Wall clock time and date at job start Tue Mar 31 2020 04:16:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30999 * 1 3 3 C 1.50700 * 119.99991 * 2 1 4 4 H 1.09002 * 110.67488 * 357.02872 * 3 2 1 5 5 O 1.44417 * 110.64922 * 234.06727 * 3 2 1 6 6 C 1.43750 * 107.00208 * 201.48266 * 5 3 2 7 7 C 1.54105 * 107.28878 * 26.48317 * 6 5 3 8 8 C 1.54810 * 104.19150 * 357.97544 * 7 6 5 9 9 H 1.09000 * 110.90771 * 97.34646 * 8 7 6 10 10 C 1.50700 * 110.90793 * 220.92197 * 8 7 6 11 11 O 1.21278 * 120.00137 * 115.67007 * 10 8 7 12 12 N 1.34778 * 119.99409 * 295.66831 * 10 8 7 13 13 C 1.47805 * 135.01785 * 0.02562 * 12 10 8 14 14 C 1.54647 * 85.79455 * 153.82684 * 13 12 10 15 15 H 1.09004 * 114.44012 * 140.42283 * 14 13 12 16 16 C 1.53011 * 110.83960 * 270.23112 * 14 13 12 17 17 C 1.53102 * 109.44926 * 143.88662 * 16 14 13 18 18 N 1.46618 * 108.00879 * 301.02813 * 17 16 14 19 19 C 1.36940 * 119.89099 * 237.30755 * 18 17 16 20 20 H 1.07999 * 120.00000 * 151.67051 * 19 18 17 21 21 C 1.38813 * 119.99944 * 331.66298 * 19 18 17 22 22 N 1.31618 * 120.00014 * 335.22811 * 21 19 18 23 23 Si 1.86802 * 119.99859 * 155.21774 * 21 19 18 24 24 H 1.48501 * 109.46926 * 180.02562 * 23 21 19 25 25 H 1.48500 * 109.47024 * 300.00278 * 23 21 19 26 26 H 1.48498 * 109.46968 * 60.00593 * 23 21 19 27 27 C 1.45680 * 120.21785 * 57.57882 * 18 17 16 28 28 C 1.46824 * 135.00857 * 180.02562 * 12 10 8 29 29 H 1.08997 * 111.56021 * 94.46454 * 28 12 10 30 30 H 1.08008 * 119.99987 * 180.02562 * 1 2 3 31 31 H 1.08006 * 120.00029 * 0.02562 * 1 2 3 32 32 H 1.08000 * 120.00015 * 179.97438 * 2 1 3 33 33 H 1.09003 * 109.87496 * 267.06430 * 6 5 3 34 34 H 1.08990 * 109.88342 * 145.91220 * 6 5 3 35 35 H 1.09003 * 110.48545 * 239.29510 * 7 6 5 36 36 H 1.09001 * 110.48204 * 116.65571 * 7 6 5 37 37 H 1.09005 * 113.81719 * 39.60757 * 13 12 10 38 38 H 1.08998 * 113.82562 * 268.04892 * 13 12 10 39 39 H 1.09005 * 109.47283 * 23.89343 * 16 14 13 40 40 H 1.08997 * 109.48391 * 263.88772 * 16 14 13 41 41 H 1.09003 * 109.75479 * 181.40334 * 17 16 14 42 42 H 1.08994 * 109.79442 * 60.67667 * 17 16 14 43 43 H 0.97006 * 119.99965 * 354.27158 * 22 21 19 44 44 H 1.08997 * 108.71072 * 81.48870 * 27 18 17 45 45 H 1.09000 * 108.71231 * 199.50685 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 1 1.3739 2.1476 -0.0529 5 8 3.0049 1.3496 -1.0942 6 6 4.0012 2.3278 -0.7520 7 6 4.0587 2.4042 0.7860 8 6 2.9645 1.4151 1.2563 9 1 3.3977 0.4477 1.5102 10 6 2.1947 1.9796 2.4224 11 8 1.0132 2.2274 2.3062 12 7 2.8192 2.2089 3.5945 13 6 4.1996 2.0380 4.0946 14 6 3.8598 3.1751 5.0860 15 1 4.2599 3.0327 6.0899 16 6 4.1979 4.5408 4.4846 17 6 3.1541 5.5675 4.9322 18 7 1.8389 5.1037 4.4798 19 6 1.0742 5.9025 3.6721 20 1 0.3728 5.4584 2.9814 21 6 1.2006 7.2831 3.7413 22 7 1.6426 7.8491 4.8443 23 14 0.7435 8.3378 2.2688 24 1 0.9678 9.7688 2.5961 25 1 1.5869 7.9580 1.1070 26 1 -0.6872 8.1249 1.9325 27 6 1.3403 3.7982 4.8915 28 6 2.4104 2.7321 4.9041 29 1 2.1465 1.9287 5.5917 30 1 -0.5400 -0.9354 0.0004 31 1 -0.5400 0.9354 -0.0004 32 1 1.8500 -0.9353 0.0004 33 1 3.7229 3.2990 -1.1612 34 1 4.9710 2.0221 -1.1445 35 1 3.8317 3.4144 1.1266 36 1 5.0379 2.0898 1.1472 37 1 4.9672 2.3027 3.3673 38 1 4.3784 1.0752 4.5734 39 1 4.1945 4.4697 3.3968 40 1 5.1849 4.8538 4.8251 41 1 3.3762 6.5371 4.4864 42 1 3.1613 5.6514 6.0189 43 1 1.8011 7.3109 5.6357 44 1 0.9165 3.8854 5.8919 45 1 0.5504 3.4932 4.2052 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001084672949.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:16:19 Heat of formation + Delta-G solvation = 5.621452 kcal Electronic energy + Delta-G solvation = -27112.384818 eV Core-core repulsion = 23518.509092 eV Total energy + Delta-G solvation = -3593.875726 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 306.173 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.84066 -39.58471 -37.46918 -35.56306 -33.83835 -32.55268 -31.62725 -31.01671 -29.01710 -28.18713 -26.90705 -24.00060 -23.76380 -22.57692 -22.22424 -21.06791 -20.09870 -19.61130 -17.89883 -17.55787 -16.73911 -16.36481 -15.84696 -15.68179 -15.47397 -14.66290 -14.24797 -14.02438 -13.73574 -13.63945 -13.54007 -13.38599 -13.13784 -13.08849 -12.51610 -12.40847 -12.00117 -11.84651 -11.69465 -11.48020 -11.22962 -10.96850 -10.89856 -10.83816 -10.69509 -10.51484 -10.10732 -9.96377 -9.92938 -9.79854 -9.46990 -9.32051 -9.04542 -8.43017 -8.25663 -6.81811 -6.01947 -3.17755 2.17577 2.93470 3.00169 3.53889 3.55018 3.73864 3.92703 4.36415 4.53866 4.54734 4.64315 4.67413 4.90871 5.03347 5.07405 5.12009 5.20955 5.25024 5.27794 5.35064 5.43749 5.47599 5.59083 5.65221 5.70831 5.75142 5.79665 5.86556 5.89351 5.94278 5.99931 6.10855 6.33324 6.43420 6.49669 6.56262 6.68691 6.71572 6.86842 6.88157 7.04161 7.20137 8.04615 8.14596 8.49611 8.64262 9.19334 9.91375 10.30799 11.26304 Molecular weight = 306.17amu Principal moments of inertia in cm(-1) A = 0.013156 B = 0.005626 C = 0.004844 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2127.727857 B = 4975.806812 C = 5779.263236 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.156 4.156 3 C 0.125 3.875 4 H 0.090 0.910 5 O -0.372 6.372 6 C 0.049 3.951 7 C -0.145 4.145 8 C -0.129 4.129 9 H 0.104 0.896 10 C 0.550 3.450 11 O -0.525 6.525 12 N -0.627 5.627 13 C 0.094 3.906 14 C -0.107 4.107 15 H 0.088 0.912 16 C -0.118 4.118 17 C 0.148 3.852 18 N -0.588 5.588 19 C -0.339 4.339 20 H 0.055 0.945 21 C -0.025 4.025 22 N -0.919 5.919 23 Si 1.061 2.939 24 H -0.286 1.286 25 H -0.295 1.295 26 H -0.293 1.293 27 C 0.144 3.856 28 C 0.132 3.868 29 H 0.075 0.925 30 H 0.101 0.899 31 H 0.104 0.896 32 H 0.111 0.889 33 H 0.063 0.937 34 H 0.085 0.915 35 H 0.087 0.913 36 H 0.082 0.918 37 H 0.078 0.922 38 H 0.079 0.921 39 H 0.060 0.940 40 H 0.055 0.945 41 H 0.086 0.914 42 H 0.018 0.982 43 H 0.268 0.732 44 H 0.016 0.984 45 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.320 -15.054 -4.274 17.723 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.174 4.174 3 C 0.068 3.932 4 H 0.108 0.892 5 O -0.291 6.291 6 C -0.028 4.028 7 C -0.183 4.183 8 C -0.151 4.151 9 H 0.122 0.878 10 C 0.338 3.662 11 O -0.400 6.400 12 N -0.363 5.363 13 C -0.029 4.029 14 C -0.126 4.126 15 H 0.106 0.894 16 C -0.158 4.158 17 C 0.022 3.978 18 N -0.312 5.312 19 C -0.468 4.468 20 H 0.073 0.927 21 C -0.227 4.227 22 N -0.560 5.560 23 Si 0.891 3.109 24 H -0.211 1.211 25 H -0.222 1.222 26 H -0.220 1.220 27 C 0.017 3.983 28 C 0.028 3.972 29 H 0.093 0.907 30 H 0.119 0.881 31 H 0.122 0.878 32 H 0.129 0.871 33 H 0.082 0.918 34 H 0.104 0.896 35 H 0.105 0.895 36 H 0.101 0.899 37 H 0.096 0.904 38 H 0.097 0.903 39 H 0.079 0.921 40 H 0.074 0.926 41 H 0.104 0.896 42 H 0.036 0.964 43 H 0.078 0.922 44 H 0.034 0.966 45 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 7.501 -13.515 -5.339 16.353 hybrid contribution 0.164 -1.726 0.899 1.953 sum 7.665 -15.241 -4.440 17.628 Atomic orbital electron populations 1.23922 0.95760 1.02326 0.97268 1.22527 0.95713 0.96680 1.02440 1.22017 0.90561 0.97191 0.83424 0.89250 1.88891 1.38576 1.60403 1.41278 1.23139 0.92594 0.93017 0.94035 1.22946 0.98600 1.00698 0.96084 1.22781 0.96993 1.00510 0.94814 0.87826 1.19579 0.86848 0.77651 0.82073 1.90709 1.15448 1.51488 1.82394 1.49750 1.12034 1.63780 1.10755 1.23614 0.84926 0.98643 0.95733 1.22875 0.95459 0.95734 0.98544 0.89398 1.21909 0.99248 0.94171 1.00433 1.20881 0.84144 0.96740 0.96045 1.43563 1.14790 1.14600 1.58228 1.20009 1.21831 0.89717 1.15228 0.92697 1.25756 1.00215 0.94595 1.02094 1.70793 1.46368 1.38168 1.00680 0.83575 0.75957 0.76165 0.75200 1.21111 1.22242 1.21993 1.20225 0.94136 0.85741 0.98192 1.22383 0.96664 0.95926 0.82180 0.90713 0.88089 0.87813 0.87130 0.91846 0.89634 0.89452 0.89929 0.90370 0.90326 0.92096 0.92608 0.89614 0.96404 0.92163 0.96611 0.90909 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.99 14.33 29.01 0.42 -1.57 16 2 C -0.16 -2.06 9.24 -36.03 -0.33 -2.39 16 3 C 0.13 1.86 2.76 -26.83 -0.07 1.78 16 4 H 0.09 1.55 7.19 -51.93 -0.37 1.17 16 5 O -0.37 -5.37 11.21 -35.23 -0.39 -5.76 16 6 C 0.05 0.59 7.70 37.73 0.29 0.88 16 7 C -0.15 -1.80 5.85 -25.20 -0.15 -1.95 16 8 C -0.13 -1.80 2.74 -89.76 -0.25 -2.04 16 9 H 0.10 1.24 8.05 -51.93 -0.42 0.82 16 10 C 0.55 9.66 7.20 -10.98 -0.08 9.58 16 11 O -0.52 -11.32 14.90 5.56 0.08 -11.24 16 12 N -0.63 -10.08 3.34 -173.85 -0.58 -10.66 16 13 C 0.09 1.12 7.77 -3.01 -0.02 1.10 16 14 C -0.11 -1.54 4.39 -89.99 -0.40 -1.94 16 15 H 0.09 1.07 8.14 -51.93 -0.42 0.65 16 16 C -0.12 -2.04 5.66 -26.67 -0.15 -2.19 16 17 C 0.15 3.33 4.65 -3.93 -0.02 3.32 16 18 N -0.59 -14.76 2.85 -174.90 -0.50 -15.25 16 19 C -0.34 -9.72 9.42 -15.06 -0.14 -9.86 16 20 H 0.06 1.67 7.90 -52.49 -0.41 1.26 16 21 C -0.03 -0.73 4.66 -17.43 -0.08 -0.81 16 22 N -0.92 -27.49 12.33 55.49 0.68 -26.81 16 23 Si 1.06 26.04 29.99 -169.99 -5.10 20.94 16 24 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 25 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 26 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 27 C 0.14 3.18 6.19 -5.46 -0.03 3.14 16 28 C 0.13 2.25 4.22 -69.46 -0.29 1.96 16 29 H 0.08 1.11 8.14 -51.93 -0.42 0.69 16 30 H 0.10 1.04 8.06 -52.48 -0.42 0.62 16 31 H 0.10 1.45 7.87 -52.48 -0.41 1.03 16 32 H 0.11 1.27 8.06 -52.49 -0.42 0.84 16 33 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 34 H 0.09 0.82 8.14 -51.93 -0.42 0.39 16 35 H 0.09 1.30 7.85 -51.93 -0.41 0.89 16 36 H 0.08 0.81 7.65 -51.93 -0.40 0.41 16 37 H 0.08 0.83 6.92 -51.93 -0.36 0.48 16 38 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 39 H 0.06 1.13 7.69 -51.93 -0.40 0.74 16 40 H 0.06 0.83 8.14 -51.93 -0.42 0.40 16 41 H 0.09 2.21 6.07 -51.93 -0.32 1.89 16 42 H 0.02 0.40 7.98 -51.93 -0.41 -0.01 16 43 H 0.27 8.02 6.78 -40.82 -0.28 7.74 16 44 H 0.02 0.36 8.14 -51.93 -0.42 -0.06 16 45 H 0.07 1.80 6.36 -51.93 -0.33 1.47 16 LS Contribution 354.15 15.07 5.34 5.34 Total: -1.00 -33.30 354.15 -8.90 -42.19 By element: Atomic # 1 Polarization: 9.37 SS G_CDS: -7.12 Total: 2.25 kcal Atomic # 6 Polarization: 0.31 SS G_CDS: -1.31 Total: -1.00 kcal Atomic # 7 Polarization: -52.33 SS G_CDS: -0.40 Total: -52.72 kcal Atomic # 8 Polarization: -16.68 SS G_CDS: -0.31 Total: -17.00 kcal Atomic # 14 Polarization: 26.04 SS G_CDS: -5.10 Total: 20.94 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -33.30 -8.90 -42.19 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001084672949.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.816 kcal (2) G-P(sol) polarization free energy of solvation -33.296 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.520 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.899 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.195 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.621 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds