Wall clock time and date at job start Tue Mar 31 2020 03:52:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86800 * 120.00050 * 2 1 4 4 H 1.48500 * 109.47084 * 180.02562 * 3 2 1 5 5 H 1.48503 * 109.47257 * 299.99969 * 3 2 1 6 6 H 1.48496 * 109.47145 * 60.00117 * 3 2 1 7 7 C 1.38809 * 119.99772 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99967 * 180.02562 * 7 2 1 9 9 N 1.36941 * 120.00337 * 359.97438 * 7 2 1 10 10 C 1.48162 * 126.39913 * 0.02562 * 9 7 2 11 11 C 1.55297 * 107.03805 * 184.88753 * 10 9 7 12 12 C 1.53738 * 101.84177 * 22.48464 * 11 10 9 13 13 H 1.08996 * 111.31137 * 78.95618 * 12 11 10 14 14 C 1.52238 * 114.74138 * 206.35565 * 12 11 10 15 15 N 1.47723 * 106.36871 * 169.56959 * 14 12 11 16 16 C 1.34781 * 119.67804 * 127.91428 * 15 14 12 17 17 O 1.21277 * 120.00508 * 0.02562 * 16 15 14 18 18 C 1.50706 * 119.99578 * 179.97438 * 16 15 14 19 19 N 1.46491 * 109.47211 * 180.02562 * 18 16 15 20 20 N 1.28886 * 125.45177 * 89.99819 * 19 18 16 21 21 C 1.31043 * 107.91959 * 180.02562 * 20 19 18 22 22 N 1.33322 * 106.89826 * 0.02562 * 21 20 19 23 23 N 1.28785 * 125.45034 * 269.70109 * 19 18 16 24 24 C 1.46596 * 120.63599 * 307.94557 * 15 14 12 25 25 C 1.53949 * 110.57403 * 47.82022 * 24 15 14 26 26 C 1.45460 * 126.40658 * 179.97438 * 9 7 2 27 27 H 1.08998 * 108.77024 * 266.00647 * 26 9 7 28 28 H 0.97001 * 119.99771 * 0.02562 * 1 2 3 29 29 H 1.08994 * 109.91851 * 65.54850 * 10 9 7 30 30 H 1.08996 * 109.92571 * 304.23419 * 10 9 7 31 31 H 1.09001 * 110.94886 * 140.61720 * 11 10 9 32 32 H 1.08999 * 110.95641 * 264.30658 * 11 10 9 33 33 H 1.08999 * 110.07052 * 288.78200 * 14 12 11 34 34 H 1.09002 * 110.07028 * 50.36433 * 14 12 11 35 35 H 1.09000 * 109.47534 * 300.00726 * 18 16 15 36 36 H 1.09003 * 109.46623 * 60.00589 * 18 16 15 37 37 H 1.07996 * 126.55016 * 180.02562 * 21 20 19 38 38 H 1.08997 * 109.25601 * 168.10572 * 24 15 14 39 39 H 1.09005 * 109.24940 * 287.57786 * 24 15 14 40 40 H 1.09004 * 109.88243 * 68.40744 * 25 24 15 41 41 H 1.09002 * 109.88338 * 189.48931 * 25 24 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7102 1.3463 -0.0006 5 1 1.8915 2.3965 -1.2125 6 1 1.8915 2.3964 1.2125 7 6 2.0102 -1.2022 -0.0005 8 1 3.0903 -1.2022 -0.0001 9 7 1.3255 -2.3881 -0.0005 10 6 -0.1469 -2.5533 -0.0005 11 6 -0.4342 -4.0742 0.1260 12 6 0.8682 -4.5896 0.7597 13 1 0.8918 -4.3935 1.8316 14 6 1.1898 -6.0470 0.4592 15 7 2.5725 -6.2733 0.9274 16 6 2.8365 -7.3035 1.7554 17 8 1.9411 -8.0395 2.1122 18 6 4.2446 -7.5413 2.2370 19 7 4.2683 -8.7118 3.1176 20 7 4.4591 -9.9288 2.7384 21 6 4.4117 -10.6943 3.8009 22 7 4.1837 -9.8958 4.8439 23 7 4.1073 -8.6889 4.3951 24 6 3.6601 -5.3878 0.5006 25 6 3.2516 -3.9124 0.6626 26 6 1.9077 -3.7211 -0.0016 27 1 1.9815 -4.0708 -1.0313 28 1 -0.4850 0.8401 -0.0004 29 1 -0.5632 -2.1731 -0.9334 30 1 -0.5803 -2.0218 0.8466 31 1 -1.2856 -4.2568 0.7816 32 1 -0.5959 -4.5232 -0.8540 33 1 0.5017 -6.7002 0.9956 34 1 1.1233 -6.2313 -0.6131 35 1 4.8964 -7.7174 1.3814 36 1 4.5935 -6.6664 2.7856 37 1 4.5339 -11.7670 3.8267 38 1 4.5435 -5.5850 1.1078 39 1 3.8926 -5.5830 -0.5463 40 1 3.1655 -3.6656 1.7209 41 1 3.9933 -3.2683 0.1900 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001036717229.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:52:04 Heat of formation + Delta-G solvation = 138.907401 kcal Electronic energy + Delta-G solvation = -25483.892947 eV Core-core repulsion = 21824.549341 eV Total energy + Delta-G solvation = -3659.343606 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 306.155 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -44.49723 -40.56867 -38.54476 -35.67675 -35.19335 -33.27060 -32.82901 -31.78884 -30.49058 -29.15358 -28.01411 -25.13860 -24.15053 -24.04739 -22.97788 -22.54579 -20.38469 -20.07927 -19.34437 -18.29104 -17.76554 -16.77800 -16.34444 -16.10514 -15.83267 -15.26300 -15.09203 -14.52177 -14.14059 -14.06823 -13.89809 -13.63948 -13.12189 -13.00964 -12.68506 -12.59434 -12.15805 -11.79088 -11.62621 -11.56105 -11.32213 -11.15353 -10.99125 -10.89979 -10.84889 -10.80063 -10.28273 -10.17751 -10.01677 -9.88574 -9.73718 -9.61705 -8.82690 -8.70754 -6.92974 -5.79770 -3.13716 0.99220 1.53951 2.08428 2.17135 2.72401 3.33870 3.38697 3.41977 3.83045 3.88613 4.17349 4.36683 4.40640 4.64260 4.73633 4.87527 5.04235 5.17559 5.31606 5.42164 5.46313 5.50434 5.55071 5.64832 5.73346 5.81717 5.87211 5.97634 6.02635 6.09155 6.16242 6.31732 6.48101 6.51448 6.66576 6.92852 7.07639 7.46867 7.52959 7.72944 7.74707 8.15552 8.18030 9.10479 9.74233 10.41437 11.32670 Molecular weight = 306.15amu Principal moments of inertia in cm(-1) A = 0.027855 B = 0.003156 C = 0.002982 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1004.956454 B = 8869.777157 C = 9388.604587 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.920 5.920 2 C -0.007 4.007 3 Si 0.910 3.090 4 H -0.280 1.280 5 H -0.291 1.291 6 H -0.291 1.291 7 C -0.229 4.229 8 H 0.079 0.921 9 N -0.594 5.594 10 C 0.177 3.823 11 C -0.136 4.136 12 C -0.125 4.125 13 H 0.080 0.920 14 C 0.128 3.872 15 N -0.596 5.596 16 C 0.503 3.497 17 O -0.528 6.528 18 C 0.109 3.891 19 N -0.125 5.125 20 N -0.303 5.303 21 C 0.143 3.857 22 N -0.287 5.287 23 N -0.048 5.048 24 C 0.106 3.894 25 C -0.132 4.132 26 C 0.169 3.831 27 H 0.019 0.981 28 H 0.252 0.748 29 H 0.039 0.961 30 H 0.055 0.945 31 H 0.061 0.939 32 H 0.059 0.941 33 H 0.091 0.909 34 H 0.074 0.926 35 H 0.146 0.854 36 H 0.148 0.852 37 H 0.236 0.764 38 H 0.078 0.922 39 H 0.075 0.925 40 H 0.070 0.930 41 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.238 -15.837 1.253 18.377 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.567 5.567 2 C -0.204 4.204 3 Si 0.741 3.259 4 H -0.205 1.205 5 H -0.218 1.218 6 H -0.218 1.218 7 C -0.357 4.357 8 H 0.097 0.903 9 N -0.318 5.318 10 C 0.053 3.947 11 C -0.175 4.175 12 C -0.146 4.146 13 H 0.099 0.901 14 C 0.007 3.993 15 N -0.330 5.330 16 C 0.287 3.713 17 O -0.404 6.404 18 C -0.016 4.016 19 N -0.036 5.036 20 N -0.152 5.152 21 C -0.160 4.160 22 N -0.158 5.158 23 N -0.042 5.042 24 C -0.017 4.017 25 C -0.171 4.171 26 C 0.060 3.940 27 H 0.036 0.964 28 H 0.063 0.937 29 H 0.058 0.942 30 H 0.073 0.927 31 H 0.080 0.920 32 H 0.078 0.922 33 H 0.110 0.890 34 H 0.092 0.908 35 H 0.163 0.837 36 H 0.166 0.834 37 H 0.252 0.748 38 H 0.096 0.904 39 H 0.094 0.906 40 H 0.089 0.911 41 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 8.617 -15.332 1.618 17.662 hybrid contribution 0.522 0.493 -0.293 0.776 sum 9.139 -14.839 1.325 17.478 Atomic orbital electron populations 1.69946 1.04930 1.25057 1.56754 1.24808 0.95687 0.97719 1.02137 0.86077 0.78681 0.83874 0.77288 1.20503 1.21753 1.21755 1.19022 0.90355 0.82246 1.44058 0.90285 1.44198 1.01659 0.99362 1.86608 1.21539 0.83835 0.88243 1.01084 1.22719 0.95685 0.99708 0.99361 1.22645 0.98176 0.92876 1.00895 0.90143 1.21710 0.80643 0.97385 0.99548 1.48276 1.10575 1.27593 1.46511 1.20154 0.89542 0.81847 0.79721 1.90793 1.46545 1.46301 1.56767 1.22162 0.99035 0.85086 0.95290 1.49543 1.42482 1.06173 1.05430 1.74691 1.20932 0.91047 1.28566 1.27336 1.01899 1.02865 0.83896 1.75887 1.17693 0.95363 1.26825 1.79028 1.14475 1.17320 0.93361 1.21938 0.88030 0.91087 1.00642 1.21822 0.99796 0.92943 1.02571 1.20485 0.90858 0.87411 0.95249 0.96420 0.93713 0.94240 0.92653 0.91975 0.92248 0.89040 0.90772 0.83675 0.83396 0.74821 0.90394 0.90648 0.91147 0.90063 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.11 10.44 55.49 0.58 -25.53 16 2 C -0.01 -0.19 5.49 -17.43 -0.10 -0.28 16 3 Si 0.91 21.19 29.55 -169.99 -5.02 16.17 16 4 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 5 H -0.29 -6.87 7.11 56.52 0.40 -6.46 16 6 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 7 C -0.23 -5.91 9.91 -15.06 -0.15 -6.06 16 8 H 0.08 1.94 7.28 -52.48 -0.38 1.56 16 9 N -0.59 -13.93 3.35 -163.31 -0.55 -14.47 16 10 C 0.18 4.07 5.45 -1.91 -0.01 4.06 16 11 C -0.14 -2.37 6.53 -25.13 -0.16 -2.53 16 12 C -0.13 -2.04 2.82 -89.36 -0.25 -2.29 16 13 H 0.08 1.44 8.14 -51.93 -0.42 1.02 16 14 C 0.13 1.75 5.99 -3.76 -0.02 1.72 16 15 N -0.60 -7.08 3.00 -172.49 -0.52 -7.59 16 16 C 0.50 6.28 7.74 -10.98 -0.09 6.19 16 17 O -0.53 -8.92 15.79 5.56 0.09 -8.83 16 18 C 0.11 0.95 5.41 -5.20 -0.03 0.92 16 19 N -0.12 -1.50 3.49 -11.72 -0.04 -1.55 16 20 N -0.30 -3.59 12.13 29.34 0.36 -3.23 16 21 C 0.14 1.50 13.26 -91.57 -1.21 0.28 16 22 N -0.29 -3.80 12.50 29.33 0.37 -3.44 16 23 N -0.05 -0.66 13.25 60.35 0.80 0.14 16 24 C 0.11 1.03 6.24 -3.50 -0.02 1.01 16 25 C -0.13 -1.87 5.46 -27.18 -0.15 -2.02 16 26 C 0.17 3.02 2.55 -68.17 -0.17 2.85 16 27 H 0.02 0.34 8.00 -51.93 -0.42 -0.08 16 28 H 0.25 6.99 8.31 -40.82 -0.34 6.65 16 29 H 0.04 1.00 7.77 -51.93 -0.40 0.60 16 30 H 0.06 1.43 7.21 -51.93 -0.37 1.06 16 31 H 0.06 1.01 8.14 -51.93 -0.42 0.58 16 32 H 0.06 0.95 8.12 -51.93 -0.42 0.53 16 33 H 0.09 1.33 6.99 -51.93 -0.36 0.97 16 34 H 0.07 0.94 8.12 -51.93 -0.42 0.51 16 35 H 0.15 0.76 7.99 -51.93 -0.41 0.34 16 36 H 0.15 0.89 7.54 -51.93 -0.39 0.50 16 37 H 0.24 1.27 8.06 -52.49 -0.42 0.84 16 38 H 0.08 0.47 5.83 -51.93 -0.30 0.17 16 39 H 0.08 0.65 8.14 -51.93 -0.42 0.22 16 40 H 0.07 1.07 8.13 -51.93 -0.42 0.65 16 41 H 0.08 1.16 7.70 -51.93 -0.40 0.76 16 LS Contribution 333.16 15.07 5.02 5.02 Total: -1.00 -34.56 333.16 -6.82 -41.38 By element: Atomic # 1 Polarization: 3.62 SS G_CDS: -5.54 Total: -1.92 kcal Atomic # 6 Polarization: 6.22 SS G_CDS: -2.37 Total: 3.85 kcal Atomic # 7 Polarization: -56.67 SS G_CDS: 1.00 Total: -55.67 kcal Atomic # 8 Polarization: -8.92 SS G_CDS: 0.09 Total: -8.83 kcal Atomic # 14 Polarization: 21.19 SS G_CDS: -5.02 Total: 16.17 kcal Total LS contribution 5.02 Total: 5.02 kcal Total: -34.56 -6.82 -41.38 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036717229.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 180.287 kcal (2) G-P(sol) polarization free energy of solvation -34.555 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 145.732 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.825 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.380 kcal (6) G-S(sol) free energy of system = (1) + (5) 138.907 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds