Wall clock time and date at job start Tue Mar 31 2020 03:46:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.35467 * 117.00045 * 2 1 4 4 N 1.32431 * 119.11430 * 359.72484 * 3 2 1 5 5 C 1.32126 * 120.97711 * 179.76162 * 4 3 2 6 6 C 1.38812 * 119.21819 * 0.50640 * 5 4 3 7 7 C 1.39461 * 118.38825 * 359.75102 * 6 5 4 8 8 C 1.48453 * 120.51482 * 180.02562 * 7 6 5 9 9 O 1.21475 * 120.00154 * 359.97438 * 8 7 6 10 10 N 1.34782 * 120.00056 * 179.97438 * 8 7 6 11 11 C 1.46493 * 120.00045 * 180.02562 * 10 8 7 12 12 C 1.53005 * 109.47200 * 180.02562 * 11 10 8 13 13 H 1.09003 * 110.63980 * 305.70276 * 12 11 10 14 14 C 1.55155 * 110.72347 * 182.56042 * 12 11 10 15 15 C 1.54910 * 101.58191 * 206.13198 * 14 12 11 16 16 N 1.47428 * 104.83315 * 37.01210 * 15 14 12 17 17 C 1.36931 * 125.65299 * 155.90329 * 16 15 14 18 18 H 1.07994 * 120.00039 * 179.97438 * 17 16 15 19 19 C 1.38809 * 119.99932 * 359.97438 * 17 16 15 20 20 N 1.31629 * 119.99969 * 359.97438 * 19 17 16 21 21 Si 1.86797 * 120.00262 * 179.97438 * 19 17 16 22 22 H 1.48492 * 109.47289 * 59.99922 * 21 19 17 23 23 H 1.48504 * 109.47225 * 180.02562 * 21 19 17 24 24 H 1.48500 * 109.47059 * 299.99665 * 21 19 17 25 25 C 1.47327 * 108.73188 * 335.71360 * 16 15 14 26 26 N 1.32078 * 119.11897 * 179.97438 * 3 2 1 27 27 H 1.09001 * 109.47103 * 179.97438 * 1 2 3 28 28 H 1.09000 * 109.47187 * 300.00344 * 1 2 3 29 29 H 1.09001 * 109.46558 * 60.00391 * 1 2 3 30 30 H 1.07992 * 120.39406 * 180.25469 * 5 4 3 31 31 H 1.07996 * 120.80327 * 179.77569 * 6 5 4 32 32 H 0.97002 * 119.99799 * 0.02562 * 10 8 7 33 33 H 1.09005 * 109.47366 * 299.99835 * 11 10 8 34 34 H 1.08993 * 109.47260 * 60.00583 * 11 10 8 35 35 H 1.09004 * 111.00229 * 324.20433 * 14 12 11 36 36 H 1.09002 * 111.00557 * 88.02018 * 14 12 11 37 37 H 1.09001 * 110.36259 * 155.84187 * 15 14 12 38 38 H 1.08995 * 110.36856 * 278.05805 * 15 14 12 39 39 H 0.96995 * 120.00159 * 180.02562 * 20 19 17 40 40 H 1.09008 * 110.05962 * 241.87347 * 25 16 15 41 41 H 1.09000 * 109.84985 * 120.61739 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0441 1.2070 0.0000 4 7 1.3057 2.3064 -0.0056 5 6 1.8670 3.5025 -0.0010 6 6 3.2516 3.6013 -0.0010 7 6 4.0003 2.4247 -0.0005 8 6 5.4840 2.4754 0.0001 9 8 6.0551 3.5475 -0.0003 10 7 6.1973 1.3318 0.0012 11 6 7.6614 1.3818 0.0023 12 6 8.2203 -0.0425 0.0027 13 1 7.8059 -0.6177 0.8307 14 6 9.7704 -0.0240 0.0688 15 6 10.1266 -1.3715 -0.6072 16 7 9.1344 -1.5261 -1.6866 17 6 9.2977 -2.2785 -2.8190 18 1 8.5073 -2.3276 -3.5533 19 6 10.4791 -2.9780 -3.0232 20 7 11.4427 -2.9176 -2.1285 21 14 10.7017 -4.0049 -4.5676 22 1 10.5909 -3.1312 -5.7632 23 1 12.0402 -4.6478 -4.5460 24 1 9.6507 -5.0527 -4.6210 25 6 7.9359 -0.7410 -1.3436 26 7 3.3639 1.2558 0.0005 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3633 0.5139 0.8899 29 1 -0.3632 0.5138 -0.8901 30 1 1.2558 4.3928 -0.0015 31 1 3.7372 4.5660 -0.0010 32 1 5.7412 0.4757 0.0012 33 1 8.0078 1.9074 -0.8876 34 1 8.0063 1.9080 0.8924 35 1 10.1755 0.8157 -0.4961 36 1 10.1172 -0.0008 1.1019 37 1 11.1343 -1.3335 -1.0210 38 1 10.0417 -2.1891 0.1085 39 1 12.2684 -3.4061 -2.2713 40 1 7.0731 -1.3998 -1.2445 41 1 7.7485 0.0049 -2.1160 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001028680940.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:46:22 Heat of formation + Delta-G solvation = 15.125231 kcal Electronic energy + Delta-G solvation = -24364.513769 eV Core-core repulsion = 20667.509815 eV Total energy + Delta-G solvation = -3697.003955 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 306.148 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.71502 -39.76976 -38.49708 -37.59938 -34.86939 -34.26111 -32.46188 -31.85848 -29.84110 -28.40069 -27.87796 -26.20551 -25.18356 -24.22990 -23.24221 -21.21083 -20.16304 -19.78485 -18.90120 -18.48112 -17.19953 -16.81972 -16.76711 -16.01029 -15.81586 -15.52931 -14.94178 -14.92390 -14.58556 -14.47184 -14.08623 -13.79173 -13.54948 -12.88078 -12.48005 -12.41255 -11.77583 -11.75734 -11.70783 -11.60048 -11.49068 -11.23399 -10.93623 -10.77687 -10.67516 -10.32896 -10.11777 -10.00191 -9.80182 -9.63998 -9.48265 -9.46553 -9.05468 -8.62410 -6.80929 -5.62909 -3.04356 0.14779 0.60219 2.10599 2.54691 2.90643 3.42632 3.46529 3.47932 3.48073 3.54916 4.10331 4.26474 4.51097 4.56287 4.83550 4.84995 4.89382 5.07464 5.19731 5.25330 5.26843 5.42208 5.54148 5.59720 5.69443 5.88187 6.03776 6.09499 6.16508 6.34237 6.36780 6.58874 6.59650 6.69961 6.74165 6.92893 7.35471 7.53593 7.60127 7.64711 7.87661 7.99818 8.38785 9.24801 9.85420 10.50500 11.41105 Molecular weight = 306.15amu Principal moments of inertia in cm(-1) A = 0.017128 B = 0.002945 C = 0.002642 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1634.355699 B = 9503.939299 C =10594.483635 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.044 3.956 2 O -0.286 6.286 3 C 0.500 3.500 4 N -0.557 5.557 5 C 0.189 3.811 6 C -0.212 4.212 7 C 0.177 3.823 8 C 0.567 3.433 9 O -0.525 6.525 10 N -0.696 5.696 11 C 0.129 3.871 12 C -0.115 4.115 13 H 0.078 0.922 14 C -0.134 4.134 15 C 0.152 3.848 16 N -0.605 5.605 17 C -0.222 4.222 18 H 0.076 0.924 19 C -0.012 4.012 20 N -0.923 5.923 21 Si 0.915 3.085 22 H -0.285 1.285 23 H -0.290 1.290 24 H -0.286 1.286 25 C 0.140 3.860 26 N -0.501 5.501 27 H 0.106 0.894 28 H 0.063 0.937 29 H 0.064 0.936 30 H 0.182 0.818 31 H 0.165 0.835 32 H 0.415 0.585 33 H 0.075 0.925 34 H 0.071 0.929 35 H 0.063 0.937 36 H 0.061 0.939 37 H 0.107 0.893 38 H 0.012 0.988 39 H 0.252 0.748 40 H 0.021 0.979 41 H 0.025 0.975 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.146 12.135 7.474 24.677 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.051 4.051 2 O -0.186 6.186 3 C 0.198 3.802 4 N -0.286 5.286 5 C 0.022 3.978 6 C -0.235 4.235 7 C 0.028 3.972 8 C 0.350 3.650 9 O -0.401 6.401 10 N -0.347 5.347 11 C 0.006 3.994 12 C -0.135 4.135 13 H 0.096 0.904 14 C -0.174 4.174 15 C 0.027 3.973 16 N -0.331 5.331 17 C -0.351 4.351 18 H 0.094 0.906 19 C -0.207 4.207 20 N -0.572 5.572 21 Si 0.745 3.255 22 H -0.212 1.212 23 H -0.216 1.216 24 H -0.212 1.212 25 C 0.014 3.986 26 N -0.229 5.229 27 H 0.124 0.876 28 H 0.082 0.918 29 H 0.082 0.918 30 H 0.199 0.801 31 H 0.183 0.817 32 H 0.251 0.749 33 H 0.093 0.907 34 H 0.089 0.911 35 H 0.082 0.918 36 H 0.079 0.921 37 H 0.125 0.875 38 H 0.030 0.970 39 H 0.063 0.937 40 H 0.039 0.961 41 H 0.043 0.957 Dipole moment (debyes) X Y Z Total from point charges -19.917 11.493 7.360 24.144 hybrid contribution -0.118 -0.173 -0.762 0.791 sum -20.035 11.320 6.597 23.939 Atomic orbital electron populations 1.23039 0.75396 1.03863 1.02829 1.86149 1.23525 1.22173 1.86795 1.20557 0.85631 0.85001 0.89056 1.68017 1.41615 0.99424 1.19582 1.23093 0.92227 0.94475 0.87975 1.22815 0.95550 1.01132 1.04046 1.21556 0.95152 0.88005 0.92458 1.17687 0.84489 0.84836 0.78031 1.90806 1.70100 1.29052 1.50122 1.46011 1.08141 1.08951 1.71550 1.21620 0.77267 0.97973 1.02526 1.22461 0.98016 0.93615 0.99391 0.90379 1.23007 0.92414 1.01739 1.00201 1.21928 0.97186 0.89594 0.88560 1.44568 1.12462 1.55096 1.20945 1.19043 0.99983 1.20357 0.95681 0.90588 1.24781 0.96572 1.00704 0.98660 1.69784 1.06535 1.46232 1.34669 0.86145 0.76930 0.79963 0.82424 1.21174 1.21573 1.21239 1.21401 0.91064 0.93540 0.92619 1.67444 1.08384 1.29296 1.17807 0.87608 0.91820 0.91771 0.80127 0.81710 0.74867 0.90676 0.91074 0.91780 0.92055 0.87505 0.97014 0.93698 0.96100 0.95741 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.31 10.36 101.05 1.05 1.35 16 2 O -0.29 -3.25 10.56 -18.09 -0.19 -3.44 16 3 C 0.50 6.04 8.48 -91.36 -0.77 5.27 16 4 N -0.56 -5.54 9.20 -14.74 -0.14 -5.67 16 5 C 0.19 1.44 11.30 -17.21 -0.19 1.24 16 6 C -0.21 -1.97 9.71 -38.91 -0.38 -2.34 16 7 C 0.18 2.18 6.79 -82.66 -0.56 1.62 16 8 C 0.57 7.99 7.83 -12.05 -0.09 7.89 16 9 O -0.53 -8.43 16.42 5.39 0.09 -8.35 16 10 N -0.70 -9.72 5.42 -61.06 -0.33 -10.05 16 11 C 0.13 1.90 5.00 -4.04 -0.02 1.88 16 12 C -0.12 -1.95 2.98 -88.78 -0.26 -2.21 16 13 H 0.08 1.25 8.14 -51.93 -0.42 0.82 16 14 C -0.13 -2.48 6.54 -24.58 -0.16 -2.64 16 15 C 0.15 3.69 5.89 -2.53 -0.01 3.67 16 16 N -0.60 -15.65 3.40 -169.83 -0.58 -16.23 16 17 C -0.22 -6.29 10.28 -15.06 -0.15 -6.45 16 18 H 0.08 2.08 7.83 -52.49 -0.41 1.67 16 19 C -0.01 -0.34 5.49 -17.43 -0.10 -0.43 16 20 N -0.92 -27.11 10.09 55.49 0.56 -26.55 16 21 Si 0.91 22.32 29.55 -169.99 -5.02 17.30 16 22 H -0.29 -6.86 7.11 56.52 0.40 -6.45 16 23 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 24 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 25 C 0.14 2.91 6.67 -2.90 -0.02 2.89 16 26 N -0.50 -6.59 9.73 -11.29 -0.11 -6.70 16 27 H 0.11 0.49 8.14 -51.93 -0.42 0.06 16 28 H 0.06 0.39 8.09 -51.93 -0.42 -0.03 16 29 H 0.06 0.41 8.09 -51.93 -0.42 -0.01 16 30 H 0.18 0.59 8.06 -52.49 -0.42 0.17 16 31 H 0.17 1.28 7.73 -52.49 -0.41 0.87 16 32 H 0.41 5.63 7.79 -40.82 -0.32 5.32 16 33 H 0.07 1.19 8.00 -51.93 -0.42 0.77 16 34 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 35 H 0.06 1.17 8.05 -51.93 -0.42 0.75 16 36 H 0.06 0.99 8.14 -51.93 -0.42 0.56 16 37 H 0.11 2.92 5.87 -51.93 -0.31 2.61 16 38 H 0.01 0.30 8.14 -51.93 -0.42 -0.12 16 39 H 0.25 7.19 8.31 -40.82 -0.34 6.85 16 40 H 0.02 0.44 8.14 -51.92 -0.42 0.01 16 41 H 0.02 0.52 7.73 -51.93 -0.40 0.12 16 LS Contribution 347.39 15.07 5.24 5.24 Total: -1.00 -33.56 347.39 -7.78 -41.34 By element: Atomic # 1 Polarization: 6.99 SS G_CDS: -5.61 Total: 1.38 kcal Atomic # 6 Polarization: 13.42 SS G_CDS: -1.69 Total: 11.73 kcal Atomic # 7 Polarization: -64.61 SS G_CDS: -0.59 Total: -65.20 kcal Atomic # 8 Polarization: -11.68 SS G_CDS: -0.10 Total: -11.78 kcal Atomic # 14 Polarization: 22.32 SS G_CDS: -5.02 Total: 17.30 kcal Total LS contribution 5.24 Total: 5.24 kcal Total: -33.56 -7.78 -41.34 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001028680940.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.465 kcal (2) G-P(sol) polarization free energy of solvation -33.559 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.906 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.780 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.339 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.125 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds