18 C 0.51 10.00 7.90 87.66 0.69 10.69 16 19 O -0.58 -19.80 15.93 -3.03 -0.05 -19.85 16 20 C 0.10 0.60 5.95 85.63 0.51 1.11 16 21 N -0.30 -4.74 3.19 -355.58 -1.14 -5.87 16 22 C 0.19 2.23 12.79 180.27 2.31 4.53 16 23 N -0.35 -8.27 12.36 -60.29 -0.74 -9.01 16 24 N -0.12 -3.65 13.43 37.01 0.50 -3.15 16 25 N -0.10 -2.77 12.29 37.02 0.45 -2.31 16 26 C 0.12 3.36 6.54 86.50 0.57 3.93 16 27 C -0.10 -2.66 3.58 -9.43 -0.03 -2.69 16 28 H 0.07 2.19 7.82 -2.38 -0.02 2.17 16 29 H 0.25 14.86 8.31 -92.71 -0.77 14.09 16 30 H 0.37 19.47 7.59 -92.71 -0.70 18.77 16 31 H 0.05 1.49 8.14 -2.39 -0.02 1.47 16 32 H 0.05 1.57 8.14 -2.39 -0.02 1.55 16 33 H 0.09 0.99 8.14 -2.39 -0.02 0.97 16 34 H 0.08 1.04 7.19 -2.38 -0.02 1.03 16 35 H 0.13 -0.43 7.31 -2.39 -0.02 -0.45 16 36 H 0.10 0.50 7.13 -2.39 -0.02 0.49 16 37 H 0.21 -1.53 7.80 -2.39 -0.02 -1.55 16 38 H 0.17 -0.17 8.14 -2.38 -0.02 -0.19 16 39 H 0.30 -1.03 8.06 -2.91 -0.02 -1.05 16 40 H 0.04 1.51 7.92 -2.39 -0.02 1.49 16 41 H 0.06 1.87 7.13 -2.38 -0.02 1.85 16 Total: -1.00 -93.33 340.10 3.74 -89.60 By element: Atomic # 1 Polarization: 9.02 SS G_CDS: 0.36 Total: 9.38 kcal Atomic # 6 Polarization: -3.71 SS G_CDS: 6.41 Total: 2.70 kcal Atomic # 7 Polarization: -124.92 SS G_CDS: -5.01 Total: -129.93 kcal Atomic # 8 Polarization: -19.80 SS G_CDS: -0.05 Total: -19.85 kcal Atomic # 14 Polarization: 46.07 SS G_CDS: 2.03 Total: 48.10 kcal Total: -93.33 3.74 -89.60 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001026193021.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 171.211 kcal (2) G-P(sol) polarization free energy of solvation -93.334 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 77.877 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.738 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -89.596 kcal (6) G-S(sol) free energy of system = (1) + (5) 81.615 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds