Wall clock time and date at job start Tue Mar 31 2020 04:09:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86800 * 120.00028 * 2 1 4 4 H 1.48499 * 109.47007 * 240.00071 * 3 2 1 5 5 H 1.48499 * 109.47354 * 0.02562 * 3 2 1 6 6 H 1.48498 * 109.47193 * 120.00024 * 3 2 1 7 7 C 1.38806 * 120.00008 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00307 * 180.02562 * 7 2 1 9 9 N 1.36944 * 119.99933 * 359.97438 * 7 2 1 10 10 C 1.48159 * 126.39572 * 0.02562 * 9 7 2 11 11 C 1.56174 * 107.34331 * 185.60943 * 10 9 7 12 12 C 1.53704 * 101.41793 * 21.45609 * 11 10 9 13 13 H 1.09003 * 111.10746 * 79.80978 * 12 11 10 14 14 C 1.51974 * 115.00375 * 206.98926 * 12 11 10 15 15 C 1.53890 * 107.29221 * 176.25553 * 14 12 11 16 16 N 1.46596 * 110.70662 * 308.18753 * 15 14 12 17 17 C 1.34777 * 119.74721 * 227.72910 * 16 15 14 18 18 O 1.21288 * 119.99719 * 179.97438 * 17 16 15 19 19 C 1.50703 * 120.00611 * 359.97438 * 17 16 15 20 20 H 1.09000 * 115.47500 * 34.67542 * 19 17 16 21 21 C 1.52994 * 117.43394 * 180.02562 * 19 17 16 22 22 H 1.09002 * 119.80857 * 355.36558 * 21 19 17 23 23 C 1.54481 * 118.53944 * 197.80657 * 21 19 17 24 24 O 1.44422 * 104.80507 * 273.17133 * 23 21 19 25 25 C 1.44424 * 105.27705 * 40.51032 * 24 23 21 26 26 C 1.53002 * 117.43029 * 249.35338 * 19 17 16 27 27 H 1.08992 * 119.81042 * 4.62711 * 26 19 17 28 28 C 1.47797 * 120.49456 * 48.00145 * 16 15 14 29 29 C 1.45502 * 126.39726 * 179.97438 * 9 7 2 30 30 H 1.09000 * 109.57085 * 266.62267 * 29 9 7 31 31 H 0.97006 * 119.99924 * 359.97438 * 1 2 3 32 32 H 1.08996 * 109.91639 * 304.34656 * 10 9 7 33 33 H 1.08994 * 109.91968 * 65.45118 * 10 9 7 34 34 H 1.08991 * 110.75532 * 263.62849 * 11 10 9 35 35 H 1.09006 * 111.54389 * 139.61997 * 11 10 9 36 36 H 1.09000 * 109.89478 * 56.81022 * 14 12 11 37 37 H 1.08998 * 109.88889 * 295.70312 * 14 12 11 38 38 H 1.08995 * 109.23274 * 187.86406 * 15 14 12 39 39 H 1.08999 * 109.22730 * 68.49771 * 15 14 12 40 40 H 1.09005 * 110.37161 * 32.00174 * 23 21 19 41 41 H 1.08995 * 110.37074 * 154.33755 * 23 21 19 42 42 H 1.08997 * 110.37497 * 200.65796 * 25 24 23 43 43 H 1.09005 * 110.37091 * 78.31842 * 25 24 23 44 44 H 1.08996 * 110.06380 * 67.70636 * 28 16 15 45 45 H 1.09001 * 110.05787 * 189.27094 * 28 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1039 1.6964 -1.2125 5 1 1.2852 2.7465 0.0006 6 1 3.1039 1.6964 1.2125 7 6 2.0102 -1.2021 -0.0005 8 1 3.0902 -1.2022 -0.0001 9 7 1.3255 -2.3881 -0.0005 10 6 -0.1469 -2.5531 -0.0005 11 6 -0.4443 -4.0793 0.1452 12 6 0.8682 -4.5874 0.7629 13 1 0.8999 -4.3904 1.8345 14 6 1.1974 -6.0411 0.4660 15 6 2.5774 -6.3325 1.0815 16 7 3.5602 -5.3358 0.6459 17 6 4.7633 -5.7376 0.1902 18 8 5.5797 -4.9169 -0.1717 19 6 5.0943 -7.2066 0.1304 20 1 4.2603 -7.8657 -0.1109 21 6 6.4768 -7.5968 -0.3960 22 1 7.1474 -6.8279 -0.7797 23 6 6.7053 -9.0516 -0.8626 24 8 7.0787 -9.7687 0.3342 25 6 6.2165 -9.2527 1.3716 26 6 6.1482 -7.7320 1.1073 27 1 6.5705 -7.0652 1.8589 28 6 3.2438 -3.8934 0.7083 29 6 1.9080 -3.7214 -0.0016 30 1 1.9980 -4.0797 -1.0271 31 1 -0.4850 0.8401 0.0004 32 1 -0.5803 -2.0199 0.8456 33 1 -0.5634 -2.1713 -0.9326 34 1 -0.6178 -4.5338 -0.8301 35 1 -1.2859 -4.2611 0.8137 36 1 1.2308 -6.2012 -0.6117 37 1 0.4463 -6.6906 0.9153 38 1 2.9080 -7.3230 0.7691 39 1 2.4983 -6.3074 2.1683 40 1 5.7875 -9.4644 -1.2815 41 1 7.5103 -9.0928 -1.5963 42 1 6.6459 -9.4482 2.3541 43 1 5.2237 -9.6962 1.2953 44 1 3.1630 -3.5730 1.7470 45 1 4.0164 -3.3188 0.1974 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001042193321.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:09:58 Heat of formation + Delta-G solvation = -8.517391 kcal Electronic energy + Delta-G solvation = -26050.848572 eV Core-core repulsion = 22456.359739 eV Total energy + Delta-G solvation = -3594.488832 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 306.173 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.02306 -39.69392 -38.11891 -35.41632 -34.80887 -32.91772 -31.28688 -29.61749 -29.04228 -28.57030 -26.36541 -24.71408 -23.85748 -22.34566 -21.99631 -20.94244 -20.12364 -19.67534 -18.97445 -17.51562 -16.61576 -16.46123 -15.84946 -15.51136 -15.39909 -14.90444 -14.78940 -14.36735 -14.10264 -13.75546 -13.48279 -13.22757 -13.02881 -12.90455 -12.61996 -12.26030 -12.08096 -11.94596 -11.80688 -11.56393 -11.32875 -10.96337 -10.84684 -10.75456 -10.61674 -10.56038 -10.18179 -10.00768 -9.98528 -9.84953 -9.73927 -9.63174 -9.49770 -8.63908 -8.47197 -6.87300 -5.72955 -3.07000 2.36521 2.94326 3.35446 3.42050 3.46174 3.47727 3.68252 4.08457 4.27928 4.49735 4.53448 4.57961 4.66266 4.80254 4.91099 4.95522 5.01196 5.12842 5.32221 5.33476 5.36734 5.39607 5.47862 5.60031 5.63360 5.69558 5.74381 5.85174 5.88193 5.98836 6.05031 6.09338 6.13956 6.33771 6.34960 6.44830 6.53057 6.67076 6.71720 7.02574 7.50273 7.53924 7.59368 7.79727 8.21429 8.25879 9.17909 9.80768 10.47256 11.39210 Molecular weight = 306.17amu Principal moments of inertia in cm(-1) A = 0.021867 B = 0.003556 C = 0.003164 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1280.184953 B = 7872.461778 C = 8846.423301 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.922 5.922 2 C -0.005 4.005 3 Si 0.911 3.089 4 H -0.284 1.284 5 H -0.290 1.290 6 H -0.284 1.284 7 C -0.230 4.230 8 H 0.079 0.921 9 N -0.592 5.592 10 C 0.178 3.822 11 C -0.139 4.139 12 C -0.112 4.112 13 H 0.076 0.924 14 C -0.121 4.121 15 C 0.108 3.892 16 N -0.599 5.599 17 C 0.539 3.461 18 O -0.538 6.538 19 C -0.145 4.145 20 H 0.125 0.875 21 C -0.162 4.162 22 H 0.134 0.866 23 C 0.074 3.926 24 O -0.372 6.372 25 C 0.075 3.925 26 C -0.170 4.170 27 H 0.127 0.873 28 C 0.116 3.884 29 C 0.157 3.843 30 H 0.024 0.976 31 H 0.253 0.747 32 H 0.054 0.946 33 H 0.039 0.961 34 H 0.055 0.945 35 H 0.060 0.940 36 H 0.067 0.933 37 H 0.074 0.926 38 H 0.079 0.921 39 H 0.066 0.934 40 H 0.065 0.935 41 H 0.102 0.898 42 H 0.101 0.899 43 H 0.065 0.935 44 H 0.071 0.929 45 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.660 -20.073 2.678 21.027 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.569 5.569 2 C -0.202 4.202 3 Si 0.741 3.259 4 H -0.211 1.211 5 H -0.216 1.216 6 H -0.211 1.211 7 C -0.358 4.358 8 H 0.097 0.903 9 N -0.317 5.317 10 C 0.053 3.947 11 C -0.177 4.177 12 C -0.132 4.132 13 H 0.095 0.905 14 C -0.160 4.160 15 C -0.015 4.015 16 N -0.332 5.332 17 C 0.326 3.674 18 O -0.415 6.415 19 C -0.166 4.166 20 H 0.143 0.857 21 C -0.181 4.181 22 H 0.152 0.848 23 C -0.002 4.002 24 O -0.291 6.291 25 C -0.001 4.001 26 C -0.189 4.189 27 H 0.145 0.855 28 C -0.006 4.006 29 C 0.048 3.952 30 H 0.041 0.959 31 H 0.063 0.937 32 H 0.073 0.927 33 H 0.057 0.943 34 H 0.074 0.926 35 H 0.079 0.921 36 H 0.086 0.914 37 H 0.092 0.908 38 H 0.097 0.903 39 H 0.084 0.916 40 H 0.083 0.917 41 H 0.120 0.880 42 H 0.119 0.881 43 H 0.083 0.917 44 H 0.089 0.911 45 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 6.195 -19.523 2.510 20.636 hybrid contribution 0.077 1.182 0.006 1.185 sum 6.272 -18.341 2.516 19.546 Atomic orbital electron populations 1.69933 1.04896 1.25219 1.56851 1.24781 0.95686 0.97661 1.02052 0.86216 0.78491 0.83153 0.78044 1.21084 1.21595 1.21091 1.18996 0.90402 0.82261 1.44133 0.90329 1.44155 1.01647 0.99193 1.86719 1.21681 0.83605 0.88382 1.00990 1.22862 0.95847 0.99702 0.99276 1.22272 0.97352 0.93369 1.00234 0.90534 1.21829 0.95293 0.97588 1.01251 1.21781 0.89245 0.91218 0.99278 1.48202 1.13879 1.08019 1.63120 1.19435 0.81939 0.88724 0.77269 1.90711 1.48081 1.54457 1.48291 1.22438 0.94358 0.95344 1.04429 0.85717 1.24194 0.98020 0.99386 0.96491 0.84773 1.22948 1.01200 0.87743 0.88354 1.89191 1.59489 1.61984 1.18443 1.22937 0.95013 0.89400 0.92789 1.24168 1.02606 0.97956 0.94176 0.85534 1.21877 0.99203 0.78112 1.01445 1.21079 0.90908 0.87632 0.95544 0.95874 0.93685 0.92750 0.94300 0.92592 0.92101 0.91397 0.90790 0.90264 0.91563 0.91696 0.88014 0.88089 0.91653 0.91071 0.88970 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.91 10.43 55.49 0.58 -26.33 16 2 C -0.01 -0.15 5.49 -17.43 -0.10 -0.25 16 3 Si 0.91 22.32 29.55 -169.99 -5.02 17.30 16 4 H -0.28 -6.94 7.11 56.52 0.40 -6.54 16 5 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 6 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 7 C -0.23 -6.37 9.88 -15.06 -0.15 -6.52 16 8 H 0.08 2.13 7.42 -52.49 -0.39 1.74 16 9 N -0.59 -14.86 3.35 -162.06 -0.54 -15.41 16 10 C 0.18 4.22 5.47 -1.43 -0.01 4.21 16 11 C -0.14 -2.46 6.63 -24.66 -0.16 -2.62 16 12 C -0.11 -1.85 2.57 -89.49 -0.23 -2.08 16 13 H 0.08 1.30 8.13 -51.93 -0.42 0.88 16 14 C -0.12 -1.47 5.72 -26.79 -0.15 -1.62 16 15 C 0.11 1.21 6.24 -3.53 -0.02 1.18 16 16 N -0.60 -9.02 3.00 -172.46 -0.52 -9.54 16 17 C 0.54 8.27 7.45 -10.98 -0.08 8.19 16 18 O -0.54 -10.46 15.71 5.55 0.09 -10.38 16 19 C -0.14 -1.57 4.72 -91.77 -0.43 -2.00 16 20 H 0.13 1.07 6.43 -51.93 -0.33 0.74 16 21 C -0.16 -1.70 6.63 -89.07 -0.59 -2.29 16 22 H 0.13 1.60 7.81 -51.93 -0.41 1.20 16 23 C 0.07 0.64 7.45 37.93 0.28 0.92 16 24 O -0.37 -3.75 11.65 -35.23 -0.41 -4.16 16 25 C 0.08 0.60 7.45 37.94 0.28 0.88 16 26 C -0.17 -1.64 6.89 -89.06 -0.61 -2.26 16 27 H 0.13 1.29 8.14 -51.93 -0.42 0.86 16 28 C 0.12 2.18 5.71 -3.71 -0.02 2.16 16 29 C 0.16 3.20 2.79 -67.56 -0.19 3.01 16 30 H 0.02 0.52 7.93 -51.93 -0.41 0.11 16 31 H 0.25 7.21 8.31 -40.82 -0.34 6.87 16 32 H 0.05 1.43 7.21 -51.93 -0.37 1.05 16 33 H 0.04 1.02 7.76 -51.93 -0.40 0.62 16 34 H 0.06 0.94 8.12 -51.93 -0.42 0.51 16 35 H 0.06 0.97 8.14 -51.93 -0.42 0.54 16 36 H 0.07 0.86 7.98 -51.93 -0.41 0.44 16 37 H 0.07 0.73 8.14 -51.93 -0.42 0.30 16 38 H 0.08 0.67 5.40 -51.93 -0.28 0.39 16 39 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 40 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 41 H 0.10 0.74 8.14 -51.93 -0.42 0.32 16 42 H 0.10 0.66 8.14 -51.93 -0.42 0.23 16 43 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 44 H 0.07 1.35 8.14 -51.93 -0.42 0.93 16 45 H 0.09 1.98 6.76 -51.93 -0.35 1.63 16 LS Contribution 348.67 15.07 5.25 5.25 Total: -1.00 -32.51 348.67 -9.91 -42.42 By element: Atomic # 1 Polarization: 7.08 SS G_CDS: -7.15 Total: -0.07 kcal Atomic # 6 Polarization: 3.09 SS G_CDS: -2.18 Total: 0.91 kcal Atomic # 7 Polarization: -50.79 SS G_CDS: -0.48 Total: -51.28 kcal Atomic # 8 Polarization: -14.21 SS G_CDS: -0.32 Total: -14.53 kcal Atomic # 14 Polarization: 22.32 SS G_CDS: -5.02 Total: 17.30 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -32.51 -9.91 -42.42 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001042193321.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.898 kcal (2) G-P(sol) polarization free energy of solvation -32.508 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.390 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.907 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.415 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.517 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds