Wall clock time and date at job start Tue Mar 31 2020 04:03:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52998 * 109.46936 * 2 1 4 4 N 1.46502 * 109.47094 * 179.97438 * 3 2 1 5 5 C 1.34255 * 125.75441 * 125.00438 * 4 3 2 6 6 C 1.38041 * 107.41998 * 180.02562 * 5 4 3 7 7 C 1.47419 * 126.41827 * 179.97438 * 6 5 4 8 8 O 1.21605 * 119.99970 * 359.97438 * 7 6 5 9 9 N 1.34778 * 120.00507 * 180.02562 * 7 6 5 10 10 C 1.46500 * 120.00385 * 179.97438 * 9 7 6 11 11 H 1.08995 * 109.46930 * 35.00598 * 10 9 7 12 12 C 1.52997 * 109.47137 * 274.99807 * 10 9 7 13 13 C 1.53008 * 109.47037 * 154.99641 * 10 9 7 14 14 C 1.53497 * 114.20384 * 179.97438 * 13 10 9 15 15 N 1.47070 * 87.98301 * 87.52522 * 14 13 10 16 16 C 1.36932 * 136.05620 * 207.08686 * 15 14 13 17 17 H 1.08006 * 120.00205 * 7.81892 * 16 15 14 18 18 C 1.38809 * 120.00281 * 187.82655 * 16 15 14 19 19 N 1.31616 * 120.00068 * 195.17204 * 18 16 15 20 20 Si 1.86802 * 119.99918 * 15.16359 * 18 16 15 21 21 H 1.48504 * 109.47042 * 270.00682 * 20 18 16 22 22 H 1.48499 * 109.47021 * 30.00157 * 20 18 16 23 23 H 1.48492 * 109.47106 * 150.00508 * 20 18 16 24 24 C 1.47068 * 87.88415 * 27.33811 * 15 14 13 25 25 C 1.41294 * 107.16926 * 0.23808 * 6 5 4 26 26 N 1.30451 * 108.02173 * 359.59293 * 25 6 5 27 27 H 1.09003 * 109.47081 * 179.97438 * 1 2 3 28 28 H 1.08994 * 109.47175 * 299.99808 * 1 2 3 29 29 H 1.08998 * 109.47128 * 59.99888 * 1 2 3 30 30 H 1.09006 * 109.46879 * 240.00846 * 2 1 3 31 31 H 1.08998 * 109.47128 * 120.00112 * 2 1 3 32 32 H 1.09004 * 109.46944 * 59.99988 * 3 2 1 33 33 H 1.08996 * 109.47437 * 300.00529 * 3 2 1 34 34 H 1.08005 * 126.29132 * 359.97438 * 5 4 3 35 35 H 0.97001 * 119.99491 * 359.97438 * 9 7 6 36 36 H 1.08996 * 109.46758 * 60.00334 * 12 10 9 37 37 H 1.08999 * 109.46751 * 180.02562 * 12 10 9 38 38 H 1.08995 * 109.47159 * 299.99950 * 12 10 9 39 39 H 1.09008 * 113.41028 * 46.80551 * 13 10 9 40 40 H 1.08996 * 113.46841 * 332.74047 * 14 13 10 41 41 H 1.08998 * 113.51535 * 202.31022 * 14 13 10 42 42 H 0.96995 * 120.00585 * 354.89801 * 19 18 16 43 43 H 1.09005 * 113.46482 * 87.44223 * 24 15 14 44 44 H 1.09000 * 113.46807 * 217.87726 * 24 15 14 45 45 H 1.07997 * 125.99248 * 179.73448 * 25 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5050 1.4425 0.0006 5 6 4.2898 2.0674 -0.8916 6 6 5.6000 1.8179 -0.5356 7 6 6.8042 2.3053 -1.2325 8 8 6.6934 2.9993 -2.2249 9 7 8.0280 1.9809 -0.7704 10 6 9.2247 2.4647 -1.4633 11 1 9.0363 3.4622 -1.8602 12 6 9.5678 1.5147 -2.6124 13 6 10.3959 2.5200 -0.4802 14 6 11.7118 3.0148 -1.0963 15 7 11.2819 4.3862 -0.7844 16 6 11.5191 5.6341 -1.2957 17 1 12.0703 5.7441 -2.2180 18 6 11.0514 6.7580 -0.6286 19 7 11.0087 7.9195 -1.2460 20 14 10.4823 6.6217 1.1454 21 1 9.0318 6.3048 1.1770 22 1 11.2399 5.5413 1.8266 23 1 10.7227 7.9104 1.8427 24 6 10.4902 3.8281 0.3222 25 6 5.5708 1.0029 0.6181 26 7 4.3222 0.7908 0.9310 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3633 0.5138 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 1.8933 -0.5137 -0.8901 31 1 1.8933 -0.5138 0.8900 32 1 1.6766 1.9563 0.8900 33 1 1.6766 1.9564 -0.8899 34 1 3.9572 2.6564 -1.7336 35 1 8.1164 1.4270 0.0210 36 1 8.7335 1.4755 -3.3127 37 1 10.4584 1.8746 -3.1276 38 1 9.7562 0.5173 -2.2154 39 1 10.4968 1.6186 0.1244 40 1 11.7919 2.8174 -2.1653 41 1 12.5965 2.7007 -0.5425 42 1 11.3722 8.0068 -2.1410 43 1 11.0524 3.7281 1.2508 44 1 9.5295 4.3238 0.4618 45 1 6.4313 0.6239 1.1494 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000970511368.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:03:42 Heat of formation + Delta-G solvation = 92.592569 kcal Electronic energy + Delta-G solvation = -24992.116904 eV Core-core repulsion = 21434.305280 eV Total energy + Delta-G solvation = -3557.811624 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 306.180 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.51593 -39.55333 -38.23554 -35.75708 -34.65263 -32.38856 -32.00809 -30.85766 -29.77994 -27.74622 -26.85595 -25.27381 -23.92734 -22.74167 -22.57841 -21.19894 -20.80887 -19.91035 -19.00321 -17.84023 -17.30064 -16.20886 -16.16560 -15.83648 -15.18011 -14.97584 -14.71926 -14.62047 -14.16473 -13.80029 -13.55380 -13.41812 -13.17805 -13.10051 -12.90160 -12.74252 -12.46058 -12.14304 -11.90464 -11.86230 -11.46333 -11.38864 -11.14270 -11.03863 -10.86099 -10.59315 -10.22045 -9.99211 -9.77389 -9.58607 -9.39807 -9.09725 -8.90614 -8.66747 -8.56758 -7.09034 -6.21657 -3.13057 1.45136 2.08888 2.10480 3.46824 3.48319 3.53510 3.65395 3.68024 4.04593 4.33967 4.52706 4.58690 4.67396 4.73563 4.83061 4.86111 4.96184 5.00169 5.10871 5.14977 5.21007 5.29480 5.48642 5.50883 5.56338 5.62088 5.71240 5.73379 5.82168 5.93347 6.03951 6.16363 6.24120 6.28089 6.36612 6.44569 6.56122 6.61669 6.62327 6.80431 7.02972 7.22470 7.35420 7.84035 8.32722 8.57096 9.06381 9.60320 10.46734 11.28528 Molecular weight = 306.18amu Principal moments of inertia in cm(-1) A = 0.019136 B = 0.003148 C = 0.002948 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1462.841700 B = 8891.223882 C = 9495.338464 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.136 4.136 3 C 0.129 3.871 4 N -0.363 5.363 5 C 0.125 3.875 6 C -0.287 4.287 7 C 0.592 3.408 8 O -0.546 6.546 9 N -0.718 5.718 10 C 0.169 3.831 11 H 0.103 0.897 12 C -0.156 4.156 13 C -0.140 4.140 14 C 0.126 3.874 15 N -0.623 5.623 16 C -0.302 4.302 17 H 0.081 0.919 18 C -0.024 4.024 19 N -0.933 5.933 20 Si 1.062 2.938 21 H -0.294 1.294 22 H -0.282 1.282 23 H -0.297 1.297 24 C 0.105 3.895 25 C 0.081 3.919 26 N -0.298 5.298 27 H 0.062 0.938 28 H 0.059 0.941 29 H 0.058 0.942 30 H 0.068 0.932 31 H 0.079 0.921 32 H 0.089 0.911 33 H 0.099 0.901 34 H 0.187 0.813 35 H 0.394 0.606 36 H 0.056 0.944 37 H 0.068 0.932 38 H 0.051 0.949 39 H 0.076 0.924 40 H 0.049 0.951 41 H 0.037 0.963 42 H 0.261 0.739 43 H 0.045 0.955 44 H 0.052 0.948 45 H 0.189 0.811 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.530 -19.827 3.691 26.722 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.174 4.174 3 C 0.009 3.991 4 N -0.142 5.142 5 C -0.026 4.026 6 C -0.302 4.302 7 C 0.379 3.621 8 O -0.424 6.424 9 N -0.368 5.368 10 C 0.065 3.935 11 H 0.121 0.879 12 C -0.214 4.214 13 C -0.160 4.160 14 C -0.001 4.001 15 N -0.351 5.351 16 C -0.428 4.428 17 H 0.099 0.901 18 C -0.223 4.223 19 N -0.576 5.576 20 Si 0.893 3.107 21 H -0.222 1.222 22 H -0.209 1.209 23 H -0.224 1.224 24 C -0.021 4.021 25 C -0.107 4.107 26 N -0.118 5.118 27 H 0.081 0.919 28 H 0.078 0.922 29 H 0.077 0.923 30 H 0.087 0.913 31 H 0.097 0.903 32 H 0.107 0.893 33 H 0.118 0.882 34 H 0.204 0.796 35 H 0.227 0.773 36 H 0.075 0.925 37 H 0.087 0.913 38 H 0.070 0.930 39 H 0.094 0.906 40 H 0.068 0.932 41 H 0.055 0.945 42 H 0.071 0.929 43 H 0.062 0.938 44 H 0.070 0.930 45 H 0.206 0.794 Dipole moment (debyes) X Y Z Total from point charges -19.176 -18.775 4.928 27.286 hybrid contribution 1.483 -0.652 -1.279 2.064 sum -17.693 -19.427 3.648 26.528 Atomic orbital electron populations 1.21714 0.94298 1.02602 1.02244 1.21803 0.96494 0.95205 1.03911 1.21934 0.73523 0.99332 1.04360 1.48564 1.06841 1.38244 1.20549 1.23002 0.90176 0.94998 0.94408 1.20349 0.93630 1.12941 1.03304 1.17201 0.82227 0.79291 0.83389 1.90798 1.86777 1.38457 1.26355 1.45839 1.05469 1.53967 1.31566 1.20612 0.82091 0.99558 0.91244 0.87877 1.22105 1.02020 0.98885 0.98420 1.23186 0.96470 0.97920 0.98433 1.22398 0.93005 0.86194 0.98508 1.46247 1.53258 1.02126 1.33485 1.20110 1.36727 0.80522 1.05485 0.90125 1.25726 0.99732 0.91586 1.05260 1.70886 1.45914 1.25167 1.15614 0.83783 0.76039 0.74643 0.76195 1.22156 1.20880 1.22434 1.22721 0.95902 0.91070 0.92363 1.24065 0.95305 0.96302 0.95043 1.77104 1.01796 1.19449 1.13416 0.91877 0.92207 0.92319 0.91301 0.90258 0.89299 0.88240 0.79576 0.77273 0.92540 0.91305 0.93033 0.90557 0.93243 0.94533 0.92895 0.93772 0.93042 0.79403 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.61 9.91 37.16 0.37 -0.25 16 2 C -0.14 -0.80 6.11 -26.73 -0.16 -0.96 16 3 C 0.13 0.83 6.49 -4.04 -0.03 0.80 16 4 N -0.36 -3.68 3.65 -60.81 -0.22 -3.90 16 5 C 0.13 1.42 11.25 -16.56 -0.19 1.24 16 6 C -0.29 -3.76 6.13 -105.07 -0.64 -4.40 16 7 C 0.59 9.56 7.78 -12.52 -0.10 9.46 16 8 O -0.55 -11.10 16.56 5.27 0.09 -11.01 16 9 N -0.72 -10.32 5.07 -54.88 -0.28 -10.60 16 10 C 0.17 2.85 2.43 -67.93 -0.16 2.69 16 11 H 0.10 2.29 7.36 -51.93 -0.38 1.91 16 12 C -0.16 -2.29 9.29 37.16 0.35 -1.95 16 13 C -0.14 -2.33 3.73 -89.97 -0.34 -2.66 16 14 C 0.13 2.43 8.08 -8.50 -0.07 2.36 16 15 N -0.62 -15.46 3.42 -184.59 -0.63 -16.09 16 16 C -0.30 -8.90 11.03 -15.06 -0.17 -9.07 16 17 H 0.08 2.50 8.06 -52.48 -0.42 2.08 16 18 C -0.02 -0.74 5.50 -17.43 -0.10 -0.83 16 19 N -0.93 -30.40 13.70 55.49 0.76 -29.64 16 20 Si 1.06 27.61 25.50 -169.99 -4.34 23.28 16 21 H -0.29 -7.48 6.97 56.52 0.39 -7.09 16 22 H -0.28 -6.73 5.66 56.52 0.32 -6.42 16 23 H -0.30 -7.79 7.11 56.52 0.40 -7.38 16 24 C 0.11 2.22 5.15 -8.37 -0.04 2.18 16 25 C 0.08 0.89 11.50 -16.98 -0.20 0.69 16 26 N -0.30 -3.46 12.33 30.86 0.38 -3.08 16 27 H 0.06 0.25 8.14 -51.93 -0.42 -0.17 16 28 H 0.06 0.22 8.14 -51.93 -0.42 -0.20 16 29 H 0.06 0.20 8.14 -51.93 -0.42 -0.22 16 30 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 31 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 32 H 0.09 0.51 8.14 -51.93 -0.42 0.09 16 33 H 0.10 0.42 8.06 -51.93 -0.42 0.00 16 34 H 0.19 1.78 8.06 -52.48 -0.42 1.35 16 35 H 0.39 4.26 7.56 -40.82 -0.31 3.96 16 36 H 0.06 0.88 8.14 -51.93 -0.42 0.45 16 37 H 0.07 1.03 6.49 -51.93 -0.34 0.69 16 38 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 39 H 0.08 0.99 8.14 -51.92 -0.42 0.57 16 40 H 0.05 0.93 6.43 -51.93 -0.33 0.59 16 41 H 0.04 0.67 8.14 -51.93 -0.42 0.25 16 42 H 0.26 8.39 8.73 -40.82 -0.36 8.03 16 43 H 0.04 0.91 7.02 -51.93 -0.36 0.54 16 44 H 0.05 1.17 6.21 -51.93 -0.32 0.85 16 45 H 0.19 1.45 7.50 -52.49 -0.39 1.05 16 LS Contribution 367.25 15.07 5.53 5.53 Total: -1.00 -37.55 367.25 -7.35 -44.91 By element: Atomic # 1 Polarization: 8.47 SS G_CDS: -7.18 Total: 1.30 kcal Atomic # 6 Polarization: 0.77 SS G_CDS: -1.47 Total: -0.71 kcal Atomic # 7 Polarization: -63.31 SS G_CDS: 0.01 Total: -63.30 kcal Atomic # 8 Polarization: -11.10 SS G_CDS: 0.09 Total: -11.01 kcal Atomic # 14 Polarization: 27.61 SS G_CDS: -4.34 Total: 23.28 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -37.55 -7.35 -44.91 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000970511368.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 137.502 kcal (2) G-P(sol) polarization free energy of solvation -37.555 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 99.947 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.355 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.910 kcal (6) G-S(sol) free energy of system = (1) + (5) 92.593 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds