Wall clock time and date at job start Tue Mar 31 2020 04:07:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86798 * 119.99669 * 2 1 4 4 H 1.48506 * 109.47297 * 239.99806 * 3 2 1 5 5 H 1.48503 * 109.47261 * 119.99987 * 3 2 1 6 6 H 1.48500 * 109.47454 * 359.97438 * 3 2 1 7 7 C 1.38809 * 120.00319 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00400 * 179.97438 * 7 2 1 9 9 N 1.36943 * 119.99902 * 0.02562 * 7 2 1 10 10 C 1.46500 * 119.99878 * 179.97438 * 9 7 2 11 11 H 1.09000 * 110.43999 * 36.10323 * 10 9 7 12 12 C 1.55942 * 110.48953 * 273.54366 * 10 9 7 13 13 C 1.56406 * 105.78643 * 233.78984 * 12 10 9 14 14 C 1.50992 * 101.59292 * 334.98490 * 13 12 10 15 15 H 1.08997 * 110.04532 * 291.25364 * 14 13 12 16 16 C 1.50342 * 125.58605 * 156.03868 * 14 13 12 17 17 N 1.49213 * 104.86302 * 215.65577 * 16 14 13 18 18 C 1.34773 * 126.06165 * 187.04355 * 17 16 14 19 19 O 1.21273 * 120.00331 * 180.02562 * 18 17 16 20 20 C 1.50700 * 119.99652 * 0.02569 * 18 17 16 21 21 H 1.09001 * 115.51327 * 34.42182 * 20 18 17 22 22 C 1.53003 * 117.43196 * 179.78797 * 20 18 17 23 23 H 1.09004 * 119.80822 * 354.35042 * 22 20 18 24 24 C 1.54480 * 118.06979 * 198.08590 * 22 20 18 25 25 O 1.44424 * 104.80234 * 321.13351 * 24 22 20 26 26 C 1.44430 * 105.27442 * 319.48253 * 25 24 22 27 27 C 1.53001 * 117.43549 * 249.04149 * 20 18 17 28 28 H 1.09004 * 119.80238 * 4.64600 * 27 20 18 29 29 C 1.49700 * 107.88004 * 7.06952 * 17 16 14 30 30 C 1.50299 * 110.49076 * 158.80957 * 10 9 7 31 31 H 1.09000 * 110.00194 * 38.17417 * 30 10 9 32 32 H 0.97001 * 119.99542 * 179.97438 * 1 2 3 33 33 H 0.97000 * 119.99707 * 0.02562 * 9 7 2 34 34 H 1.09000 * 110.19086 * 352.87100 * 12 10 9 35 35 H 1.08998 * 110.19002 * 114.63777 * 12 10 9 36 36 H 1.09007 * 111.00172 * 93.05754 * 13 12 10 37 37 H 1.09002 * 111.00752 * 216.86513 * 13 12 10 38 38 H 1.08996 * 110.36138 * 334.50694 * 16 14 13 39 39 H 1.09006 * 110.35825 * 96.81163 * 16 14 13 40 40 H 1.09002 * 110.37085 * 79.95640 * 24 22 20 41 41 H 1.08998 * 110.37420 * 202.18578 * 24 22 20 42 42 H 1.08997 * 110.37183 * 159.34248 * 26 25 24 43 43 H 1.08998 * 110.37389 * 281.68604 * 26 25 24 44 44 H 1.09000 * 110.84334 * 143.33037 * 29 17 16 45 45 H 1.09003 * 110.83841 * 266.93657 * 29 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.1039 1.6965 -1.2125 5 1 3.1039 1.6965 1.2125 6 1 1.2851 2.7465 -0.0006 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2021 0.0001 9 7 1.3256 -2.3881 0.0005 10 6 2.0582 -3.6568 0.0005 11 1 2.9632 -3.5737 0.6024 12 6 2.4094 -4.0843 -1.4574 13 6 1.8554 -5.5379 -1.6197 14 6 1.8463 -6.0207 -0.1890 15 1 2.8680 -6.1398 0.1715 16 6 0.9753 -7.1167 0.3590 17 7 0.6371 -6.6799 1.7451 18 6 -0.0174 -7.4101 2.6696 19 8 -0.2354 -6.9438 3.7677 20 6 -0.4785 -8.8062 2.3387 21 1 0.1740 -9.3706 1.6725 22 6 -1.2114 -9.5844 3.4333 23 1 -1.2994 -9.1601 4.4335 24 6 -1.3149 -11.1190 3.2890 25 8 -1.5411 -11.3427 1.8803 26 6 -2.4648 -10.3093 1.4744 27 6 -1.9854 -9.0400 2.2142 28 1 -2.6724 -8.1970 2.2888 29 6 1.1532 -5.2864 1.9267 30 6 1.1845 -4.7688 0.5094 31 1 0.1649 -4.6373 0.1473 32 1 -0.4849 -0.8401 -0.0004 33 1 0.3556 -2.3881 -0.0002 34 1 1.9279 -3.4164 -2.1717 35 1 3.4896 -4.0739 -1.6027 36 1 0.8475 -5.5279 -2.0349 37 1 2.5222 -6.1441 -2.2330 38 1 0.0694 -7.2160 -0.2390 39 1 1.5214 -8.0598 0.3812 40 1 -0.3854 -11.5932 3.6040 41 1 -2.1517 -11.4996 3.8746 42 1 -2.4186 -10.1615 0.3954 43 1 -3.4791 -10.5655 1.7801 44 1 0.4714 -4.6972 2.5399 45 1 2.1542 -5.2968 2.3581 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001026334607.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:07:35 Heat of formation + Delta-G solvation = -35.359217 kcal Electronic energy + Delta-G solvation = -25466.341997 eV Core-core repulsion = 21870.689216 eV Total energy + Delta-G solvation = -3595.652781 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 306.173 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -42.08473 -41.28995 -39.59952 -37.04276 -35.41940 -35.34862 -32.61784 -31.14027 -29.80603 -29.69648 -27.61206 -26.69810 -25.07716 -24.57570 -22.45229 -21.73260 -21.50831 -20.68813 -20.09458 -19.32186 -18.55258 -17.79701 -17.09902 -16.80990 -16.53439 -16.39486 -16.00459 -15.83892 -15.67389 -15.37874 -15.08111 -14.75491 -14.35701 -14.11407 -13.72939 -13.53932 -13.25043 -13.07663 -12.85612 -12.81514 -12.62555 -12.58550 -12.43203 -12.29803 -11.90943 -11.74087 -11.52072 -11.44765 -11.37925 -11.30536 -11.06863 -11.01008 -10.90978 -10.62383 -9.86392 -9.11865 -8.39507 -5.33225 1.24330 1.56695 1.59497 1.66920 1.82884 2.47686 2.70282 2.78406 2.91220 3.39083 3.40118 3.51799 3.55792 3.61650 3.77694 3.80803 3.90281 3.97955 4.11896 4.17747 4.25043 4.34491 4.41242 4.46848 4.49233 4.58361 4.59631 4.65501 4.67173 4.74706 4.78897 4.83117 4.83518 4.84432 4.89856 5.03053 5.07876 5.14696 5.26288 5.43337 5.46177 5.63305 5.71013 6.34489 6.48341 6.94490 7.08760 7.98800 8.10942 9.12289 Molecular weight = 306.17amu Principal moments of inertia in cm(-1) A = 0.025451 B = 0.002912 C = 0.002772 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1099.870273 B = 9613.785197 C =10098.108603 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.978 5.978 2 C -0.108 4.108 3 Si 1.126 2.874 4 H -0.275 1.275 5 H -0.280 1.280 6 H -0.295 1.295 7 C -0.326 4.326 8 H 0.068 0.932 9 N -0.747 5.747 10 C 0.191 3.809 11 H 0.046 0.954 12 C -0.137 4.137 13 C -0.082 4.082 14 C -0.105 4.105 15 H 0.092 0.908 16 C 0.125 3.875 17 N -0.618 5.618 18 C 0.553 3.447 19 O -0.590 6.590 20 C -0.143 4.143 21 H 0.143 0.857 22 C -0.171 4.171 23 H 0.122 0.878 24 C 0.077 3.923 25 O -0.388 6.388 26 C 0.077 3.923 27 C -0.167 4.167 28 H 0.121 0.879 29 C 0.130 3.870 30 C -0.121 4.121 31 H 0.064 0.936 32 H 0.242 0.758 33 H 0.357 0.643 34 H 0.044 0.956 35 H 0.067 0.933 36 H 0.068 0.932 37 H 0.097 0.903 38 H 0.085 0.915 39 H 0.106 0.894 40 H 0.109 0.891 41 H 0.093 0.907 42 H 0.113 0.887 43 H 0.092 0.908 44 H 0.048 0.952 45 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.013 -25.884 -0.270 25.886 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.626 5.626 2 C -0.298 4.298 3 Si 0.951 3.049 4 H -0.201 1.201 5 H -0.206 1.206 6 H -0.221 1.221 7 C -0.457 4.457 8 H 0.086 0.914 9 N -0.388 5.388 10 C 0.083 3.917 11 H 0.064 0.936 12 C -0.178 4.178 13 C -0.120 4.120 14 C -0.124 4.124 15 H 0.110 0.890 16 C 0.004 3.996 17 N -0.351 5.351 18 C 0.343 3.657 19 O -0.471 6.471 20 C -0.164 4.164 21 H 0.161 0.839 22 C -0.190 4.190 23 H 0.140 0.860 24 C 0.000 4.000 25 O -0.307 6.307 26 C 0.001 3.999 27 C -0.186 4.186 28 H 0.139 0.861 29 C 0.008 3.992 30 C -0.142 4.142 31 H 0.082 0.918 32 H 0.053 0.947 33 H 0.189 0.811 34 H 0.063 0.937 35 H 0.086 0.914 36 H 0.087 0.913 37 H 0.115 0.885 38 H 0.104 0.896 39 H 0.124 0.876 40 H 0.127 0.873 41 H 0.111 0.889 42 H 0.131 0.869 43 H 0.110 0.890 44 H 0.066 0.934 45 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 0.022 -24.223 0.241 24.224 hybrid contribution -0.403 -0.577 0.498 0.862 sum -0.382 -24.801 0.739 24.814 Atomic orbital electron populations 1.70999 1.07258 1.27750 1.56617 1.27166 0.97096 1.04709 1.00867 0.82649 0.73387 0.71713 0.77160 1.20117 1.20578 1.22132 1.20373 0.92303 0.87007 1.46051 0.91448 1.42726 1.04421 1.01879 1.89819 1.20310 0.93380 0.83279 0.94780 0.93638 1.23582 1.00653 0.96325 0.97198 1.21653 1.02022 0.94301 0.94011 1.22164 1.00060 0.92841 0.97344 0.88952 1.21482 0.99855 0.97904 0.80334 1.49804 1.55878 1.14913 1.14544 1.19763 0.76540 0.86630 0.82776 1.90685 1.58703 1.73430 1.24259 1.21946 0.97031 0.92558 1.04829 0.83901 1.24067 1.03441 0.96181 0.95296 0.86045 1.23088 1.03494 0.90600 0.82786 1.89159 1.65310 1.51807 1.24411 1.23113 0.93623 0.82331 1.00819 1.24098 0.91646 1.01476 1.01377 0.86112 1.21344 0.98980 0.81994 0.96839 1.22254 1.00162 0.96920 0.94815 0.91775 0.94738 0.81101 0.93717 0.91376 0.91339 0.88491 0.89633 0.87606 0.87336 0.88928 0.86911 0.88982 0.93356 0.90642 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.98 -62.28 13.70 21.65 0.30 -61.98 16 2 C -0.11 -6.31 5.50 84.86 0.47 -5.85 16 3 Si 1.13 52.53 29.92 68.60 2.05 54.58 16 4 H -0.28 -11.81 7.11 99.48 0.71 -11.10 16 5 H -0.28 -12.19 7.11 99.48 0.71 -11.48 16 6 H -0.30 -14.16 7.11 99.48 0.71 -13.45 16 7 C -0.33 -18.31 9.97 84.03 0.84 -17.48 16 8 H 0.07 3.68 7.83 -2.91 -0.02 3.65 16 9 N -0.75 -37.54 5.12 -322.25 -1.65 -39.19 16 10 C 0.19 7.30 3.39 45.14 0.15 7.45 16 11 H 0.05 1.81 8.11 -2.39 -0.02 1.79 16 12 C -0.14 -4.34 6.74 32.80 0.22 -4.12 16 13 C -0.08 -1.78 6.72 31.13 0.21 -1.57 16 14 C -0.10 -2.26 2.77 -10.57 -0.03 -2.29 16 15 H 0.09 1.89 8.14 -2.39 -0.02 1.87 16 16 C 0.12 2.31 6.30 84.99 0.54 2.85 16 17 N -0.62 -16.50 3.43 -815.10 -2.79 -19.29 16 18 C 0.55 15.88 7.66 87.66 0.67 16.55 16 19 O -0.59 -22.25 16.68 -3.01 -0.05 -22.30 16 20 C -0.14 -2.86 4.94 -11.54 -0.06 -2.92 16 21 H 0.14 2.33 7.50 -2.39 -0.02 2.31 16 22 C -0.17 -3.08 6.68 -9.84 -0.07 -3.14 16 23 H 0.12 2.56 7.82 -2.39 -0.02 2.54 16 24 C 0.08 0.99 7.53 72.49 0.55 1.54 16 25 O -0.39 -6.04 11.31 -148.98 -1.69 -7.72 16 26 C 0.08 0.95 7.54 72.51 0.55 1.50 16 27 C -0.17 -2.83 6.94 -9.82 -0.07 -2.90 16 28 H 0.12 2.26 8.14 -2.38 -0.02 2.24 16 29 C 0.13 4.19 6.81 85.08 0.58 4.77 16 30 C -0.12 -3.83 2.40 -10.61 -0.03 -3.86 16 31 H 0.06 2.24 7.92 -2.39 -0.02 2.22 16 32 H 0.24 15.42 6.77 -92.71 -0.63 14.80 16 33 H 0.36 19.08 6.47 -92.71 -0.60 18.48 16 34 H 0.04 1.68 7.98 -2.39 -0.02 1.66 16 35 H 0.07 1.98 8.14 -2.39 -0.02 1.96 16 36 H 0.07 1.50 8.14 -2.38 -0.02 1.48 16 37 H 0.10 1.55 8.14 -2.39 -0.02 1.53 16 38 H 0.09 1.42 8.14 -2.39 -0.02 1.40 16 39 H 0.11 1.37 7.82 -2.38 -0.02 1.35 16 40 H 0.11 1.16 8.14 -2.39 -0.02 1.14 16 41 H 0.09 0.88 8.14 -2.39 -0.02 0.86 16 42 H 0.11 1.09 8.14 -2.39 -0.02 1.07 16 43 H 0.09 0.84 8.14 -2.39 -0.02 0.82 16 44 H 0.05 1.85 8.09 -2.39 -0.02 1.83 16 45 H 0.08 2.34 8.14 -2.39 -0.02 2.32 16 Total: -1.00 -75.30 359.23 1.22 -74.08 By element: Atomic # 1 Polarization: 30.76 SS G_CDS: 0.52 Total: 31.28 kcal Atomic # 6 Polarization: -13.99 SS G_CDS: 4.52 Total: -9.46 kcal Atomic # 7 Polarization: -116.32 SS G_CDS: -4.15 Total: -120.47 kcal Atomic # 8 Polarization: -28.28 SS G_CDS: -1.74 Total: -30.02 kcal Atomic # 14 Polarization: 52.53 SS G_CDS: 2.05 Total: 54.58 kcal Total: -75.30 1.22 -74.08 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001026334607.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.724 kcal (2) G-P(sol) polarization free energy of solvation -75.300 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.576 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.217 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.084 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.359 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds