Wall clock time and date at job start Tue Mar 31 2020 03:41:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.34778 * 119.99743 * 2 1 4 4 O 1.21617 * 119.99744 * 185.18147 * 3 2 1 5 5 C 1.47292 * 119.99878 * 5.18412 * 3 2 1 6 6 C 1.37934 * 125.89525 * 173.58941 * 5 3 2 7 7 C 1.39448 * 107.45854 * 179.84281 * 6 5 3 8 8 C 1.37930 * 107.46227 * 0.42055 * 7 6 5 9 9 C 1.47297 * 125.90251 * 179.72267 * 8 7 6 10 10 N 1.34772 * 119.99992 * 180.02562 * 9 8 7 11 11 O 1.21608 * 119.99614 * 0.02562 * 9 8 7 12 12 N 1.36756 * 125.90267 * 353.90077 * 5 3 2 13 13 H 0.97000 * 125.65759 * 359.96246 * 12 5 3 14 14 C 1.46500 * 120.00000 * 179.97438 * 2 1 3 15 15 H 1.09001 * 110.91665 * 189.49711 * 14 2 1 16 16 C 1.55165 * 111.00163 * 65.60224 * 14 2 1 17 17 C 1.54329 * 103.09777 * 277.51202 * 16 14 2 18 18 N 1.47018 * 107.27071 * 337.71854 * 17 16 14 19 19 C 1.36941 * 125.64135 * 178.90411 * 18 17 16 20 20 H 1.08006 * 119.99358 * 180.02562 * 19 18 17 21 21 C 1.38807 * 120.00468 * 0.02893 * 19 18 17 22 22 N 1.31622 * 119.99600 * 359.97438 * 21 19 18 23 23 Si 1.86800 * 120.00005 * 180.02562 * 21 19 18 24 24 H 1.48494 * 109.47239 * 359.97438 * 23 21 19 25 25 H 1.48493 * 109.47180 * 119.99894 * 23 21 19 26 26 H 1.48501 * 109.46704 * 239.99578 * 23 21 19 27 27 C 1.47416 * 108.70671 * 358.94179 * 18 17 16 28 28 H 1.08999 * 109.46993 * 179.76492 * 1 2 3 29 29 H 1.08999 * 109.47361 * 299.76323 * 1 2 3 30 30 H 1.08996 * 109.47157 * 59.76967 * 1 2 3 31 31 H 1.07998 * 126.27308 * 359.97438 * 6 5 3 32 32 H 1.08001 * 126.26979 * 180.16006 * 7 6 5 33 33 H 0.97006 * 120.00223 * 359.97438 * 10 9 8 34 34 H 0.96998 * 119.99922 * 179.97438 * 10 9 8 35 35 H 1.09001 * 110.71790 * 159.06294 * 16 14 2 36 36 H 1.09000 * 110.72169 * 35.96692 * 16 14 2 37 37 H 1.09003 * 109.87689 * 97.13715 * 17 16 14 38 38 H 1.08998 * 109.87817 * 218.14234 * 17 16 14 39 39 H 0.97001 * 119.99679 * 180.02562 * 22 21 19 40 40 H 1.09002 * 110.36734 * 142.96539 * 27 18 17 41 41 H 1.08997 * 110.36834 * 265.28976 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 3.3513 1.1694 -0.0951 5 6 1.4068 2.4402 0.1153 6 6 1.9743 3.6898 0.2526 7 6 0.9343 4.6161 0.3233 8 6 -0.2506 3.9154 0.2375 9 6 -1.6031 4.4975 0.2762 10 7 -2.6839 3.6977 0.1826 11 8 -1.7445 5.6997 0.3926 12 7 0.0471 2.5866 0.1106 13 1 -0.5988 1.8674 0.0300 14 6 2.1975 -1.2687 0.0006 15 1 3.2618 -1.1035 0.1685 16 6 1.9574 -2.0501 -1.3183 17 6 0.6110 -2.7602 -1.0639 18 7 0.4320 -2.8477 0.3927 19 6 -0.6495 -3.3919 1.0326 20 1 -0.6865 -3.4080 2.1119 21 6 -1.6981 -3.9228 0.2942 22 7 -1.6531 -3.9027 -1.0211 23 14 -3.1736 -4.6645 1.1671 24 1 -2.9816 -4.5642 2.6362 25 1 -4.4020 -3.9272 0.7765 26 1 -3.3100 -6.0924 0.7825 27 6 1.6092 -2.2517 1.0503 28 1 -0.3633 -1.0277 -0.0042 29 1 -0.3634 0.5101 0.8921 30 1 -0.3633 0.5174 -0.8879 31 1 3.0306 3.9107 0.2953 32 1 1.0376 5.6858 0.4303 33 1 -2.5711 2.7388 0.0893 34 1 -3.5745 4.0810 0.2084 35 1 2.7516 -2.7777 -1.4855 36 1 1.8790 -1.3659 -2.1631 37 1 -0.2018 -2.1819 -1.5032 38 1 0.6314 -3.7598 -1.4980 39 1 -2.3860 -4.2734 -1.5372 40 1 1.3092 -1.7119 1.9485 41 1 2.3378 -3.0241 1.2965 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001033425513.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:41:10 Heat of formation + Delta-G solvation = 27.976673 kcal Electronic energy + Delta-G solvation = -25764.160494 eV Core-core repulsion = 22067.713820 eV Total energy + Delta-G solvation = -3696.446674 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 306.148 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.76284 -39.75609 -38.85939 -37.52065 -34.65740 -34.05572 -32.52515 -31.14825 -29.90825 -29.26894 -27.97501 -26.55612 -24.83309 -23.81334 -22.03533 -20.83695 -20.24546 -20.00097 -19.64144 -18.20026 -17.26938 -17.12444 -16.91335 -16.12458 -15.70886 -15.01773 -14.84014 -14.78052 -14.37727 -14.07908 -13.94001 -13.67144 -13.19544 -13.00333 -12.79810 -12.69626 -12.36523 -12.15682 -11.90733 -11.74229 -11.10964 -11.05887 -10.93337 -10.62784 -10.42324 -10.27239 -10.11291 -10.06824 -9.85128 -9.71739 -9.22943 -8.87961 -8.59516 -8.32646 -7.06117 -5.94280 -3.30227 0.93629 2.08635 2.71553 3.09958 3.15645 3.20742 3.23738 3.31885 3.33280 3.35630 4.29898 4.47952 4.63154 5.10631 5.14292 5.15251 5.18557 5.26847 5.30316 5.46213 5.53702 5.72203 5.78225 5.95875 6.00394 6.17140 6.23909 6.32311 6.39575 6.42992 6.46991 6.51682 6.66628 6.81911 6.94883 7.10550 7.34227 7.38646 7.52931 7.61644 7.89462 8.00211 8.18781 8.98508 9.57410 10.21847 11.16218 Molecular weight = 306.15amu Principal moments of inertia in cm(-1) A = 0.013721 B = 0.004620 C = 0.003650 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2040.223553 B = 6058.629806 C = 7669.508972 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 N -0.584 5.584 3 C 0.580 3.420 4 O -0.531 6.531 5 C 0.003 3.997 6 C -0.131 4.131 7 C -0.117 4.117 8 C -0.038 4.038 9 C 0.595 3.405 10 N -0.854 5.854 11 O -0.530 6.530 12 N -0.524 5.524 13 H 0.423 0.577 14 C 0.123 3.877 15 H 0.104 0.896 16 C -0.156 4.156 17 C 0.171 3.829 18 N -0.603 5.603 19 C -0.236 4.236 20 H 0.080 0.920 21 C -0.003 4.003 22 N -0.919 5.919 23 Si 0.911 3.089 24 H -0.279 1.279 25 H -0.290 1.290 26 H -0.289 1.289 27 C 0.124 3.876 28 H 0.156 0.844 29 H 0.050 0.950 30 H 0.048 0.952 31 H 0.156 0.844 32 H 0.154 0.846 33 H 0.398 0.602 34 H 0.409 0.591 35 H 0.071 0.929 36 H 0.063 0.937 37 H 0.049 0.951 38 H 0.046 0.954 39 H 0.254 0.746 40 H 0.046 0.954 41 H 0.037 0.963 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.485 10.702 0.757 10.831 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 N -0.315 5.315 3 C 0.368 3.632 4 O -0.408 6.408 5 C -0.115 4.115 6 C -0.157 4.157 7 C -0.144 4.144 8 C -0.155 4.155 9 C 0.381 3.619 10 N -0.417 5.417 11 O -0.406 6.406 12 N -0.130 5.130 13 H 0.272 0.728 14 C 0.020 3.980 15 H 0.122 0.878 16 C -0.196 4.196 17 C 0.047 3.953 18 N -0.330 5.330 19 C -0.364 4.364 20 H 0.098 0.902 21 C -0.200 4.200 22 N -0.566 5.566 23 Si 0.741 3.259 24 H -0.205 1.205 25 H -0.217 1.217 26 H -0.216 1.216 27 C -0.003 4.003 28 H 0.173 0.827 29 H 0.069 0.931 30 H 0.067 0.933 31 H 0.173 0.827 32 H 0.172 0.828 33 H 0.226 0.774 34 H 0.241 0.759 35 H 0.089 0.911 36 H 0.082 0.918 37 H 0.068 0.932 38 H 0.064 0.936 39 H 0.064 0.936 40 H 0.064 0.936 41 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges 1.857 11.201 0.713 11.377 hybrid contribution -1.622 -1.213 0.263 2.043 sum 0.235 9.988 0.976 10.039 Atomic orbital electron populations 1.22714 0.79884 1.10351 0.98102 1.47601 1.07013 1.05396 1.71476 1.17314 0.86726 0.81995 0.77202 1.90793 1.12731 1.86493 1.50785 1.20735 0.82160 0.95996 1.12612 1.21267 0.99932 0.89512 1.04950 1.21270 0.89487 0.99875 1.03758 1.20542 0.94866 0.83901 1.16226 1.17169 0.82978 0.86112 0.75646 1.43752 1.09294 1.11111 1.77568 1.90862 1.85963 1.13890 1.49854 1.43311 1.07532 1.07908 1.54299 0.72847 1.22426 0.96181 0.81949 0.97492 0.87835 1.23282 1.00969 0.99037 0.96264 1.21260 0.90945 0.98621 0.84501 1.44682 1.17517 1.69293 1.01558 1.19108 0.94037 1.32326 0.90958 0.90210 1.24807 0.98739 1.00860 0.95618 1.69975 1.32494 1.50365 1.03728 0.86067 0.82343 0.78874 0.78596 1.20457 1.21694 1.21625 1.21998 0.90576 0.93401 0.94276 0.82677 0.93131 0.93344 0.82662 0.82817 0.77365 0.75879 0.91076 0.91789 0.93249 0.93605 0.93564 0.93560 0.94576 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.48 7.62 59.85 0.46 0.93 16 2 N -0.58 -9.24 2.91 -172.50 -0.50 -9.74 16 3 C 0.58 9.36 7.66 -12.58 -0.10 9.26 16 4 O -0.53 -9.84 16.31 5.26 0.09 -9.75 16 5 C 0.00 0.05 6.78 -82.10 -0.56 -0.51 16 6 C -0.13 -1.69 10.61 -39.24 -0.42 -2.11 16 7 C -0.12 -1.44 10.60 -39.24 -0.42 -1.86 16 8 C -0.04 -0.47 7.04 -82.10 -0.58 -1.04 16 9 C 0.60 7.11 8.08 -12.58 -0.10 7.01 16 10 N -0.85 -6.94 8.87 30.40 0.27 -6.67 16 11 O -0.53 -8.04 17.71 5.27 0.09 -7.95 16 12 N -0.52 -6.17 5.16 -5.89 -0.03 -6.20 16 13 H 0.42 4.35 3.62 -40.82 -0.15 4.20 16 14 C 0.12 2.07 3.65 -65.52 -0.24 1.83 16 15 H 0.10 1.71 7.11 -51.93 -0.37 1.34 16 16 C -0.16 -2.70 6.53 -24.89 -0.16 -2.86 16 17 C 0.17 3.62 4.31 -3.06 -0.01 3.61 16 18 N -0.60 -13.20 1.92 -169.78 -0.33 -13.52 16 19 C -0.24 -5.75 9.93 -15.06 -0.15 -5.90 16 20 H 0.08 1.91 7.83 -52.48 -0.41 1.50 16 21 C 0.00 -0.08 5.49 -17.43 -0.10 -0.18 16 22 N -0.92 -23.99 10.31 55.49 0.57 -23.42 16 23 Si 0.91 19.99 29.55 -169.99 -5.02 14.97 16 24 H -0.28 -6.01 7.11 56.52 0.40 -5.61 16 25 H -0.29 -6.38 7.11 56.52 0.40 -5.98 16 26 H -0.29 -6.56 7.11 56.52 0.40 -6.16 16 27 C 0.12 2.29 6.42 -2.28 -0.01 2.28 16 28 H 0.16 2.87 3.48 -51.93 -0.18 2.68 16 29 H 0.05 0.65 6.65 -51.93 -0.35 0.30 16 30 H 0.05 0.62 6.89 -51.93 -0.36 0.26 16 31 H 0.16 1.83 8.06 -52.49 -0.42 1.41 16 32 H 0.15 1.67 8.06 -52.49 -0.42 1.25 16 33 H 0.40 2.53 7.93 -40.82 -0.32 2.21 16 34 H 0.41 2.69 8.93 -40.82 -0.36 2.32 16 35 H 0.07 1.15 8.14 -51.93 -0.42 0.73 16 36 H 0.06 1.07 8.14 -51.93 -0.42 0.64 16 37 H 0.05 1.12 6.37 -51.93 -0.33 0.79 16 38 H 0.05 1.11 7.51 -51.93 -0.39 0.72 16 39 H 0.25 6.53 8.31 -40.82 -0.34 6.19 16 40 H 0.05 0.85 8.14 -51.93 -0.42 0.42 16 41 H 0.04 0.66 8.14 -51.93 -0.42 0.24 16 LS Contribution 332.09 15.07 5.00 5.00 Total: -1.00 -30.22 332.09 -7.13 -37.35 By element: Atomic # 1 Polarization: 14.37 SS G_CDS: -4.89 Total: 9.47 kcal Atomic # 6 Polarization: 12.84 SS G_CDS: -2.38 Total: 10.46 kcal Atomic # 7 Polarization: -59.54 SS G_CDS: -0.02 Total: -59.56 kcal Atomic # 8 Polarization: -17.88 SS G_CDS: 0.18 Total: -17.70 kcal Atomic # 14 Polarization: 19.99 SS G_CDS: -5.02 Total: 14.97 kcal Total LS contribution 5.00 Total: 5.00 kcal Total: -30.22 -7.13 -37.35 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001033425513.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.330 kcal (2) G-P(sol) polarization free energy of solvation -30.221 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.109 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.132 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.353 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.977 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds