Wall clock time and date at job start Tue Mar 31 2020 03:57:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.34947 * 126.03635 * 2 1 4 4 C 1.35319 * 107.74741 * 180.15104 * 3 2 1 5 5 C 1.50697 * 126.04083 * 179.87418 * 4 3 2 6 6 C 1.52998 * 109.47061 * 67.99790 * 5 4 3 7 7 C 1.53001 * 109.47128 * 307.99708 * 5 4 3 8 8 C 1.50701 * 109.47043 * 187.99398 * 5 4 3 9 9 O 1.21276 * 120.00070 * 232.63134 * 8 5 4 10 10 N 1.34778 * 119.99918 * 52.63397 * 8 5 4 11 11 C 1.46970 * 120.59107 * 4.74912 * 10 8 5 12 12 C 1.53812 * 108.39469 * 124.76050 * 11 10 8 13 13 N 1.46967 * 108.58068 * 49.63708 * 12 11 10 14 14 C 1.36938 * 120.59374 * 124.62769 * 13 12 11 15 15 H 1.07996 * 119.99809 * 209.34067 * 14 13 12 16 16 C 1.38806 * 120.00177 * 29.33402 * 14 13 12 17 17 N 1.31627 * 120.00230 * 16.94743 * 16 14 13 18 18 Si 1.86802 * 120.00149 * 196.94539 * 16 14 13 19 19 H 1.48491 * 109.47275 * 90.00380 * 18 16 14 20 20 H 1.48507 * 109.47183 * 210.00337 * 18 16 14 21 21 H 1.48497 * 109.47214 * 330.00082 * 18 16 14 22 22 C 1.46962 * 118.81141 * 304.64772 * 13 12 11 23 23 C 1.46957 * 120.59506 * 185.03141 * 10 8 5 24 24 C 1.39867 * 107.91633 * 359.61464 * 4 3 2 25 25 N 1.30837 * 108.20591 * 0.23963 * 24 4 3 26 26 H 1.09000 * 109.46718 * 270.25710 * 1 2 3 27 27 H 1.09003 * 109.47222 * 30.25381 * 1 2 3 28 28 H 1.08999 * 109.47467 * 150.25749 * 1 2 3 29 29 H 1.08006 * 126.12618 * 0.02562 * 3 2 1 30 30 H 1.08997 * 109.46999 * 296.28707 * 6 5 4 31 31 H 1.09000 * 109.47248 * 56.28773 * 6 5 4 32 32 H 1.09004 * 109.47135 * 176.28826 * 6 5 4 33 33 H 1.09003 * 109.46897 * 171.66647 * 7 5 4 34 34 H 1.09000 * 109.46701 * 291.66236 * 7 5 4 35 35 H 1.08997 * 109.46892 * 51.66550 * 7 5 4 36 36 H 1.08999 * 109.61271 * 244.54067 * 11 10 8 37 37 H 1.08994 * 109.61072 * 5.05819 * 11 10 8 38 38 H 1.08999 * 109.74414 * 289.84586 * 12 11 10 39 39 H 1.09000 * 109.67392 * 169.38398 * 12 11 10 40 40 H 0.96992 * 120.00191 * 179.97438 * 17 16 14 41 41 H 1.09010 * 109.60743 * 295.48194 * 22 13 12 42 42 H 1.08999 * 109.75070 * 175.05339 * 22 13 12 43 43 H 1.08996 * 109.60949 * 354.94820 * 23 10 8 44 44 H 1.09004 * 109.61213 * 115.28577 * 23 10 8 45 45 H 1.08003 * 125.89903 * 180.22017 * 24 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2589 1.0912 0.0000 4 6 3.5437 0.6666 -0.0034 5 6 4.7680 1.5453 -0.0073 6 6 4.8709 2.2825 1.3294 7 6 4.6612 2.5636 -1.1443 8 6 5.9959 0.6951 -0.2079 9 8 6.9257 0.7805 0.5660 10 7 6.0609 -0.1602 -1.2475 11 6 4.9882 -0.2002 -2.2513 12 6 5.6141 0.0166 -3.6395 13 7 6.7559 -0.8970 -3.7862 14 6 6.8214 -1.7666 -4.8420 15 1 7.3386 -2.7086 -4.7344 16 6 6.2231 -1.4375 -6.0505 17 7 5.8899 -0.1891 -6.3015 18 14 5.8906 -2.7663 -7.3206 19 1 4.5407 -3.3417 -7.0933 20 1 5.9546 -2.1768 -8.6822 21 1 6.9123 -3.8367 -7.1963 22 6 7.8258 -0.8610 -2.7793 23 6 7.2026 -1.0738 -1.3942 24 6 3.5347 -0.7320 0.0034 25 7 2.2892 -1.1327 0.0054 26 1 -0.3633 0.0046 1.0277 27 1 -0.3634 0.8877 -0.5178 28 1 -0.3634 -0.8923 -0.5098 29 1 1.9281 2.1194 0.0004 30 1 4.0149 2.9473 1.4445 31 1 4.8805 1.5582 2.1440 32 1 5.7907 2.8670 1.3521 33 1 5.4690 3.2904 -1.0581 34 1 4.7369 2.0482 -2.1018 35 1 3.7019 3.0774 -1.0830 36 1 4.4921 -1.1702 -2.2183 37 1 4.2660 0.5901 -2.0466 38 1 5.9562 1.0474 -3.7323 39 1 4.8750 -0.1945 -4.4123 40 1 5.4722 0.0409 -7.1461 41 1 8.3253 0.1074 -2.8109 42 1 8.5481 -1.6520 -2.9810 43 1 7.9430 -0.8607 -0.6233 44 1 6.8611 -2.1045 -1.2984 45 1 4.4054 -1.3710 0.0062 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000344912421.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:57:27 Heat of formation + Delta-G solvation = 87.911270 kcal Electronic energy + Delta-G solvation = -27075.044894 eV Core-core repulsion = 23517.030274 eV Total energy + Delta-G solvation = -3558.014621 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 306.180 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.62985 -39.65578 -36.82989 -35.36832 -33.77791 -32.91997 -31.25256 -30.13197 -29.35087 -27.18193 -27.06787 -26.63315 -24.17104 -23.01904 -22.38821 -21.15294 -20.71934 -19.60122 -18.27331 -17.52582 -16.44959 -15.84855 -15.40572 -15.33772 -14.93780 -14.77541 -14.49591 -13.99316 -13.61505 -13.58707 -13.24844 -13.22080 -13.08947 -12.95535 -12.69889 -12.38749 -12.13718 -12.06226 -11.69832 -11.56246 -11.47462 -11.31677 -10.94054 -10.79430 -10.62760 -10.46813 -10.39487 -10.18842 -9.95303 -9.80079 -9.36036 -9.16976 -8.56232 -8.27903 -8.15737 -6.66172 -5.83582 -3.28463 1.88449 2.49515 2.81478 3.07893 3.35481 3.42559 3.43378 3.53380 4.43253 4.46503 4.65682 4.85792 4.96616 4.98393 5.19005 5.20240 5.24751 5.32400 5.34688 5.44097 5.66160 5.71621 5.81216 5.87811 5.90369 5.93269 6.00083 6.06723 6.13204 6.20940 6.28542 6.32064 6.39753 6.45695 6.52376 6.64688 6.84005 6.97259 7.00110 7.27359 7.48762 7.71244 7.74817 8.00963 8.39090 8.65338 9.14778 9.77236 10.35018 11.23999 Molecular weight = 306.18amu Principal moments of inertia in cm(-1) A = 0.014613 B = 0.005162 C = 0.004320 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1915.640083 B = 5422.847753 C = 6479.976522 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.104 3.896 2 N -0.379 5.379 3 C 0.061 3.939 4 C -0.221 4.221 5 C 0.000 4.000 6 C -0.119 4.119 7 C -0.151 4.151 8 C 0.523 3.477 9 O -0.557 6.557 10 N -0.592 5.592 11 C 0.071 3.929 12 C 0.159 3.841 13 N -0.590 5.590 14 C -0.254 4.254 15 H 0.067 0.933 16 C 0.004 3.996 17 N -0.902 5.902 18 Si 0.903 3.097 19 H -0.287 1.287 20 H -0.291 1.291 21 H -0.278 1.278 22 C 0.133 3.867 23 C 0.093 3.907 24 C 0.066 3.934 25 N -0.295 5.295 26 H 0.071 0.929 27 H 0.086 0.914 28 H 0.088 0.912 29 H 0.173 0.827 30 H 0.056 0.944 31 H 0.057 0.943 32 H 0.065 0.935 33 H 0.062 0.938 34 H 0.080 0.920 35 H 0.063 0.937 36 H 0.060 0.940 37 H 0.090 0.910 38 H 0.023 0.977 39 H 0.095 0.905 40 H 0.254 0.746 41 H 0.023 0.977 42 H 0.065 0.935 43 H 0.081 0.919 44 H 0.061 0.939 45 H 0.180 0.820 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.231 5.138 12.691 17.092 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.037 4.037 2 N -0.161 5.161 3 C -0.084 4.084 4 C -0.233 4.233 5 C -0.004 4.004 6 C -0.177 4.177 7 C -0.209 4.209 8 C 0.311 3.689 9 O -0.436 6.436 10 N -0.324 5.324 11 C -0.053 4.053 12 C 0.032 3.968 13 N -0.313 5.313 14 C -0.383 4.383 15 H 0.084 0.916 16 C -0.194 4.194 17 N -0.547 5.547 18 Si 0.733 3.267 19 H -0.214 1.214 20 H -0.218 1.218 21 H -0.204 1.204 22 C 0.006 3.994 23 C -0.031 4.031 24 C -0.121 4.121 25 N -0.115 5.115 26 H 0.090 0.910 27 H 0.104 0.896 28 H 0.107 0.893 29 H 0.190 0.810 30 H 0.075 0.925 31 H 0.076 0.924 32 H 0.084 0.916 33 H 0.082 0.918 34 H 0.099 0.901 35 H 0.082 0.918 36 H 0.079 0.921 37 H 0.108 0.892 38 H 0.041 0.959 39 H 0.113 0.887 40 H 0.064 0.936 41 H 0.041 0.959 42 H 0.083 0.917 43 H 0.100 0.900 44 H 0.080 0.920 45 H 0.197 0.803 Dipole moment (debyes) X Y Z Total from point charges -10.769 4.212 12.906 17.329 hybrid contribution 0.217 0.042 -0.895 0.922 sum -10.553 4.254 12.011 16.544 Atomic orbital electron populations 1.21810 0.74400 1.04507 1.03025 1.48405 1.06487 1.03841 1.57405 1.22100 0.90467 0.93284 1.02579 1.19665 0.93436 0.93613 1.16614 1.19010 0.89685 0.93869 0.97856 1.21636 1.01683 0.99615 0.94717 1.22198 1.02256 0.98222 0.98195 1.20311 0.88053 0.80094 0.80471 1.90619 1.39114 1.68053 1.45829 1.48032 1.22770 1.37081 1.24471 1.23189 0.89537 1.01768 0.90778 1.21260 0.91122 0.92573 0.91836 1.43960 1.18124 1.43553 1.25650 1.19208 1.33670 0.96385 0.89051 0.91552 1.25072 1.01964 0.95716 0.96689 1.70016 1.45149 1.15515 1.23988 0.86281 0.78389 0.81316 0.80739 1.21416 1.21754 1.20358 1.21273 0.91264 0.99130 0.87749 1.22207 0.88694 0.92277 0.99931 1.23909 0.95168 0.94526 0.98470 1.77410 1.01493 1.07961 1.24666 0.91048 0.89579 0.89312 0.81018 0.92535 0.92380 0.91645 0.91845 0.90132 0.91835 0.92127 0.89202 0.95942 0.88650 0.93575 0.95893 0.91675 0.90025 0.92047 0.80348 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 0.75 11.47 59.85 0.69 1.43 16 2 N -0.38 -4.48 4.01 -68.16 -0.27 -4.75 16 3 C 0.06 0.68 10.71 -17.22 -0.18 0.50 16 4 C -0.22 -2.98 3.01 -105.05 -0.32 -3.30 16 5 C 0.00 0.00 0.67 -156.81 -0.11 -0.10 16 6 C -0.12 -1.48 7.81 37.16 0.29 -1.19 16 7 C -0.15 -1.94 8.04 37.16 0.30 -1.64 16 8 C 0.52 9.18 5.80 -10.98 -0.06 9.12 16 9 O -0.56 -11.21 15.31 5.56 0.09 -11.13 16 10 N -0.59 -10.74 2.07 -172.22 -0.36 -11.09 16 11 C 0.07 1.31 3.70 -3.36 -0.01 1.30 16 12 C 0.16 3.63 5.35 -3.36 -0.02 3.62 16 13 N -0.59 -14.47 2.96 -171.77 -0.51 -14.98 16 14 C -0.25 -6.80 9.57 -15.06 -0.14 -6.95 16 15 H 0.07 1.76 7.88 -52.49 -0.41 1.34 16 16 C 0.00 0.12 4.91 -17.43 -0.09 0.03 16 17 N -0.90 -25.52 11.25 55.49 0.62 -24.90 16 18 Si 0.90 21.35 29.59 -169.99 -5.03 16.32 16 19 H -0.29 -6.79 7.11 56.52 0.40 -6.38 16 20 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 21 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 22 C 0.13 2.81 6.67 -3.60 -0.02 2.79 16 23 C 0.09 1.73 6.60 -3.60 -0.02 1.70 16 24 C 0.07 1.01 8.50 -17.37 -0.15 0.86 16 25 N -0.29 -4.47 12.58 30.62 0.39 -4.08 16 26 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 27 H 0.09 0.40 8.14 -51.93 -0.42 -0.02 16 28 H 0.09 0.64 8.14 -51.93 -0.42 0.22 16 29 H 0.17 1.28 7.81 -52.48 -0.41 0.87 16 30 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 31 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 32 H 0.06 0.86 7.90 -51.93 -0.41 0.45 16 33 H 0.06 0.81 8.13 -51.93 -0.42 0.38 16 34 H 0.08 1.20 4.75 -51.93 -0.25 0.96 16 35 H 0.06 0.63 7.41 -51.93 -0.38 0.25 16 36 H 0.06 1.18 7.18 -51.93 -0.37 0.81 16 37 H 0.09 1.50 3.14 -51.93 -0.16 1.34 16 38 H 0.02 0.55 7.81 -51.93 -0.41 0.14 16 39 H 0.10 2.44 6.05 -51.93 -0.31 2.12 16 40 H 0.25 6.96 8.31 -40.82 -0.34 6.62 16 41 H 0.02 0.51 8.14 -51.92 -0.42 0.09 16 42 H 0.06 1.32 7.94 -51.93 -0.41 0.91 16 43 H 0.08 1.48 6.99 -51.93 -0.36 1.12 16 44 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 45 H 0.18 2.88 6.69 -52.48 -0.35 2.53 16 LS Contribution 346.88 15.07 5.23 5.23 Total: -1.00 -32.50 346.88 -6.46 -38.95 By element: Atomic # 1 Polarization: 9.01 SS G_CDS: -6.76 Total: 2.25 kcal Atomic # 6 Polarization: 8.03 SS G_CDS: 0.15 Total: 8.18 kcal Atomic # 7 Polarization: -59.68 SS G_CDS: -0.13 Total: -59.81 kcal Atomic # 8 Polarization: -11.21 SS G_CDS: 0.09 Total: -11.13 kcal Atomic # 14 Polarization: 21.35 SS G_CDS: -5.03 Total: 16.32 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -32.50 -6.46 -38.95 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000344912421.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 126.866 kcal (2) G-P(sol) polarization free energy of solvation -32.495 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 94.371 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.460 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.955 kcal (6) G-S(sol) free energy of system = (1) + (5) 87.911 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds