Wall clock time and date at job start Tue Mar 31 2020 04:39:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31627 * 1 3 3 Si 1.86800 * 119.99987 * 2 1 4 4 H 1.48506 * 109.46959 * 270.00080 * 3 2 1 5 5 H 1.48498 * 109.47251 * 30.00337 * 3 2 1 6 6 H 1.48502 * 109.46814 * 150.00399 * 3 2 1 7 7 C 1.38809 * 119.99769 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00098 * 359.97438 * 7 2 1 9 9 N 1.36939 * 119.99810 * 179.97438 * 7 2 1 10 10 C 1.46501 * 119.99691 * 179.97438 * 9 7 2 11 11 C 1.53000 * 109.47106 * 180.02562 * 10 9 7 12 12 N 1.46497 * 109.47533 * 180.02562 * 11 10 9 13 13 C 1.34776 * 120.00385 * 180.02562 * 12 11 10 14 14 O 1.21284 * 119.99561 * 359.97438 * 13 12 11 15 15 C 1.50692 * 120.00230 * 179.97438 * 13 12 11 16 16 H 1.09002 * 109.47094 * 59.99959 * 15 13 12 17 17 C 1.53003 * 109.47279 * 300.00038 * 15 13 12 18 18 C 1.53001 * 109.46989 * 179.97438 * 17 15 13 19 19 C 1.53004 * 109.47295 * 60.00221 * 18 17 15 20 20 C 1.52998 * 109.46617 * 299.99931 * 19 18 17 21 21 C 1.52993 * 109.47667 * 59.99927 * 20 19 18 22 22 H 1.09006 * 109.47384 * 179.97438 * 21 20 19 23 23 N 1.46506 * 109.47129 * 59.99868 * 21 20 19 24 24 C 1.34947 * 126.03547 * 116.94319 * 23 21 20 25 25 C 1.35320 * 107.74469 * 179.84351 * 24 23 21 26 26 C 1.39872 * 107.91855 * 0.42241 * 25 24 23 27 27 N 1.30846 * 108.20208 * 359.73692 * 26 25 24 28 28 H 0.97001 * 119.99493 * 0.02562 * 1 2 3 29 29 H 0.97001 * 120.00160 * 0.02562 * 9 7 2 30 30 H 1.09002 * 109.47207 * 60.00431 * 10 9 7 31 31 H 1.08998 * 109.47079 * 300.00153 * 10 9 7 32 32 H 1.09002 * 109.46889 * 60.00049 * 11 10 9 33 33 H 1.09002 * 109.47209 * 300.00678 * 11 10 9 34 34 H 0.96995 * 119.99698 * 359.97438 * 12 11 10 35 35 H 1.09002 * 109.46992 * 299.99983 * 17 15 13 36 36 H 1.09001 * 109.47232 * 59.99402 * 17 15 13 37 37 H 1.09006 * 109.46949 * 179.97438 * 18 17 15 38 38 H 1.08992 * 109.47056 * 299.99376 * 18 17 15 39 39 H 1.09002 * 109.47240 * 59.99612 * 19 18 17 40 40 H 1.08998 * 109.46750 * 179.97438 * 19 18 17 41 41 H 1.09002 * 109.47055 * 299.99794 * 20 19 18 42 42 H 1.09001 * 109.46927 * 180.02562 * 20 19 18 43 43 H 1.07994 * 126.13116 * 359.97438 * 24 23 21 44 44 H 1.08000 * 126.04216 * 180.16176 * 25 24 23 45 45 H 1.08002 * 125.90284 * 179.71943 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4977 2.0464 -1.4001 5 1 1.4478 2.6527 0.7001 6 1 3.5479 1.4401 0.7000 7 6 2.0103 -1.2021 -0.0005 8 1 1.4702 -2.1375 -0.0005 9 7 3.3797 -1.2022 -0.0011 10 6 4.1121 -2.4709 -0.0011 11 6 5.6163 -2.1914 -0.0011 12 7 6.3488 -3.4601 -0.0017 13 6 7.6966 -3.4602 -0.0013 14 8 8.3030 -2.4099 -0.0009 15 6 8.4500 -4.7653 -0.0013 16 1 8.1870 -5.3366 -0.8915 17 6 8.0800 -5.5679 1.2476 18 6 8.8446 -6.8932 1.2472 19 6 10.3490 -6.6142 1.2474 20 6 10.7189 -5.8116 -0.0015 21 6 9.9544 -4.4863 -0.0012 22 1 10.2183 -3.9143 -0.8908 23 7 10.3085 -3.7185 1.1953 24 6 10.9259 -2.5187 1.2148 25 6 11.0677 -2.1488 2.5087 26 6 10.5269 -3.1616 3.3076 27 7 10.0715 -4.1031 2.5213 28 1 -0.4849 0.8401 -0.0004 29 1 3.8647 -0.3621 -0.0007 30 1 3.8484 -3.0427 -0.8909 31 1 3.8490 -3.0423 0.8891 32 1 5.8797 -1.6199 0.8889 33 1 5.8797 -1.6198 -0.8910 34 1 5.8638 -4.3001 -0.0016 35 1 8.3431 -4.9965 2.1378 36 1 7.0084 -5.7670 1.2473 37 1 8.5813 -7.4648 2.1372 38 1 8.5810 -7.4643 0.3571 39 1 10.6124 -6.0430 2.1376 40 1 10.8935 -7.5584 1.2476 41 1 10.4554 -6.3827 -0.8917 42 1 11.7907 -5.6131 -0.0016 43 1 11.2472 -1.9539 0.3522 44 1 11.5223 -1.2352 2.8622 45 1 10.4916 -3.1660 4.3870 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001129755708.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:39:42 Heat of formation + Delta-G solvation = 33.701581 kcal Electronic energy + Delta-G solvation = -25699.899573 eV Core-core repulsion = 22139.534244 eV Total energy + Delta-G solvation = -3560.365329 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 306.180 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -42.39986 -40.82266 -38.65755 -37.43075 -35.58704 -33.65510 -33.42982 -32.24460 -30.83726 -30.09553 -29.52787 -25.73232 -24.34192 -23.98254 -23.14873 -22.20865 -21.65857 -21.35007 -20.43822 -19.86477 -18.21378 -17.48119 -17.16721 -16.80219 -16.48962 -16.14802 -15.89195 -15.64360 -15.49615 -15.15593 -14.88139 -14.69410 -14.46338 -14.28018 -13.80526 -13.54931 -13.47979 -13.37805 -13.26074 -13.13793 -12.87252 -12.71419 -12.63006 -12.31424 -12.12279 -11.96402 -11.85726 -11.63693 -11.18264 -11.06627 -10.85253 -10.66300 -10.18766 -10.00781 -9.40004 -9.34467 -8.08049 -5.43715 1.13904 1.36727 1.38412 1.45729 1.59554 1.73268 2.06205 2.07129 2.44070 3.23621 3.39415 3.45722 3.73043 3.78222 3.91416 3.98723 4.08925 4.14266 4.16211 4.25157 4.28131 4.40547 4.42889 4.49157 4.50561 4.71619 4.83925 4.92605 4.94842 4.96948 5.04485 5.05441 5.19271 5.26551 5.27392 5.34002 5.36619 5.42527 5.59562 5.69176 6.01532 6.15000 6.30212 6.49016 6.92406 6.99963 7.19387 7.74252 7.92008 9.12806 Molecular weight = 306.18amu Principal moments of inertia in cm(-1) A = 0.020981 B = 0.003111 C = 0.002880 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1334.246907 B = 8999.067343 C = 9720.519285 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.979 5.979 2 C -0.058 4.058 3 Si 0.953 3.047 4 H -0.275 1.275 5 H -0.292 1.292 6 H -0.257 1.257 7 C -0.240 4.240 8 H 0.063 0.937 9 N -0.759 5.759 10 C 0.151 3.849 11 C 0.128 3.872 12 N -0.713 5.713 13 C 0.512 3.488 14 O -0.572 6.572 15 C -0.106 4.106 16 H 0.144 0.856 17 C -0.122 4.122 18 C -0.102 4.102 19 C -0.130 4.130 20 C -0.119 4.119 21 C 0.174 3.826 22 H 0.110 0.890 23 N -0.350 5.350 24 C 0.070 3.930 25 C -0.299 4.299 26 C 0.019 3.981 27 N -0.305 5.305 28 H 0.260 0.740 29 H 0.366 0.634 30 H 0.044 0.956 31 H 0.036 0.964 32 H 0.050 0.950 33 H 0.062 0.938 34 H 0.414 0.586 35 H 0.076 0.924 36 H 0.070 0.930 37 H 0.063 0.937 38 H 0.079 0.921 39 H 0.068 0.932 40 H 0.069 0.931 41 H 0.108 0.892 42 H 0.069 0.931 43 H 0.178 0.822 44 H 0.151 0.849 45 H 0.193 0.807 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 27.685 -15.305 0.277 31.635 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.629 5.629 2 C -0.250 4.250 3 Si 0.780 3.220 4 H -0.201 1.201 5 H -0.219 1.219 6 H -0.182 1.182 7 C -0.370 4.370 8 H 0.081 0.919 9 N -0.405 5.405 10 C 0.025 3.975 11 C 0.003 3.997 12 N -0.366 5.366 13 C 0.299 3.701 14 O -0.451 6.451 15 C -0.128 4.128 16 H 0.162 0.838 17 C -0.160 4.160 18 C -0.139 4.139 19 C -0.167 4.167 20 C -0.157 4.157 21 C 0.072 3.928 22 H 0.128 0.872 23 N -0.132 5.132 24 C -0.078 4.078 25 C -0.328 4.328 26 C -0.165 4.165 27 N -0.128 5.128 28 H 0.069 0.931 29 H 0.199 0.801 30 H 0.062 0.938 31 H 0.054 0.946 32 H 0.068 0.932 33 H 0.080 0.920 34 H 0.251 0.749 35 H 0.095 0.905 36 H 0.089 0.911 37 H 0.082 0.918 38 H 0.097 0.903 39 H 0.086 0.914 40 H 0.088 0.912 41 H 0.126 0.874 42 H 0.088 0.912 43 H 0.195 0.805 44 H 0.169 0.831 45 H 0.210 0.790 Dipole moment (debyes) X Y Z Total from point charges 27.285 -15.872 0.087 31.566 hybrid contribution -0.061 2.013 0.194 2.023 sum 27.224 -13.859 0.281 30.550 Atomic orbital electron populations 1.69870 1.07009 1.26884 1.59161 1.25482 0.96120 1.01200 1.02240 0.85449 0.78525 0.79793 0.78274 1.20136 1.21876 1.18177 1.19011 0.82166 0.93825 1.42046 0.91860 1.42556 1.02809 1.03882 1.91265 1.20818 0.88824 0.88229 0.99668 1.21136 0.90892 0.86495 1.01212 1.45742 1.06342 1.09524 1.74970 1.21135 0.82185 0.91924 0.74825 1.90689 1.68657 1.34989 1.50783 1.21732 0.93821 0.93468 1.03766 0.83841 1.21779 1.00376 0.97120 0.96743 1.21372 0.94489 0.95438 1.02640 1.21695 0.96506 0.99926 0.98619 1.21880 0.99602 0.93482 1.00714 1.21378 0.93429 0.93792 0.84178 0.87217 1.48669 1.44353 1.15201 1.04983 1.22701 0.96807 0.88422 0.99837 1.21654 1.14844 1.03940 0.92346 1.24254 0.98452 0.92805 1.00991 1.77040 1.24183 1.24083 0.87496 0.93106 0.80098 0.93846 0.94590 0.93194 0.91997 0.74890 0.90546 0.91127 0.91814 0.90283 0.91359 0.91246 0.87399 0.91206 0.80495 0.83110 0.78970 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.98 -62.64 13.97 21.65 0.30 -62.34 16 2 C -0.06 -3.45 5.50 84.86 0.47 -2.98 16 3 Si 0.95 45.95 27.74 68.60 1.90 47.85 16 4 H -0.28 -12.90 7.11 99.48 0.71 -12.19 16 5 H -0.29 -14.18 7.11 99.48 0.71 -13.47 16 6 H -0.26 -11.44 6.52 99.48 0.65 -10.80 16 7 C -0.24 -13.69 10.47 84.03 0.88 -12.80 16 8 H 0.06 3.89 8.06 -2.91 -0.02 3.87 16 9 N -0.76 -35.67 5.41 -343.45 -1.86 -37.53 16 10 C 0.15 5.49 6.37 86.38 0.55 6.04 16 11 C 0.13 3.99 5.79 86.38 0.50 4.49 16 12 N -0.71 -17.17 5.45 -463.07 -2.52 -19.69 16 13 C 0.51 12.60 6.99 87.65 0.61 13.21 16 14 O -0.57 -18.30 14.29 -3.04 -0.04 -18.34 16 15 C -0.11 -1.71 2.35 -11.54 -0.03 -1.74 16 16 H 0.14 1.36 8.14 -2.39 -0.02 1.34 16 17 C -0.12 -2.01 4.81 30.60 0.15 -1.86 16 18 C -0.10 -1.26 5.92 30.60 0.18 -1.08 16 19 C -0.13 -1.74 5.64 30.59 0.17 -1.57 16 20 C -0.12 -1.33 5.64 30.59 0.17 -1.16 16 21 C 0.17 2.81 2.41 44.99 0.11 2.92 16 22 H 0.11 1.63 8.03 -2.38 -0.02 1.61 16 23 N -0.35 -7.56 2.42 -327.49 -0.79 -8.36 16 24 C 0.07 1.56 10.29 83.54 0.86 2.42 16 25 C -0.30 -6.69 10.80 21.99 0.24 -6.45 16 26 C 0.02 0.44 12.03 85.24 1.03 1.46 16 27 N -0.31 -7.23 6.72 -57.02 -0.38 -7.61 16 28 H 0.26 15.80 8.31 -92.71 -0.77 15.03 16 29 H 0.37 16.73 5.53 -92.71 -0.51 16.21 16 30 H 0.04 1.52 8.14 -2.39 -0.02 1.50 16 31 H 0.04 1.30 8.14 -2.39 -0.02 1.28 16 32 H 0.05 1.74 8.14 -2.39 -0.02 1.72 16 33 H 0.06 2.02 8.14 -2.39 -0.02 2.00 16 34 H 0.41 7.62 7.89 -92.71 -0.73 6.89 16 35 H 0.08 1.76 5.27 -2.39 -0.01 1.74 16 36 H 0.07 1.04 7.56 -2.39 -0.02 1.03 16 37 H 0.06 0.83 8.14 -2.38 -0.02 0.81 16 38 H 0.08 0.67 8.14 -2.39 -0.02 0.65 16 39 H 0.07 1.30 5.51 -2.39 -0.01 1.28 16 40 H 0.07 0.77 8.14 -2.39 -0.02 0.76 16 41 H 0.11 0.66 8.14 -2.39 -0.02 0.64 16 42 H 0.07 0.81 8.14 -2.39 -0.02 0.79 16 43 H 0.18 3.26 8.06 -2.91 -0.02 3.24 16 44 H 0.15 2.84 8.06 -2.91 -0.02 2.82 16 45 H 0.19 3.30 8.06 -2.91 -0.02 3.27 16 Total: -1.00 -75.29 353.50 2.19 -73.10 By element: Atomic # 1 Polarization: 32.35 SS G_CDS: -0.30 Total: 32.04 kcal Atomic # 6 Polarization: -5.01 SS G_CDS: 5.89 Total: 0.88 kcal Atomic # 7 Polarization: -130.28 SS G_CDS: -5.25 Total: -135.53 kcal Atomic # 8 Polarization: -18.30 SS G_CDS: -0.04 Total: -18.34 kcal Atomic # 14 Polarization: 45.95 SS G_CDS: 1.90 Total: 47.85 kcal Total: -75.29 2.19 -73.10 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001129755708.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.802 kcal (2) G-P(sol) polarization free energy of solvation -75.290 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.512 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.189 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.100 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.702 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds