Wall clock time and date at job start Tue Mar 31 2020 04:39:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31627 * 1 3 3 Si 1.86800 * 119.99987 * 2 1 4 4 H 1.48506 * 109.46959 * 270.00080 * 3 2 1 5 5 H 1.48498 * 109.47251 * 30.00337 * 3 2 1 6 6 H 1.48502 * 109.46814 * 150.00399 * 3 2 1 7 7 C 1.38809 * 119.99769 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00098 * 359.97438 * 7 2 1 9 9 N 1.36939 * 119.99810 * 179.97438 * 7 2 1 10 10 C 1.46501 * 119.99691 * 179.97438 * 9 7 2 11 11 C 1.53000 * 109.47106 * 180.02562 * 10 9 7 12 12 N 1.46497 * 109.47533 * 180.02562 * 11 10 9 13 13 C 1.34776 * 120.00385 * 180.02562 * 12 11 10 14 14 O 1.21284 * 119.99561 * 359.97438 * 13 12 11 15 15 C 1.50692 * 120.00230 * 179.97438 * 13 12 11 16 16 H 1.09002 * 109.47094 * 59.99959 * 15 13 12 17 17 C 1.53003 * 109.47279 * 300.00038 * 15 13 12 18 18 C 1.53001 * 109.46989 * 179.97438 * 17 15 13 19 19 C 1.53004 * 109.47295 * 60.00221 * 18 17 15 20 20 C 1.52998 * 109.46617 * 299.99931 * 19 18 17 21 21 C 1.52993 * 109.47667 * 59.99927 * 20 19 18 22 22 H 1.09006 * 109.47384 * 179.97438 * 21 20 19 23 23 N 1.46506 * 109.47129 * 59.99868 * 21 20 19 24 24 C 1.34947 * 126.03547 * 116.94319 * 23 21 20 25 25 C 1.35320 * 107.74469 * 179.84351 * 24 23 21 26 26 C 1.39872 * 107.91855 * 0.42241 * 25 24 23 27 27 N 1.30846 * 108.20208 * 359.73692 * 26 25 24 28 28 H 0.97001 * 119.99493 * 0.02562 * 1 2 3 29 29 H 0.97001 * 120.00160 * 0.02562 * 9 7 2 30 30 H 1.09002 * 109.47207 * 60.00431 * 10 9 7 31 31 H 1.08998 * 109.47079 * 300.00153 * 10 9 7 32 32 H 1.09002 * 109.46889 * 60.00049 * 11 10 9 33 33 H 1.09002 * 109.47209 * 300.00678 * 11 10 9 34 34 H 0.96995 * 119.99698 * 359.97438 * 12 11 10 35 35 H 1.09002 * 109.46992 * 299.99983 * 17 15 13 36 36 H 1.09001 * 109.47232 * 59.99402 * 17 15 13 37 37 H 1.09006 * 109.46949 * 179.97438 * 18 17 15 38 38 H 1.08992 * 109.47056 * 299.99376 * 18 17 15 39 39 H 1.09002 * 109.47240 * 59.99612 * 19 18 17 40 40 H 1.08998 * 109.46750 * 179.97438 * 19 18 17 41 41 H 1.09002 * 109.47055 * 299.99794 * 20 19 18 42 42 H 1.09001 * 109.46927 * 180.02562 * 20 19 18 43 43 H 1.07994 * 126.13116 * 359.97438 * 24 23 21 44 44 H 1.08000 * 126.04216 * 180.16176 * 25 24 23 45 45 H 1.08002 * 125.90284 * 179.71943 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4977 2.0464 -1.4001 5 1 1.4478 2.6527 0.7001 6 1 3.5479 1.4401 0.7000 7 6 2.0103 -1.2021 -0.0005 8 1 1.4702 -2.1375 -0.0005 9 7 3.3797 -1.2022 -0.0011 10 6 4.1121 -2.4709 -0.0011 11 6 5.6163 -2.1914 -0.0011 12 7 6.3488 -3.4601 -0.0017 13 6 7.6966 -3.4602 -0.0013 14 8 8.3030 -2.4099 -0.0009 15 6 8.4500 -4.7653 -0.0013 16 1 8.1870 -5.3366 -0.8915 17 6 8.0800 -5.5679 1.2476 18 6 8.8446 -6.8932 1.2472 19 6 10.3490 -6.6142 1.2474 20 6 10.7189 -5.8116 -0.0015 21 6 9.9544 -4.4863 -0.0012 22 1 10.2183 -3.9143 -0.8908 23 7 10.3085 -3.7185 1.1953 24 6 10.9259 -2.5187 1.2148 25 6 11.0677 -2.1488 2.5087 26 6 10.5269 -3.1616 3.3076 27 7 10.0715 -4.1031 2.5213 28 1 -0.4849 0.8401 -0.0004 29 1 3.8647 -0.3621 -0.0007 30 1 3.8484 -3.0427 -0.8909 31 1 3.8490 -3.0423 0.8891 32 1 5.8797 -1.6199 0.8889 33 1 5.8797 -1.6198 -0.8910 34 1 5.8638 -4.3001 -0.0016 35 1 8.3431 -4.9965 2.1378 36 1 7.0084 -5.7670 1.2473 37 1 8.5813 -7.4648 2.1372 38 1 8.5810 -7.4643 0.3571 39 1 10.6124 -6.0430 2.1376 40 1 10.8935 -7.5584 1.2476 41 1 10.4554 -6.3827 -0.8917 42 1 11.7907 -5.6131 -0.0016 43 1 11.2472 -1.9539 0.3522 44 1 11.5223 -1.2352 2.8622 45 1 10.4916 -3.1660 4.3870 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001129755708.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:39:43 Heat of formation + Delta-G solvation = 56.901800 kcal Electronic energy + Delta-G solvation = -25698.893536 eV Core-core repulsion = 22139.534244 eV Total energy + Delta-G solvation = -3559.359292 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 306.180 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -41.59723 -39.83779 -37.84086 -35.86494 -34.03351 -32.78085 -31.84934 -31.10724 -30.04132 -29.27282 -28.04289 -24.36595 -23.31722 -22.98487 -21.52020 -21.45349 -20.80307 -20.41506 -19.63625 -17.89593 -17.12735 -16.61025 -16.23875 -15.59565 -15.25173 -15.07754 -14.68050 -14.42726 -14.10777 -13.90594 -13.76842 -13.70635 -13.40362 -13.03290 -12.74021 -12.68806 -12.62948 -12.52222 -12.21419 -11.68664 -11.53726 -11.49883 -11.28911 -10.97887 -10.93463 -10.86808 -10.55555 -10.18198 -10.03490 -9.75142 -9.63718 -9.23307 -9.04289 -8.90147 -8.52003 -7.32614 -5.82040 -3.19555 1.96434 2.45552 2.63307 2.91242 3.12326 3.36709 3.40527 3.44359 4.10432 4.26274 4.45082 4.55729 4.65645 4.80193 4.85515 4.91521 4.95765 5.03162 5.09525 5.12818 5.30696 5.32801 5.42460 5.46689 5.55191 5.58785 5.61211 5.63699 5.79751 5.84182 5.88833 5.93764 5.94673 6.06667 6.11695 6.25826 6.36451 6.56098 6.59768 6.80259 7.06981 7.50398 7.75449 7.91215 8.21409 8.36090 9.13557 9.85924 10.04259 11.35831 Molecular weight = 306.18amu Principal moments of inertia in cm(-1) A = 0.020981 B = 0.003111 C = 0.002880 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1334.246907 B = 8999.067343 C = 9720.519285 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C 0.007 3.993 3 Si 0.885 3.115 4 H -0.283 1.283 5 H -0.289 1.289 6 H -0.276 1.276 7 C -0.249 4.249 8 H 0.091 0.909 9 N -0.752 5.752 10 C 0.149 3.851 11 C 0.110 3.890 12 N -0.720 5.720 13 C 0.516 3.484 14 O -0.538 6.538 15 C -0.116 4.116 16 H 0.110 0.890 17 C -0.124 4.124 18 C -0.108 4.108 19 C -0.130 4.130 20 C -0.127 4.127 21 C 0.185 3.815 22 H 0.104 0.896 23 N -0.349 5.349 24 C 0.086 3.914 25 C -0.285 4.285 26 C 0.037 3.963 27 N -0.295 5.295 28 H 0.261 0.739 29 H 0.363 0.637 30 H 0.033 0.967 31 H 0.032 0.968 32 H 0.066 0.934 33 H 0.067 0.933 34 H 0.400 0.600 35 H 0.104 0.896 36 H 0.064 0.936 37 H 0.065 0.935 38 H 0.056 0.944 39 H 0.092 0.908 40 H 0.057 0.943 41 H 0.080 0.920 42 H 0.069 0.931 43 H 0.165 0.835 44 H 0.140 0.860 45 H 0.176 0.824 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 25.836 -14.219 1.152 29.513 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.579 5.579 2 C -0.189 4.189 3 Si 0.715 3.285 4 H -0.209 1.209 5 H -0.215 1.215 6 H -0.202 1.202 7 C -0.379 4.379 8 H 0.109 0.891 9 N -0.399 5.399 10 C 0.021 3.979 11 C -0.014 4.014 12 N -0.372 5.372 13 C 0.301 3.699 14 O -0.415 6.415 15 C -0.138 4.138 16 H 0.128 0.872 17 C -0.162 4.162 18 C -0.145 4.145 19 C -0.167 4.167 20 C -0.165 4.165 21 C 0.082 3.918 22 H 0.122 0.878 23 N -0.131 5.131 24 C -0.061 4.061 25 C -0.314 4.314 26 C -0.148 4.148 27 N -0.117 5.117 28 H 0.071 0.929 29 H 0.196 0.804 30 H 0.051 0.949 31 H 0.050 0.950 32 H 0.085 0.915 33 H 0.085 0.915 34 H 0.234 0.766 35 H 0.122 0.878 36 H 0.082 0.918 37 H 0.084 0.916 38 H 0.075 0.925 39 H 0.111 0.889 40 H 0.076 0.924 41 H 0.099 0.901 42 H 0.088 0.912 43 H 0.182 0.818 44 H 0.158 0.842 45 H 0.193 0.807 Dipole moment (debyes) X Y Z Total from point charges 25.397 -14.723 0.962 29.371 hybrid contribution 0.518 1.785 -0.092 1.861 sum 25.915 -12.938 0.870 28.978 Atomic orbital electron populations 1.69704 1.05108 1.26006 1.57085 1.24671 0.95266 0.97313 1.01630 0.86544 0.79299 0.84781 0.77924 1.20909 1.21526 1.20203 1.19010 0.80214 0.94885 1.43780 0.89093 1.42533 1.04157 1.01833 1.91344 1.20723 0.87682 0.90247 0.99226 1.21567 0.92455 0.85150 1.02255 1.45865 1.06162 1.10116 1.75023 1.20407 0.82467 0.90875 0.76109 1.90701 1.68063 1.33319 1.49368 1.21682 0.94283 0.95516 1.02315 0.87247 1.21821 0.99690 0.96599 0.98044 1.21402 0.95054 0.96405 1.01667 1.21725 0.96121 0.99664 0.99213 1.21892 0.99926 0.94633 1.00047 1.21078 0.93352 0.92744 0.84671 0.87808 1.48443 1.44742 1.15165 1.04725 1.22354 0.96517 0.87968 0.99235 1.21382 1.14560 1.03373 0.92108 1.23831 0.98307 0.92728 0.99896 1.77022 1.23990 1.23736 0.86941 0.92916 0.80404 0.94943 0.95009 0.91536 0.91476 0.76554 0.87773 0.91782 0.91596 0.92481 0.88925 0.92401 0.90118 0.91204 0.81760 0.84195 0.80704 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -29.32 13.97 55.49 0.78 -28.54 16 2 C 0.01 0.22 5.50 -17.43 -0.10 0.12 16 3 Si 0.88 22.34 27.74 -169.99 -4.71 17.63 16 4 H -0.28 -7.06 7.11 56.52 0.40 -6.66 16 5 H -0.29 -7.35 7.11 56.52 0.40 -6.95 16 6 H -0.28 -6.63 6.52 56.52 0.37 -6.27 16 7 C -0.25 -7.10 10.47 -15.06 -0.16 -7.26 16 8 H 0.09 2.74 8.06 -52.48 -0.42 2.32 16 9 N -0.75 -18.09 5.41 -59.91 -0.32 -18.41 16 10 C 0.15 2.81 6.37 -4.04 -0.03 2.79 16 11 C 0.11 1.79 5.79 -4.04 -0.02 1.77 16 12 N -0.72 -9.39 5.45 -60.30 -0.33 -9.72 16 13 C 0.52 6.83 6.99 -10.99 -0.08 6.75 16 14 O -0.54 -8.89 14.29 5.55 0.08 -8.81 16 15 C -0.12 -1.09 2.35 -91.77 -0.22 -1.31 16 16 H 0.11 0.77 8.14 -51.93 -0.42 0.34 16 17 C -0.12 -1.16 4.81 -26.73 -0.13 -1.28 16 18 C -0.11 -0.82 5.92 -26.73 -0.16 -0.98 16 19 C -0.13 -1.02 5.64 -26.73 -0.15 -1.17 16 20 C -0.13 -0.90 5.64 -26.74 -0.15 -1.05 16 21 C 0.18 1.69 2.41 -67.93 -0.16 1.52 16 22 H 0.10 0.89 8.03 -51.93 -0.42 0.47 16 23 N -0.35 -3.93 2.42 -54.86 -0.13 -4.06 16 24 C 0.09 0.98 10.29 -17.22 -0.18 0.81 16 25 C -0.28 -3.21 10.80 -40.01 -0.43 -3.64 16 26 C 0.04 0.42 12.03 -17.36 -0.21 0.21 16 27 N -0.29 -3.53 6.72 30.63 0.21 -3.33 16 28 H 0.26 7.79 8.31 -40.82 -0.34 7.45 16 29 H 0.36 8.61 5.53 -40.82 -0.23 8.38 16 30 H 0.03 0.60 8.14 -51.93 -0.42 0.18 16 31 H 0.03 0.60 8.14 -51.93 -0.42 0.18 16 32 H 0.07 1.19 8.14 -51.93 -0.42 0.77 16 33 H 0.07 1.15 8.14 -51.93 -0.42 0.73 16 34 H 0.40 4.20 7.89 -40.82 -0.32 3.88 16 35 H 0.10 1.25 5.27 -51.93 -0.27 0.97 16 36 H 0.06 0.55 7.56 -51.93 -0.39 0.16 16 37 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 38 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 39 H 0.09 0.93 5.51 -51.93 -0.29 0.64 16 40 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 41 H 0.08 0.43 8.14 -51.93 -0.42 0.01 16 42 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 43 H 0.17 1.56 8.06 -52.49 -0.42 1.13 16 44 H 0.14 1.33 8.06 -52.49 -0.42 0.91 16 45 H 0.18 1.50 8.06 -52.49 -0.42 1.08 16 LS Contribution 353.50 15.07 5.33 5.33 Total: -1.00 -34.56 353.50 -8.28 -42.84 By element: Atomic # 1 Polarization: 16.80 SS G_CDS: -7.00 Total: 9.79 kcal Atomic # 6 Polarization: -0.56 SS G_CDS: -2.17 Total: -2.72 kcal Atomic # 7 Polarization: -64.26 SS G_CDS: 0.20 Total: -64.06 kcal Atomic # 8 Polarization: -8.89 SS G_CDS: 0.08 Total: -8.81 kcal Atomic # 14 Polarization: 22.34 SS G_CDS: -4.71 Total: 17.63 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -34.56 -8.28 -42.84 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001129755708.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.746 kcal (2) G-P(sol) polarization free energy of solvation -34.562 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 65.184 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.282 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.844 kcal (6) G-S(sol) free energy of system = (1) + (5) 56.902 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds