Wall clock time and date at job start Tue Mar 31 2020 03:51:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31612 * 1 3 3 Si 1.86802 * 120.00407 * 2 1 4 4 H 1.48500 * 109.47165 * 180.02562 * 3 2 1 5 5 H 1.48500 * 109.46887 * 300.00095 * 3 2 1 6 6 H 1.48497 * 109.47264 * 59.99855 * 3 2 1 7 7 C 1.38813 * 119.99892 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00343 * 180.02562 * 7 2 1 9 9 N 1.36937 * 120.00023 * 359.97438 * 7 2 1 10 10 C 1.48158 * 126.40247 * 0.03089 * 9 7 2 11 11 C 1.55297 * 107.04112 * 184.91645 * 10 9 7 12 12 C 1.53737 * 101.84236 * 22.47878 * 11 10 9 13 13 H 1.09007 * 111.30829 * 79.83802 * 12 11 10 14 14 C 1.52240 * 114.74909 * 207.23629 * 12 11 10 15 15 N 1.47724 * 106.35831 * 169.60174 * 14 12 11 16 16 C 1.34773 * 119.68327 * 127.94420 * 15 14 12 17 17 O 1.21286 * 120.00392 * 359.97438 * 16 15 14 18 18 C 1.50700 * 120.00067 * 179.97438 * 16 15 14 19 19 N 1.46500 * 109.47287 * 179.97438 * 18 16 15 20 20 C 1.34602 * 126.43670 * 125.00607 * 19 18 16 21 21 N 1.31066 * 106.67727 * 180.24572 * 20 19 18 22 22 N 1.28842 * 107.99355 * 359.62850 * 21 20 19 23 23 N 1.28740 * 109.39538 * 0.38110 * 22 21 20 24 24 C 1.46598 * 120.62966 * 308.21484 * 15 14 12 25 25 C 1.53539 * 110.81341 * 47.46041 * 24 15 14 26 26 C 1.45466 * 126.40479 * 180.02562 * 9 7 2 27 27 H 1.09000 * 109.27355 * 266.21958 * 26 9 7 28 28 H 0.97000 * 120.00000 * 359.97438 * 1 2 3 29 29 H 1.08992 * 109.92580 * 65.56970 * 10 9 7 30 30 H 1.08999 * 109.91946 * 304.25822 * 10 9 7 31 31 H 1.08996 * 110.95187 * 264.34035 * 11 10 9 32 32 H 1.09004 * 110.95057 * 140.61030 * 11 10 9 33 33 H 1.09001 * 110.07038 * 50.39503 * 14 12 11 34 34 H 1.09004 * 110.07077 * 288.80872 * 14 12 11 35 35 H 1.09004 * 109.47094 * 59.99749 * 18 16 15 36 36 H 1.08999 * 109.47316 * 300.00363 * 18 16 15 37 37 H 1.08002 * 126.65847 * 359.97438 * 20 19 18 38 38 H 1.08999 * 109.25266 * 167.82539 * 24 15 14 39 39 H 1.08994 * 109.25633 * 287.26343 * 24 15 14 40 40 H 1.09003 * 109.96007 * 189.66314 * 25 24 15 41 41 H 1.08997 * 109.72252 * 68.63351 * 25 24 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7102 1.3462 -0.0006 5 1 1.8915 2.3964 -1.2125 6 1 1.8916 2.3964 1.2124 7 6 2.0102 -1.2022 0.0005 8 1 3.0902 -1.2023 0.0010 9 7 1.3255 -2.3881 0.0016 10 6 -0.1469 -2.5533 0.0016 11 6 -0.4342 -4.0740 0.1303 12 6 0.8681 -4.5886 0.7648 13 1 0.8849 -4.4048 1.8392 14 6 1.2006 -6.0403 0.4492 15 7 2.5820 -6.2631 0.9229 16 6 2.8481 -7.3014 1.7399 17 8 1.9554 -8.0472 2.0833 18 6 4.2548 -7.5358 2.2269 19 7 4.2810 -8.7160 3.0945 20 6 5.0648 -9.8002 2.9458 21 7 4.7682 -10.6161 3.9277 22 7 3.8559 -10.0587 4.6467 23 7 3.5570 -8.9117 4.1442 24 6 3.6651 -5.3623 0.5173 25 6 3.2473 -3.8949 0.6891 26 6 1.9077 -3.7211 0.0028 27 1 1.9895 -4.0789 -1.0236 28 1 -0.4850 0.8400 0.0004 29 1 -0.5632 -2.1744 -0.9317 30 1 -0.5803 -2.0206 0.8481 31 1 -0.5952 -4.5244 -0.8491 32 1 -1.2857 -4.2556 0.7862 33 1 1.1414 -6.2125 -0.6255 34 1 0.5136 -6.7041 0.9741 35 1 4.5949 -6.6653 2.7880 36 1 4.9128 -7.6973 1.3731 37 1 5.7931 -9.9673 2.1661 38 1 4.5446 -5.5588 1.1305 39 1 3.9098 -5.5426 -0.5294 40 1 3.9876 -3.2408 0.2282 41 1 3.1536 -3.6608 1.7495 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001036641113.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:51:51 Heat of formation + Delta-G solvation = 130.233570 kcal Electronic energy + Delta-G solvation = -25490.571912 eV Core-core repulsion = 21830.852180 eV Total energy + Delta-G solvation = -3659.719732 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 306.155 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -44.35525 -40.60172 -38.58765 -35.77447 -35.60179 -32.91662 -32.60399 -31.81040 -30.49554 -29.13256 -28.00254 -25.13358 -24.14908 -24.00094 -23.08428 -22.57398 -20.38167 -20.06586 -19.34943 -18.20617 -17.68724 -16.86197 -16.35290 -16.33374 -15.85536 -15.56648 -15.11431 -14.56333 -14.16538 -14.10973 -13.79709 -13.34372 -13.14841 -12.93742 -12.67965 -12.60686 -12.31078 -11.81060 -11.64749 -11.58222 -11.38974 -11.31472 -11.00588 -10.91558 -10.87167 -10.60706 -10.30312 -10.18973 -10.04493 -9.92748 -9.75071 -9.62722 -8.83859 -8.72520 -6.94962 -5.81451 -3.15488 1.02677 1.56227 2.09705 2.15162 2.67016 3.32253 3.36816 3.40440 3.71801 3.94197 3.96359 4.32009 4.39265 4.52778 4.68111 4.87018 5.01390 5.16334 5.18659 5.28485 5.40273 5.44181 5.46397 5.63075 5.71466 5.77843 5.84875 5.95665 5.99550 6.06649 6.13801 6.29508 6.46012 6.49802 6.64394 6.90719 7.06722 7.45069 7.51589 7.71538 7.75307 8.13922 8.43035 9.08727 9.72538 10.39770 11.30967 Molecular weight = 306.15amu Principal moments of inertia in cm(-1) A = 0.028045 B = 0.003146 C = 0.002970 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 998.167288 B = 8898.832377 C = 9425.474041 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.919 5.919 2 C -0.007 4.007 3 Si 0.910 3.090 4 H -0.280 1.280 5 H -0.290 1.290 6 H -0.290 1.290 7 C -0.229 4.229 8 H 0.079 0.921 9 N -0.594 5.594 10 C 0.177 3.823 11 C -0.136 4.136 12 C -0.125 4.125 13 H 0.081 0.919 14 C 0.128 3.872 15 N -0.598 5.598 16 C 0.500 3.500 17 O -0.517 6.517 18 C 0.094 3.906 19 N -0.299 5.299 20 C 0.157 3.843 21 N -0.309 5.309 22 N -0.081 5.081 23 N -0.060 5.060 24 C 0.106 3.894 25 C -0.132 4.132 26 C 0.168 3.832 27 H 0.020 0.980 28 H 0.253 0.747 29 H 0.039 0.961 30 H 0.055 0.945 31 H 0.059 0.941 32 H 0.062 0.938 33 H 0.073 0.927 34 H 0.091 0.909 35 H 0.137 0.863 36 H 0.143 0.857 37 H 0.235 0.765 38 H 0.076 0.924 39 H 0.074 0.926 40 H 0.081 0.919 41 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.822 -13.481 -0.997 17.316 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.566 5.566 2 C -0.203 4.203 3 Si 0.741 3.259 4 H -0.205 1.205 5 H -0.217 1.217 6 H -0.217 1.217 7 C -0.357 4.357 8 H 0.097 0.903 9 N -0.319 5.319 10 C 0.053 3.947 11 C -0.175 4.175 12 C -0.145 4.145 13 H 0.099 0.901 14 C 0.006 3.994 15 N -0.332 5.332 16 C 0.284 3.716 17 O -0.393 6.393 18 C -0.032 4.032 19 N -0.101 5.101 20 C -0.141 4.141 21 N -0.156 5.156 22 N -0.075 5.075 23 N -0.046 5.046 24 C -0.017 4.017 25 C -0.171 4.171 26 C 0.060 3.940 27 H 0.038 0.962 28 H 0.063 0.937 29 H 0.057 0.943 30 H 0.074 0.926 31 H 0.077 0.923 32 H 0.081 0.919 33 H 0.091 0.909 34 H 0.110 0.890 35 H 0.155 0.845 36 H 0.161 0.839 37 H 0.251 0.749 38 H 0.094 0.906 39 H 0.092 0.908 40 H 0.099 0.901 41 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 9.592 -14.018 0.329 16.989 hybrid contribution 0.990 1.531 -1.034 2.096 sum 10.582 -12.487 -0.705 16.383 Atomic orbital electron populations 1.69941 1.04933 1.25075 1.56682 1.24808 0.95681 0.97719 1.02116 0.86082 0.78659 0.83892 0.77306 1.20521 1.21742 1.21748 1.19010 0.90333 0.82248 1.44141 0.90304 1.44204 1.01669 0.99396 1.86600 1.21543 0.83873 0.88260 1.01072 1.22722 0.95725 0.99695 0.99352 1.22653 0.98112 0.92958 1.00811 0.90069 1.21721 0.80729 0.97552 0.99364 1.48289 1.10733 1.26747 1.47415 1.20078 0.89600 0.82175 0.79736 1.90832 1.46386 1.45935 1.56098 1.22157 0.99273 0.86673 0.95061 1.48218 1.25756 1.16445 1.19692 1.27719 0.99773 0.84352 1.02272 1.74973 1.11488 1.24911 1.04218 1.78684 1.08893 0.99709 1.20221 1.79054 1.13648 1.14600 0.97335 1.21841 0.88156 0.91059 1.00635 1.21846 0.99872 0.93016 1.02402 1.20611 0.90869 0.87434 0.95103 0.96229 0.93695 0.94269 0.92647 0.92275 0.91940 0.90863 0.89022 0.84541 0.83943 0.74908 0.90556 0.90824 0.90094 0.91175 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -25.92 10.44 55.49 0.58 -25.35 16 2 C -0.01 -0.18 5.49 -17.43 -0.10 -0.27 16 3 Si 0.91 21.01 29.55 -169.99 -5.02 15.98 16 4 H -0.28 -6.19 7.11 56.52 0.40 -5.78 16 5 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 6 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 7 C -0.23 -5.86 9.88 -15.06 -0.15 -6.00 16 8 H 0.08 1.91 7.21 -52.49 -0.38 1.53 16 9 N -0.59 -13.76 3.35 -163.09 -0.55 -14.31 16 10 C 0.18 4.02 5.45 -1.91 -0.01 4.01 16 11 C -0.14 -2.34 6.54 -25.13 -0.16 -2.51 16 12 C -0.12 -1.99 2.85 -89.37 -0.26 -2.24 16 13 H 0.08 1.43 8.14 -51.92 -0.42 1.01 16 14 C 0.13 1.67 5.96 -3.76 -0.02 1.65 16 15 N -0.60 -6.58 3.00 -172.74 -0.52 -7.10 16 16 C 0.50 5.64 7.69 -10.99 -0.08 5.55 16 17 O -0.52 -8.29 15.05 5.55 0.08 -8.20 16 18 C 0.09 0.61 5.30 -5.19 -0.03 0.58 16 19 N -0.30 -2.99 3.19 -63.74 -0.20 -3.19 16 20 C 0.16 1.29 12.79 -90.39 -1.16 0.14 16 21 N -0.31 -3.92 12.36 29.59 0.37 -3.55 16 22 N -0.08 -1.24 13.43 60.35 0.81 -0.42 16 23 N -0.06 -0.87 12.29 60.35 0.74 -0.13 16 24 C 0.11 0.94 6.18 -3.71 -0.02 0.91 16 25 C -0.13 -1.81 5.46 -27.20 -0.15 -1.95 16 26 C 0.17 2.95 2.57 -67.98 -0.17 2.77 16 27 H 0.02 0.36 7.92 -51.93 -0.41 -0.05 16 28 H 0.25 6.96 8.31 -40.82 -0.34 6.62 16 29 H 0.04 0.98 7.77 -51.93 -0.40 0.58 16 30 H 0.06 1.42 7.21 -51.93 -0.37 1.05 16 31 H 0.06 0.93 8.11 -51.93 -0.42 0.51 16 32 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 33 H 0.07 0.89 8.08 -51.93 -0.42 0.47 16 34 H 0.09 1.30 7.00 -51.93 -0.36 0.93 16 35 H 0.14 0.63 7.53 -51.93 -0.39 0.23 16 36 H 0.14 0.21 7.94 -51.93 -0.41 -0.20 16 37 H 0.23 0.47 8.06 -52.49 -0.42 0.04 16 38 H 0.08 0.38 5.84 -51.93 -0.30 0.08 16 39 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 40 H 0.08 1.12 7.62 -51.93 -0.40 0.73 16 41 H 0.07 1.04 8.13 -51.93 -0.42 0.62 16 LS Contribution 331.30 15.07 4.99 4.99 Total: -1.00 -35.84 331.30 -6.55 -42.39 By element: Atomic # 1 Polarization: 1.77 SS G_CDS: -5.52 Total: -3.75 kcal Atomic # 6 Polarization: 4.95 SS G_CDS: -2.31 Total: 2.63 kcal Atomic # 7 Polarization: -55.27 SS G_CDS: 1.23 Total: -54.04 kcal Atomic # 8 Polarization: -8.29 SS G_CDS: 0.08 Total: -8.20 kcal Atomic # 14 Polarization: 21.01 SS G_CDS: -5.02 Total: 15.98 kcal Total LS contribution 4.99 Total: 4.99 kcal Total: -35.84 -6.55 -42.39 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036641113.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 172.622 kcal (2) G-P(sol) polarization free energy of solvation -35.836 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 136.786 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.553 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.389 kcal (6) G-S(sol) free energy of system = (1) + (5) 130.234 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds