Wall clock time and date at job start Tue Mar 31 2020 03:57:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46505 * 1 3 3 C 1.36934 * 120.00290 * 2 1 4 4 H 1.08003 * 119.99638 * 142.38023 * 3 2 1 5 5 C 1.38814 * 119.99965 * 322.38778 * 3 2 1 6 6 N 1.31619 * 119.99842 * 158.74759 * 5 3 2 7 7 Si 1.86792 * 120.00087 * 338.74371 * 5 3 2 8 8 H 1.48501 * 109.46992 * 95.59044 * 7 5 3 9 9 H 1.48496 * 109.47122 * 215.59174 * 7 5 3 10 10 H 1.48498 * 109.47282 * 335.59194 * 7 5 3 11 11 C 1.46507 * 119.99366 * 180.02562 * 2 1 3 12 12 H 1.09003 * 110.77252 * 176.76302 * 11 2 1 13 13 C 1.55155 * 110.72080 * 53.52613 * 11 2 1 14 14 C 1.54907 * 101.58034 * 206.13127 * 13 11 2 15 15 N 1.47428 * 104.83232 * 37.00837 * 14 13 11 16 16 C 1.34772 * 125.65006 * 156.13922 * 15 14 13 17 17 O 1.21275 * 120.00311 * 175.69874 * 16 15 14 18 18 C 1.50704 * 119.99944 * 355.69710 * 16 15 14 19 19 C 1.52996 * 109.47027 * 61.70543 * 18 16 15 20 20 C 1.53001 * 109.47288 * 181.71021 * 18 16 15 21 21 C 1.50706 * 109.46923 * 301.70626 * 18 16 15 22 22 C 1.34664 * 126.59199 * 351.77442 * 21 18 16 23 23 N 1.34129 * 108.02373 * 179.97438 * 22 21 18 24 24 C 1.30499 * 109.25216 * 359.97438 * 23 22 21 25 25 N 1.35048 * 108.69986 * 359.77077 * 24 23 22 26 26 H 0.97002 * 126.39186 * 180.27478 * 25 24 23 27 27 C 1.47025 * 108.70177 * 335.87122 * 15 14 13 28 28 H 1.08998 * 109.47077 * 272.11850 * 1 2 3 29 29 H 1.09009 * 109.46691 * 32.11064 * 1 2 3 30 30 H 1.09000 * 109.47336 * 152.10748 * 1 2 3 31 31 H 0.96999 * 120.00118 * 179.97438 * 6 5 3 32 32 H 1.09005 * 111.00238 * 324.20611 * 13 11 2 33 33 H 1.08996 * 111.00563 * 88.01592 * 13 11 2 34 34 H 1.08993 * 110.36888 * 278.17269 * 14 13 11 35 35 H 1.08999 * 110.36931 * 155.84769 * 14 13 11 36 36 H 1.08999 * 109.47017 * 58.75545 * 19 18 16 37 37 H 1.09002 * 109.47041 * 178.74439 * 19 18 16 38 38 H 1.08989 * 109.47423 * 298.74607 * 19 18 16 39 39 H 1.09000 * 109.47097 * 59.99707 * 20 18 16 40 40 H 1.08991 * 109.47408 * 180.02562 * 20 18 16 41 41 H 1.08995 * 109.46883 * 299.99987 * 20 18 16 42 42 H 1.08006 * 125.99389 * 359.95706 * 22 21 18 43 43 H 1.08000 * 125.65322 * 180.02562 * 24 23 22 44 44 H 1.09004 * 109.88242 * 120.47808 * 27 15 14 45 45 H 1.08993 * 109.88204 * 241.48631 * 27 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1498 1.1859 0.0000 4 1 3.0614 1.2830 0.5710 5 6 1.6721 2.2631 -0.7337 6 7 2.0518 3.4862 -0.4300 7 14 0.4908 1.9769 -2.1520 8 1 -0.9051 2.1528 -1.6767 9 1 0.7717 2.9532 -3.2350 10 1 0.6664 0.5969 -2.6718 11 6 2.1974 -1.2689 -0.0006 12 1 3.2720 -1.0950 -0.0580 13 6 1.7247 -2.1750 -1.1679 14 6 2.0497 -3.5861 -0.6175 15 7 1.7499 -3.5072 0.8238 16 6 1.4446 -4.5502 1.6209 17 8 1.2917 -4.3791 2.8117 18 6 1.2933 -5.9293 1.0323 19 6 2.6182 -6.3630 0.4020 20 6 0.9066 -6.9154 2.1364 21 6 0.2175 -5.9098 -0.0230 22 6 -0.6174 -4.8900 -0.2993 23 7 -1.4211 -5.2720 -1.3029 24 6 -1.1155 -6.4897 -1.6593 25 7 -0.0942 -6.9227 -0.8891 26 1 0.3367 -7.7904 -0.9392 27 6 1.8454 -2.1030 1.2491 28 1 -0.3633 0.0380 1.0269 29 1 -0.3633 0.8705 -0.5463 30 1 -0.3634 -0.9083 -0.4808 31 1 1.7183 4.2390 -0.9429 32 1 0.6549 -2.0607 -1.3427 33 1 2.2910 -1.9693 -2.0762 34 1 3.1025 -3.8210 -0.7736 35 1 1.4182 -4.3347 -1.0959 36 1 3.4009 -6.3558 1.1606 37 1 2.5152 -7.3694 -0.0040 38 1 2.8824 -5.6732 -0.3993 39 1 -0.0373 -6.6064 2.5854 40 1 0.7976 -7.9129 1.7108 41 1 1.6846 -6.9295 2.8997 42 1 -0.6368 -3.9324 0.1998 43 1 -1.5966 -7.0556 -2.4433 44 1 0.8900 -1.7736 1.6576 45 1 2.6268 -1.9959 2.0014 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000972730583.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:57:14 Heat of formation + Delta-G solvation = 65.395362 kcal Electronic energy + Delta-G solvation = -26872.042890 eV Core-core repulsion = 23313.051906 eV Total energy + Delta-G solvation = -3558.990984 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 306.180 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -42.53365 -40.09947 -37.79287 -35.45157 -34.91753 -32.55361 -31.76761 -30.15998 -29.16278 -28.48764 -27.32889 -26.16543 -24.73851 -22.87984 -22.43923 -21.47212 -21.12653 -19.45945 -19.20170 -18.15688 -16.99074 -16.48144 -16.16278 -15.50082 -15.21672 -15.16452 -14.71167 -14.23313 -14.08476 -13.80799 -13.46148 -13.37321 -13.03651 -12.97053 -12.81252 -12.53548 -12.39344 -12.21558 -12.03541 -11.95635 -11.79649 -11.64641 -11.25198 -10.89205 -10.83439 -10.51588 -10.21511 -10.17637 -10.12182 -9.92072 -9.70961 -9.57636 -8.54787 -8.54086 -8.39136 -6.87666 -6.01501 -3.45720 1.78292 2.47635 2.94036 3.00562 3.12027 3.32894 3.47228 3.52478 4.21681 4.29454 4.51036 4.58876 4.63061 4.75229 4.84585 5.10202 5.13090 5.17350 5.21109 5.34058 5.36974 5.39957 5.45155 5.48920 5.55954 5.69753 5.74611 5.81955 5.91723 5.93923 5.98473 6.15112 6.23545 6.36959 6.46395 6.49116 6.53287 6.66429 6.73540 6.83326 7.11409 7.66904 7.87392 8.01038 8.22494 8.35001 8.93003 9.67003 10.06290 11.13569 Molecular weight = 306.18amu Principal moments of inertia in cm(-1) A = 0.020464 B = 0.004483 C = 0.003998 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1367.961370 B = 6244.782131 C = 7001.574356 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.108 3.892 2 N -0.596 5.596 3 C -0.275 4.275 4 H 0.081 0.919 5 C 0.038 3.962 6 N -0.899 5.899 7 Si 0.886 3.114 8 H -0.286 1.286 9 H -0.303 1.303 10 H -0.268 1.268 11 C 0.173 3.827 12 H 0.088 0.912 13 C -0.156 4.156 14 C 0.092 3.908 15 N -0.604 5.604 16 C 0.541 3.459 17 O -0.536 6.536 18 C -0.001 4.001 19 C -0.150 4.150 20 C -0.125 4.125 21 C -0.016 4.016 22 C -0.005 4.005 23 N -0.487 5.487 24 C 0.184 3.816 25 N -0.563 5.563 26 H 0.417 0.583 27 C 0.088 3.912 28 H 0.019 0.981 29 H 0.042 0.958 30 H 0.037 0.963 31 H 0.264 0.736 32 H 0.077 0.923 33 H 0.079 0.921 34 H 0.065 0.935 35 H 0.079 0.921 36 H 0.071 0.929 37 H 0.061 0.939 38 H 0.074 0.926 39 H 0.067 0.933 40 H 0.056 0.944 41 H 0.071 0.929 42 H 0.168 0.832 43 H 0.209 0.791 44 H 0.071 0.929 45 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.043 -25.170 -2.675 25.333 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.037 4.037 2 N -0.318 5.318 3 C -0.403 4.403 4 H 0.098 0.902 5 C -0.163 4.163 6 N -0.540 5.540 7 Si 0.717 3.283 8 H -0.215 1.215 9 H -0.231 1.231 10 H -0.193 1.193 11 C 0.064 3.936 12 H 0.106 0.894 13 C -0.196 4.196 14 C -0.031 4.031 15 N -0.337 5.337 16 C 0.328 3.672 17 O -0.413 6.413 18 C -0.006 4.006 19 C -0.208 4.208 20 C -0.183 4.183 21 C -0.132 4.132 22 C -0.153 4.153 23 N -0.205 5.205 24 C -0.100 4.100 25 N -0.167 5.167 26 H 0.255 0.745 27 C -0.036 4.036 28 H 0.037 0.963 29 H 0.060 0.940 30 H 0.055 0.945 31 H 0.074 0.926 32 H 0.096 0.904 33 H 0.097 0.903 34 H 0.084 0.916 35 H 0.097 0.903 36 H 0.090 0.910 37 H 0.080 0.920 38 H 0.093 0.907 39 H 0.086 0.914 40 H 0.075 0.925 41 H 0.090 0.910 42 H 0.185 0.815 43 H 0.225 0.775 44 H 0.090 0.910 45 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -1.799 -24.359 -2.371 24.540 hybrid contribution 0.072 -0.946 -0.656 1.153 sum -1.727 -25.305 -3.027 25.543 Atomic orbital electron populations 1.21347 0.84748 0.98965 0.98596 1.43987 1.00513 1.01315 1.85950 1.18784 1.09759 0.86863 1.24882 0.90186 1.25455 0.98107 0.95190 0.97586 1.69860 1.46333 0.97924 1.39851 0.86809 0.80291 0.77835 0.83396 1.21458 1.23143 1.19289 1.21466 0.96977 0.85422 0.89777 0.89403 1.23395 1.02871 0.93129 1.00189 1.22640 1.00077 0.99691 0.80714 1.48447 1.67715 1.07600 1.09980 1.19593 0.76990 0.84657 0.85988 1.90711 1.51115 1.84568 1.14878 1.19186 0.93313 0.94787 0.93308 1.22052 0.95061 1.01756 1.01888 1.21681 1.03325 0.96313 0.96939 1.20662 1.03153 0.91024 0.98313 1.22247 0.95219 0.99606 0.98219 1.70358 1.25897 1.10610 1.13678 1.25026 0.91751 0.93662 0.99512 1.43126 1.29521 1.15500 1.28520 0.74489 1.22750 1.02319 0.78951 0.99586 0.96291 0.93959 0.94487 0.92620 0.90447 0.90253 0.91639 0.90267 0.91017 0.91977 0.90741 0.91389 0.92537 0.90978 0.81485 0.77502 0.91023 0.91666 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 2.36 8.49 59.85 0.51 2.87 16 2 N -0.60 -13.74 2.49 -171.38 -0.43 -14.17 16 3 C -0.27 -7.51 9.87 -15.06 -0.15 -7.66 16 4 H 0.08 2.35 8.06 -52.48 -0.42 1.93 16 5 C 0.04 1.07 5.33 -17.43 -0.09 0.98 16 6 N -0.90 -27.22 13.97 55.49 0.78 -26.44 16 7 Si 0.89 22.19 24.96 -169.99 -4.24 17.95 16 8 H -0.29 -7.08 6.70 56.52 0.38 -6.70 16 9 H -0.30 -7.71 7.11 56.52 0.40 -7.31 16 10 H -0.27 -6.49 7.11 56.52 0.40 -6.09 16 11 C 0.17 3.23 3.44 -66.10 -0.23 3.00 16 12 H 0.09 1.65 7.95 -51.93 -0.41 1.24 16 13 C -0.16 -2.49 6.60 -24.58 -0.16 -2.65 16 14 C 0.09 1.18 4.50 -2.53 -0.01 1.17 16 15 N -0.60 -8.92 2.58 -170.53 -0.44 -9.36 16 16 C 0.54 7.99 5.75 -10.99 -0.06 7.93 16 17 O -0.54 -9.80 16.31 5.56 0.09 -9.71 16 18 C 0.00 -0.01 0.73 -156.81 -0.11 -0.13 16 19 C -0.15 -1.21 8.22 37.16 0.31 -0.90 16 20 C -0.12 -1.21 7.75 37.16 0.29 -0.93 16 21 C -0.02 -0.17 4.14 -81.60 -0.34 -0.51 16 22 C 0.00 -0.06 8.81 -17.81 -0.16 -0.22 16 23 N -0.49 -6.52 11.25 -14.66 -0.16 -6.69 16 24 C 0.18 1.63 13.04 -90.37 -1.18 0.45 16 25 N -0.56 -4.19 6.12 -10.30 -0.06 -4.25 16 26 H 0.42 1.63 8.96 -40.82 -0.37 1.26 16 27 C 0.09 1.54 6.51 -3.07 -0.02 1.52 16 28 H 0.02 0.41 7.98 -51.93 -0.41 -0.01 16 29 H 0.04 1.01 3.10 -51.92 -0.16 0.84 16 30 H 0.04 0.72 6.00 -51.93 -0.31 0.41 16 31 H 0.26 7.58 8.31 -40.82 -0.34 7.24 16 32 H 0.08 1.34 6.03 -51.93 -0.31 1.03 16 33 H 0.08 1.23 8.14 -51.93 -0.42 0.81 16 34 H 0.07 0.74 7.27 -51.93 -0.38 0.36 16 35 H 0.08 0.97 4.44 -51.93 -0.23 0.74 16 36 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 37 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 38 H 0.07 0.63 5.02 -51.94 -0.26 0.37 16 39 H 0.07 0.78 8.12 -51.93 -0.42 0.36 16 40 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 41 H 0.07 0.72 8.08 -51.93 -0.42 0.30 16 42 H 0.17 2.63 7.04 -52.48 -0.37 2.26 16 43 H 0.21 0.97 8.06 -52.49 -0.42 0.54 16 44 H 0.07 1.38 7.06 -51.93 -0.37 1.01 16 45 H 0.06 1.16 8.14 -51.93 -0.42 0.74 16 LS Contribution 343.97 15.07 5.18 5.18 Total: -1.00 -33.96 343.97 -7.24 -41.21 By element: Atomic # 1 Polarization: 7.91 SS G_CDS: -6.54 Total: 1.37 kcal Atomic # 6 Polarization: 6.33 SS G_CDS: -1.41 Total: 4.92 kcal Atomic # 7 Polarization: -60.59 SS G_CDS: -0.32 Total: -60.91 kcal Atomic # 8 Polarization: -9.80 SS G_CDS: 0.09 Total: -9.71 kcal Atomic # 14 Polarization: 22.19 SS G_CDS: -4.24 Total: 17.95 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -33.96 -7.24 -41.21 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000972730583.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.602 kcal (2) G-P(sol) polarization free energy of solvation -33.964 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 72.637 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.242 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.206 kcal (6) G-S(sol) free energy of system = (1) + (5) 65.395 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds