Wall clock time and date at job start Tue Mar 31 2020 04:08:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86795 * 120.00032 * 2 1 4 4 H 1.48501 * 109.47065 * 269.99590 * 3 2 1 5 5 H 1.48502 * 109.47659 * 29.99079 * 3 2 1 6 6 H 1.48504 * 109.47271 * 149.99735 * 3 2 1 7 7 C 1.38812 * 119.99914 * 179.97438 * 2 1 3 8 8 H 1.07994 * 119.99845 * 180.02562 * 7 2 1 9 9 N 1.36936 * 119.99806 * 0.02562 * 7 2 1 10 10 C 1.47136 * 125.61086 * 0.02562 * 9 7 2 11 11 C 1.54578 * 107.33006 * 180.67199 * 10 9 7 12 12 C 1.53706 * 102.78192 * 20.87887 * 11 10 9 13 13 C 1.52880 * 111.74950 * 205.63841 * 12 11 10 14 14 C 1.54763 * 104.40687 * 237.39495 * 13 12 11 15 15 N 1.48271 * 104.67399 * 23.64658 * 14 13 12 16 16 C 1.34777 * 127.72142 * 141.26079 * 15 14 13 17 17 O 1.21291 * 119.99908 * 180.02562 * 16 15 14 18 18 C 1.50693 * 120.00087 * 0.03512 * 16 15 14 19 19 C 1.53005 * 119.80435 * 248.97187 * 18 16 15 20 20 C 1.54510 * 122.36819 * 176.59545 * 18 16 15 21 21 H 1.08997 * 122.36605 * 359.44125 * 20 18 16 22 22 C 1.54481 * 104.06104 * 223.21372 * 20 18 16 23 23 O 1.44422 * 104.80199 * 336.01809 * 22 20 18 24 24 C 1.44423 * 105.27695 * 40.51495 * 23 22 20 25 25 C 1.48494 * 104.55781 * 321.28969 * 15 14 13 26 26 C 1.47714 * 125.60340 * 179.71323 * 9 7 2 27 27 H 0.97003 * 120.00071 * 0.02562 * 1 2 3 28 28 H 1.09008 * 109.87044 * 300.10817 * 10 9 7 29 29 H 1.09001 * 109.87149 * 61.23164 * 10 9 7 30 30 H 1.09004 * 110.74759 * 139.20035 * 11 10 9 31 31 H 1.08998 * 110.75053 * 262.55275 * 11 10 9 32 32 H 1.08990 * 110.45052 * 356.12628 * 13 12 11 33 33 H 1.09006 * 110.44482 * 118.67061 * 13 12 11 34 34 H 1.09001 * 110.39847 * 142.44514 * 14 13 12 35 35 H 1.09004 * 110.39750 * 264.73604 * 14 13 12 36 36 H 1.08995 * 117.43127 * 355.36454 * 19 18 16 37 37 H 1.09000 * 117.42992 * 140.00988 * 19 18 16 38 38 H 1.08997 * 110.37060 * 217.18409 * 22 20 18 39 39 H 1.09001 * 110.46868 * 94.89926 * 22 20 18 40 40 H 1.09005 * 110.37244 * 200.65236 * 24 23 22 41 41 H 1.09005 * 110.46689 * 78.36457 * 24 23 22 42 42 H 1.09000 * 110.47050 * 279.55249 * 25 15 14 43 43 H 1.08997 * 110.47400 * 156.94672 * 25 15 14 44 44 H 1.09001 * 110.38617 * 276.46932 * 26 9 7 45 45 H 1.08998 * 110.39055 * 38.85355 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4978 2.0463 -1.4001 5 1 1.4476 2.6528 0.6998 6 1 3.5477 1.4402 0.7001 7 6 2.0102 -1.2022 0.0005 8 1 3.0902 -1.2021 0.0010 9 7 1.3255 -2.3880 0.0005 10 6 -0.1388 -2.5318 -0.0005 11 6 -0.4529 -4.0452 0.0172 12 6 0.8483 -4.6562 0.5614 13 6 1.0308 -6.1026 0.1011 14 6 1.1564 -6.9117 1.4144 15 7 0.4820 -6.0757 2.4365 16 6 -0.3028 -6.4877 3.4519 17 8 -0.7872 -5.6760 4.2118 18 6 -0.5781 -7.9569 3.6431 19 6 -1.9826 -8.5071 3.3867 20 6 -1.4054 -8.4956 4.8317 21 1 -1.8236 -7.8406 5.5959 22 6 -0.6146 -9.7339 5.3087 23 8 0.1442 -10.1544 4.1542 24 6 0.6146 -8.9335 3.5426 25 6 0.8639 -4.6830 2.0909 26 6 1.9355 -3.7333 -0.0049 27 1 -0.4850 0.8401 -0.0004 28 1 -0.5585 -2.0558 0.8858 29 1 -0.5551 -2.0774 -0.8996 30 1 -1.2882 -4.2585 0.6843 31 1 -0.6588 -4.4088 -0.9895 32 1 0.1624 -6.4335 -0.4683 33 1 1.9382 -6.2009 -0.4949 34 1 0.6528 -7.8735 1.3178 35 1 2.2055 -7.0572 1.6721 36 1 -2.7663 -7.7896 3.1438 37 1 -2.0601 -9.4732 2.8880 38 1 -1.2982 -10.5232 5.6216 39 1 0.0550 -9.4669 6.1263 40 1 0.8754 -9.1080 2.4987 41 1 1.4734 -8.5408 4.0870 42 1 1.8621 -4.4572 2.4660 43 1 0.1363 -3.9774 2.4920 44 1 2.1932 -4.0292 -1.0219 45 1 2.8195 -3.7520 0.6325 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001041303203.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:08:34 Heat of formation + Delta-G solvation = -2.874249 kcal Electronic energy + Delta-G solvation = -26202.224276 eV Core-core repulsion = 22607.980148 eV Total energy + Delta-G solvation = -3594.244127 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 306.173 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.10383 -39.73450 -38.07695 -35.73120 -34.52855 -32.69196 -30.61900 -29.55181 -29.09291 -28.00583 -26.28521 -25.76213 -24.59753 -22.55711 -21.92362 -21.08234 -20.23226 -19.09079 -18.71365 -17.43357 -16.72059 -16.34186 -15.95806 -15.87427 -15.32954 -14.96479 -14.66238 -14.19083 -13.87957 -13.78415 -13.62006 -13.17258 -13.13991 -12.95869 -12.33009 -12.21732 -12.06145 -11.91547 -11.79982 -11.46914 -11.35212 -11.22148 -10.85568 -10.82225 -10.77838 -10.48904 -10.19383 -10.01175 -9.99161 -9.93386 -9.79783 -9.67946 -9.59998 -8.64064 -8.58039 -6.82283 -5.69521 -3.03411 2.43057 2.83617 3.21523 3.41022 3.45903 3.48175 3.51869 4.13154 4.24556 4.33159 4.50582 4.56673 4.68930 4.76337 4.92956 4.98387 5.05873 5.15682 5.26645 5.30021 5.35114 5.39763 5.43383 5.49969 5.53280 5.54404 5.77411 5.82593 5.84253 5.90758 6.04145 6.06652 6.16743 6.30382 6.35145 6.35623 6.51260 6.61956 6.70790 6.80703 7.57143 7.60418 7.64239 7.84424 8.16877 8.26731 9.23011 9.83370 10.49177 11.41939 Molecular weight = 306.17amu Principal moments of inertia in cm(-1) A = 0.029932 B = 0.003252 C = 0.003160 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 935.215082 B = 8608.722039 C = 8858.846634 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.921 5.921 2 C -0.008 4.008 3 Si 0.911 3.089 4 H -0.289 1.289 5 H -0.291 1.291 6 H -0.281 1.281 7 C -0.229 4.229 8 H 0.077 0.923 9 N -0.605 5.605 10 C 0.178 3.822 11 C -0.130 4.130 12 C -0.086 4.086 13 C -0.119 4.119 14 C 0.095 3.905 15 N -0.616 5.616 16 C 0.577 3.423 17 O -0.537 6.537 18 C -0.207 4.207 19 C -0.102 4.102 20 C -0.166 4.166 21 H 0.134 0.866 22 C 0.070 3.930 23 O -0.370 6.370 24 C 0.081 3.919 25 C 0.131 3.869 26 C 0.151 3.849 27 H 0.252 0.748 28 H 0.045 0.955 29 H 0.042 0.958 30 H 0.058 0.942 31 H 0.059 0.941 32 H 0.074 0.926 33 H 0.082 0.918 34 H 0.079 0.921 35 H 0.072 0.928 36 H 0.111 0.889 37 H 0.108 0.892 38 H 0.100 0.900 39 H 0.072 0.928 40 H 0.104 0.896 41 H 0.071 0.929 42 H 0.073 0.927 43 H 0.087 0.913 44 H 0.023 0.977 45 H 0.040 0.960 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.674 -21.314 5.171 21.943 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.568 5.568 2 C -0.204 4.204 3 Si 0.742 3.258 4 H -0.217 1.217 5 H -0.217 1.217 6 H -0.207 1.207 7 C -0.357 4.357 8 H 0.095 0.905 9 N -0.332 5.332 10 C 0.053 3.947 11 C -0.168 4.168 12 C -0.087 4.087 13 C -0.158 4.158 14 C -0.027 4.027 15 N -0.349 5.349 16 C 0.365 3.635 17 O -0.414 6.414 18 C -0.211 4.211 19 C -0.139 4.139 20 C -0.185 4.185 21 H 0.152 0.848 22 C -0.006 4.006 23 O -0.288 6.288 24 C 0.005 3.995 25 C 0.009 3.991 26 C 0.024 3.976 27 H 0.062 0.938 28 H 0.063 0.937 29 H 0.061 0.939 30 H 0.077 0.923 31 H 0.077 0.923 32 H 0.092 0.908 33 H 0.100 0.900 34 H 0.097 0.903 35 H 0.091 0.909 36 H 0.129 0.871 37 H 0.126 0.874 38 H 0.118 0.882 39 H 0.090 0.910 40 H 0.121 0.879 41 H 0.090 0.910 42 H 0.091 0.909 43 H 0.106 0.894 44 H 0.041 0.959 45 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges -0.986 -20.877 5.622 21.643 hybrid contribution 0.473 1.298 -0.013 1.381 sum -0.513 -19.579 5.608 20.373 Atomic orbital electron populations 1.69969 1.04880 1.25008 1.56961 1.24801 0.95699 0.97663 1.02244 0.86131 0.78588 0.83591 0.77506 1.21657 1.21707 1.20709 1.19036 0.90393 0.82412 1.43903 0.90466 1.44578 1.01601 0.99771 1.87258 1.21214 0.84253 0.88160 1.01049 1.22796 0.95150 0.99530 0.99368 1.21631 0.98859 0.94143 0.94108 1.22408 1.02881 0.94405 0.96098 1.22673 0.97254 0.94774 0.88044 1.49062 1.48036 1.09662 1.28161 1.18567 0.77653 0.87686 0.79573 1.90737 1.51226 1.54932 1.44537 1.23107 0.94910 0.93951 1.09094 1.23301 0.92199 1.02495 0.95932 1.24604 1.02438 0.99593 0.91857 0.84791 1.22999 0.93308 0.95405 0.88924 1.89167 1.70666 1.27364 1.41601 1.23055 0.93671 0.83148 0.99661 1.22193 1.01006 0.81805 0.94047 1.21415 0.93418 0.85871 0.96884 0.93771 0.93660 0.93944 0.92319 0.92253 0.90769 0.89986 0.90299 0.90933 0.87088 0.87400 0.88176 0.90984 0.87851 0.91049 0.90908 0.89430 0.95916 0.94218 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -27.27 10.31 55.49 0.57 -26.70 16 2 C -0.01 -0.22 5.49 -17.43 -0.10 -0.32 16 3 Si 0.91 22.23 29.55 -169.99 -5.02 17.20 16 4 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 5 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 6 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 7 C -0.23 -6.34 10.28 -15.06 -0.15 -6.50 16 8 H 0.08 2.05 7.83 -52.49 -0.41 1.64 16 9 N -0.61 -15.17 3.41 -170.49 -0.58 -15.75 16 10 C 0.18 4.32 5.33 -2.87 -0.02 4.30 16 11 C -0.13 -2.41 5.67 -25.54 -0.14 -2.56 16 12 C -0.09 -1.40 0.81 -153.98 -0.12 -1.52 16 13 C -0.12 -1.42 6.32 -25.86 -0.16 -1.59 16 14 C 0.10 1.00 5.89 -2.14 -0.01 0.99 16 15 N -0.62 -8.76 3.33 -169.54 -0.56 -9.32 16 16 C 0.58 8.73 7.62 -10.99 -0.08 8.65 16 17 O -0.54 -10.37 17.13 5.55 0.10 -10.27 16 18 C -0.21 -2.32 2.32 -154.09 -0.36 -2.68 16 19 C -0.10 -0.98 9.84 -25.35 -0.25 -1.23 16 20 C -0.17 -1.64 7.04 -87.67 -0.62 -2.25 16 21 H 0.13 1.38 8.14 -51.93 -0.42 0.96 16 22 C 0.07 0.58 7.54 37.93 0.29 0.87 16 23 O -0.37 -3.71 11.32 -35.23 -0.40 -4.11 16 24 C 0.08 0.77 6.20 37.93 0.24 1.01 16 25 C 0.13 2.22 6.10 -2.95 -0.02 2.20 16 26 C 0.15 2.93 6.10 -3.14 -0.02 2.92 16 27 H 0.25 7.28 8.31 -40.82 -0.34 6.94 16 28 H 0.05 1.24 7.40 -51.92 -0.38 0.86 16 29 H 0.04 1.14 7.48 -51.93 -0.39 0.76 16 30 H 0.06 1.08 7.97 -51.93 -0.41 0.66 16 31 H 0.06 1.02 7.90 -51.93 -0.41 0.61 16 32 H 0.07 0.84 7.64 -51.93 -0.40 0.45 16 33 H 0.08 0.87 7.65 -51.93 -0.40 0.47 16 34 H 0.08 0.67 5.59 -51.93 -0.29 0.38 16 35 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 36 H 0.11 1.11 8.14 -51.93 -0.42 0.68 16 37 H 0.11 0.89 8.07 -51.93 -0.42 0.47 16 38 H 0.10 0.64 8.14 -51.93 -0.42 0.22 16 39 H 0.07 0.55 8.14 -51.93 -0.42 0.12 16 40 H 0.10 0.82 5.87 -51.93 -0.31 0.51 16 41 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 42 H 0.07 1.23 7.64 -51.93 -0.40 0.84 16 43 H 0.09 1.78 7.58 -51.93 -0.39 1.38 16 44 H 0.02 0.44 7.90 -51.93 -0.41 0.03 16 45 H 0.04 0.75 7.69 -51.93 -0.40 0.35 16 LS Contribution 350.28 15.07 5.28 5.28 Total: -1.00 -33.02 350.28 -9.24 -42.27 By element: Atomic # 1 Polarization: 6.21 SS G_CDS: -7.09 Total: -0.88 kcal Atomic # 6 Polarization: 3.82 SS G_CDS: -1.53 Total: 2.29 kcal Atomic # 7 Polarization: -51.20 SS G_CDS: -0.57 Total: -51.77 kcal Atomic # 8 Polarization: -14.08 SS G_CDS: -0.30 Total: -14.38 kcal Atomic # 14 Polarization: 22.23 SS G_CDS: -5.02 Total: 17.20 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -33.02 -9.24 -42.27 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001041303203.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.391 kcal (2) G-P(sol) polarization free energy of solvation -33.021 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.370 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.245 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.266 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.874 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds