Wall clock time and date at job start Tue Mar 31 2020 04:09:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86800 * 120.00028 * 2 1 4 4 H 1.48499 * 109.47007 * 240.00071 * 3 2 1 5 5 H 1.48499 * 109.47354 * 0.02562 * 3 2 1 6 6 H 1.48498 * 109.47193 * 120.00024 * 3 2 1 7 7 C 1.38806 * 120.00008 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00307 * 180.02562 * 7 2 1 9 9 N 1.36944 * 119.99933 * 359.97438 * 7 2 1 10 10 C 1.48159 * 126.39572 * 0.02562 * 9 7 2 11 11 C 1.56174 * 107.34331 * 185.60943 * 10 9 7 12 12 C 1.53704 * 101.41793 * 21.45609 * 11 10 9 13 13 H 1.09003 * 111.10746 * 79.80978 * 12 11 10 14 14 C 1.51974 * 115.00375 * 206.98926 * 12 11 10 15 15 C 1.53890 * 107.29221 * 176.25553 * 14 12 11 16 16 N 1.46596 * 110.70662 * 308.18753 * 15 14 12 17 17 C 1.34777 * 119.74721 * 227.72910 * 16 15 14 18 18 O 1.21288 * 119.99719 * 179.97438 * 17 16 15 19 19 C 1.50703 * 120.00611 * 359.97438 * 17 16 15 20 20 H 1.09000 * 115.47500 * 34.67542 * 19 17 16 21 21 C 1.52994 * 117.43394 * 180.02562 * 19 17 16 22 22 H 1.09002 * 119.80857 * 355.36558 * 21 19 17 23 23 C 1.54481 * 118.53944 * 197.80657 * 21 19 17 24 24 O 1.44422 * 104.80507 * 273.17133 * 23 21 19 25 25 C 1.44424 * 105.27705 * 40.51032 * 24 23 21 26 26 C 1.53002 * 117.43029 * 249.35338 * 19 17 16 27 27 H 1.08992 * 119.81042 * 4.62711 * 26 19 17 28 28 C 1.47797 * 120.49456 * 48.00145 * 16 15 14 29 29 C 1.45502 * 126.39726 * 179.97438 * 9 7 2 30 30 H 1.09000 * 109.57085 * 266.62267 * 29 9 7 31 31 H 0.97006 * 119.99924 * 359.97438 * 1 2 3 32 32 H 1.08996 * 109.91639 * 304.34656 * 10 9 7 33 33 H 1.08994 * 109.91968 * 65.45118 * 10 9 7 34 34 H 1.08991 * 110.75532 * 263.62849 * 11 10 9 35 35 H 1.09006 * 111.54389 * 139.61997 * 11 10 9 36 36 H 1.09000 * 109.89478 * 56.81022 * 14 12 11 37 37 H 1.08998 * 109.88889 * 295.70312 * 14 12 11 38 38 H 1.08995 * 109.23274 * 187.86406 * 15 14 12 39 39 H 1.08999 * 109.22730 * 68.49771 * 15 14 12 40 40 H 1.09005 * 110.37161 * 32.00174 * 23 21 19 41 41 H 1.08995 * 110.37074 * 154.33755 * 23 21 19 42 42 H 1.08997 * 110.37497 * 200.65796 * 25 24 23 43 43 H 1.09005 * 110.37091 * 78.31842 * 25 24 23 44 44 H 1.08996 * 110.06380 * 67.70636 * 28 16 15 45 45 H 1.09001 * 110.05787 * 189.27094 * 28 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1039 1.6964 -1.2125 5 1 1.2852 2.7465 0.0006 6 1 3.1039 1.6964 1.2125 7 6 2.0102 -1.2021 -0.0005 8 1 3.0902 -1.2022 -0.0001 9 7 1.3255 -2.3881 -0.0005 10 6 -0.1469 -2.5531 -0.0005 11 6 -0.4443 -4.0793 0.1452 12 6 0.8682 -4.5874 0.7629 13 1 0.8999 -4.3904 1.8345 14 6 1.1974 -6.0411 0.4660 15 6 2.5774 -6.3325 1.0815 16 7 3.5602 -5.3358 0.6459 17 6 4.7633 -5.7376 0.1902 18 8 5.5797 -4.9169 -0.1717 19 6 5.0943 -7.2066 0.1304 20 1 4.2603 -7.8657 -0.1109 21 6 6.4768 -7.5968 -0.3960 22 1 7.1474 -6.8279 -0.7797 23 6 6.7053 -9.0516 -0.8626 24 8 7.0787 -9.7687 0.3342 25 6 6.2165 -9.2527 1.3716 26 6 6.1482 -7.7320 1.1073 27 1 6.5705 -7.0652 1.8589 28 6 3.2438 -3.8934 0.7083 29 6 1.9080 -3.7214 -0.0016 30 1 1.9980 -4.0797 -1.0271 31 1 -0.4850 0.8401 0.0004 32 1 -0.5803 -2.0199 0.8456 33 1 -0.5634 -2.1713 -0.9326 34 1 -0.6178 -4.5338 -0.8301 35 1 -1.2859 -4.2611 0.8137 36 1 1.2308 -6.2012 -0.6117 37 1 0.4463 -6.6906 0.9153 38 1 2.9080 -7.3230 0.7691 39 1 2.4983 -6.3074 2.1683 40 1 5.7875 -9.4644 -1.2815 41 1 7.5103 -9.0928 -1.5963 42 1 6.6459 -9.4482 2.3541 43 1 5.2237 -9.6962 1.2953 44 1 3.1630 -3.5730 1.7470 45 1 4.0164 -3.3188 0.1974 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001042193321.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:09:57 Heat of formation + Delta-G solvation = -30.062154 kcal Electronic energy + Delta-G solvation = -26051.782823 eV Core-core repulsion = 22456.359739 eV Total energy + Delta-G solvation = -3595.423083 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 306.173 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.98710 -40.82858 -39.47220 -36.89083 -35.62934 -34.67738 -32.90291 -31.11889 -30.21792 -29.66259 -27.34547 -26.56890 -25.14357 -23.58030 -22.98280 -21.85334 -21.67376 -21.12950 -20.07140 -18.80807 -18.30743 -17.46647 -16.93710 -16.70713 -16.42076 -16.17213 -16.05229 -15.71232 -15.61612 -15.19480 -14.87370 -14.47920 -14.10114 -13.98792 -13.78976 -13.56668 -13.50746 -13.16295 -13.06322 -12.84066 -12.74756 -12.57206 -12.49089 -12.14728 -12.04026 -11.79631 -11.54859 -11.46906 -11.38086 -11.23740 -11.04138 -10.87720 -10.75384 -10.60863 -9.73997 -8.93776 -7.89347 -5.24495 1.27888 1.41158 1.43775 1.50173 1.78429 2.45266 2.48101 3.04277 3.22943 3.28566 3.45770 3.52851 3.67184 3.78608 3.88429 3.89941 3.94447 4.05635 4.11246 4.25330 4.28466 4.32653 4.43346 4.54561 4.59602 4.63920 4.77550 4.79074 4.81470 4.84639 4.89472 4.93232 4.98937 5.06445 5.11012 5.14960 5.22796 5.35779 5.47970 5.58710 5.65167 5.74722 5.76275 6.16564 6.35637 7.05321 7.05962 7.73765 8.40460 9.21165 Molecular weight = 306.17amu Principal moments of inertia in cm(-1) A = 0.021867 B = 0.003556 C = 0.003164 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1280.184953 B = 7872.461778 C = 8846.423301 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.947 5.947 2 C -0.060 4.060 3 Si 0.972 3.028 4 H -0.282 1.282 5 H -0.289 1.289 6 H -0.277 1.277 7 C -0.241 4.241 8 H 0.073 0.927 9 N -0.614 5.614 10 C 0.179 3.821 11 C -0.121 4.121 12 C -0.097 4.097 13 H 0.075 0.925 14 C -0.112 4.112 15 C 0.101 3.899 16 N -0.598 5.598 17 C 0.531 3.469 18 O -0.593 6.593 19 C -0.137 4.137 20 H 0.162 0.838 21 C -0.176 4.176 22 H 0.108 0.892 23 C 0.080 3.920 24 O -0.391 6.391 25 C 0.078 3.922 26 C -0.160 4.160 27 H 0.115 0.885 28 C 0.128 3.872 29 C 0.149 3.851 30 H 0.008 0.992 31 H 0.248 0.752 32 H 0.021 0.979 33 H 0.000 1.000 34 H 0.070 0.930 35 H 0.088 0.912 36 H 0.067 0.933 37 H 0.116 0.884 38 H 0.121 0.879 39 H 0.085 0.915 40 H 0.087 0.913 41 H 0.108 0.892 42 H 0.115 0.885 43 H 0.092 0.908 44 H 0.065 0.935 45 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.322 -24.014 3.629 24.863 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.596 5.596 2 C -0.254 4.254 3 Si 0.800 3.200 4 H -0.209 1.209 5 H -0.215 1.215 6 H -0.203 1.203 7 C -0.370 4.370 8 H 0.091 0.909 9 N -0.340 5.340 10 C 0.055 3.945 11 C -0.159 4.159 12 C -0.116 4.116 13 H 0.093 0.907 14 C -0.150 4.150 15 C -0.020 4.020 16 N -0.329 5.329 17 C 0.320 3.680 18 O -0.474 6.474 19 C -0.157 4.157 20 H 0.179 0.821 21 C -0.195 4.195 22 H 0.126 0.874 23 C 0.004 3.996 24 O -0.310 6.310 25 C 0.002 3.998 26 C -0.179 4.179 27 H 0.133 0.867 28 C 0.004 3.996 29 C 0.041 3.959 30 H 0.025 0.975 31 H 0.057 0.943 32 H 0.039 0.961 33 H 0.018 0.982 34 H 0.089 0.911 35 H 0.107 0.893 36 H 0.086 0.914 37 H 0.134 0.866 38 H 0.139 0.861 39 H 0.103 0.897 40 H 0.105 0.895 41 H 0.127 0.873 42 H 0.133 0.867 43 H 0.110 0.890 44 H 0.083 0.917 45 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 5.853 -23.529 3.476 24.494 hybrid contribution 0.230 2.442 -0.314 2.473 sum 6.083 -21.087 3.162 22.173 Atomic orbital electron populations 1.70140 1.06040 1.25376 1.58030 1.25551 0.96581 1.00686 1.02547 0.85261 0.77311 0.79341 0.78116 1.20868 1.21471 1.20306 1.19259 0.90538 0.83879 1.43280 0.90915 1.44432 1.02629 1.00362 1.86533 1.21512 0.82754 0.92684 0.97552 1.22738 0.97572 0.94623 1.01008 1.22212 0.94442 0.95723 0.99240 0.90687 1.21839 0.96857 0.94452 1.01837 1.22174 0.87704 0.91655 1.00439 1.48277 1.14958 1.06804 1.62883 1.20299 0.81199 0.90554 0.75922 1.90689 1.49728 1.56434 1.50520 1.22362 0.95691 0.92167 1.05503 0.82125 1.24214 0.97434 1.00161 0.97721 0.87396 1.23015 1.02542 0.85933 0.88138 1.89182 1.60455 1.62120 1.19263 1.23118 0.96283 0.87410 0.92951 1.24240 1.01008 0.99315 0.93303 0.86664 1.21407 0.97166 0.80898 1.00140 1.21231 0.93057 0.86190 0.95450 0.97506 0.94280 0.96080 0.98206 0.91113 0.89327 0.91405 0.86555 0.86133 0.89719 0.89508 0.87344 0.86675 0.88971 0.91661 0.92841 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -57.79 10.43 21.65 0.23 -57.56 16 2 C -0.06 -3.53 5.49 84.86 0.47 -3.06 16 3 Si 0.97 47.50 29.55 68.60 2.03 49.53 16 4 H -0.28 -13.59 7.11 99.48 0.71 -12.88 16 5 H -0.29 -13.96 7.11 99.48 0.71 -13.26 16 6 H -0.28 -13.10 7.11 99.48 0.71 -12.39 16 7 C -0.24 -13.98 9.88 84.03 0.83 -13.15 16 8 H 0.07 4.19 7.42 -2.91 -0.02 4.16 16 9 N -0.61 -32.15 3.35 -666.63 -2.23 -34.39 16 10 C 0.18 8.84 5.47 87.16 0.48 9.32 16 11 C -0.12 -4.11 6.63 31.93 0.21 -3.89 16 12 C -0.10 -2.97 2.57 -10.06 -0.03 -2.99 16 13 H 0.07 2.37 8.13 -2.39 -0.02 2.35 16 14 C -0.11 -2.17 5.72 30.56 0.17 -2.00 16 15 C 0.10 1.79 6.24 86.66 0.54 2.33 16 16 N -0.60 -17.16 3.00 -817.93 -2.46 -19.61 16 17 C 0.53 15.94 7.45 87.66 0.65 16.59 16 18 O -0.59 -24.08 15.71 -3.06 -0.05 -24.13 16 19 C -0.14 -2.57 4.72 -11.54 -0.05 -2.63 16 20 H 0.16 1.83 6.43 -2.39 -0.02 1.82 16 21 C -0.18 -3.43 6.63 -9.79 -0.06 -3.50 16 22 H 0.11 2.67 7.81 -2.39 -0.02 2.66 16 23 C 0.08 1.14 7.45 72.49 0.54 1.68 16 24 O -0.39 -6.57 11.65 -148.98 -1.74 -8.31 16 25 C 0.08 0.92 7.45 72.49 0.54 1.46 16 26 C -0.16 -2.67 6.89 -9.78 -0.07 -2.74 16 27 H 0.12 2.20 8.14 -2.39 -0.02 2.18 16 28 C 0.13 4.96 5.71 85.88 0.49 5.45 16 29 C 0.15 6.13 2.79 45.76 0.13 6.26 16 30 H 0.01 0.33 7.93 -2.39 -0.02 0.31 16 31 H 0.25 14.71 8.31 -92.70 -0.77 13.94 16 32 H 0.02 1.15 7.21 -2.39 -0.02 1.13 16 33 H 0.00 -0.02 7.76 -2.39 -0.02 -0.04 16 34 H 0.07 2.20 8.12 -2.39 -0.02 2.18 16 35 H 0.09 2.54 8.14 -2.38 -0.02 2.52 16 36 H 0.07 1.39 7.98 -2.39 -0.02 1.37 16 37 H 0.12 1.45 8.14 -2.39 -0.02 1.43 16 38 H 0.12 1.22 5.40 -2.39 -0.01 1.21 16 39 H 0.08 1.29 8.14 -2.39 -0.02 1.27 16 40 H 0.09 0.88 8.14 -2.38 -0.02 0.86 16 41 H 0.11 1.35 8.14 -2.39 -0.02 1.34 16 42 H 0.12 1.03 8.14 -2.39 -0.02 1.01 16 43 H 0.09 0.64 8.14 -2.38 -0.02 0.62 16 44 H 0.07 2.56 8.14 -2.39 -0.02 2.54 16 45 H 0.05 2.46 6.76 -2.39 -0.02 2.45 16 Total: -1.00 -78.16 348.67 1.60 -76.56 By element: Atomic # 1 Polarization: 7.81 SS G_CDS: 0.98 Total: 8.78 kcal Atomic # 6 Polarization: 4.29 SS G_CDS: 4.84 Total: 9.13 kcal Atomic # 7 Polarization: -107.10 SS G_CDS: -4.46 Total: -111.56 kcal Atomic # 8 Polarization: -30.65 SS G_CDS: -1.78 Total: -32.44 kcal Atomic # 14 Polarization: 47.50 SS G_CDS: 2.03 Total: 49.53 kcal Total: -78.16 1.60 -76.56 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001042193321.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.494 kcal (2) G-P(sol) polarization free energy of solvation -78.156 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.662 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.599 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.556 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.062 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds