Wall clock time and date at job start Tue Mar 31 2020 03:57:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.36933 * 120.00030 * 2 1 4 4 H 1.08000 * 120.00070 * 201.04310 * 3 2 1 5 5 C 1.38815 * 119.99743 * 21.04190 * 3 2 1 6 6 N 1.31614 * 120.00158 * 11.07910 * 5 3 2 7 7 Si 1.86804 * 119.99810 * 191.07651 * 5 3 2 8 8 H 1.48501 * 109.46996 * 359.97438 * 7 5 3 9 9 H 1.48499 * 109.47467 * 120.00151 * 7 5 3 10 10 H 1.48506 * 109.46977 * 240.00101 * 7 5 3 11 11 C 1.46499 * 119.99778 * 180.02562 * 2 1 3 12 12 H 1.09003 * 110.63861 * 178.31300 * 11 2 1 13 13 C 1.55162 * 110.71834 * 301.44928 * 11 2 1 14 14 C 1.54912 * 101.57818 * 154.04723 * 13 11 2 15 15 N 1.47417 * 104.83389 * 322.98760 * 14 13 11 16 16 C 1.34779 * 125.65307 * 204.09425 * 15 14 13 17 17 O 1.21280 * 120.00444 * 174.68895 * 16 15 14 18 18 C 1.50704 * 119.99541 * 354.69302 * 16 15 14 19 19 C 1.53002 * 109.46955 * 305.49127 * 18 16 15 20 20 C 1.52999 * 109.47175 * 185.48839 * 18 16 15 21 21 C 1.50699 * 109.47045 * 65.48882 * 18 16 15 22 22 C 1.34666 * 126.59324 * 8.86359 * 21 18 16 23 23 N 1.34133 * 108.02013 * 180.27943 * 22 21 18 24 24 C 1.30501 * 109.25577 * 359.73597 * 23 22 21 25 25 N 1.35051 * 108.69928 * 359.97438 * 24 23 22 26 26 H 0.97004 * 126.39294 * 180.02562 * 25 24 23 27 27 C 1.47023 * 108.70227 * 24.35901 * 15 14 13 28 28 H 1.09006 * 109.47297 * 275.39724 * 1 2 3 29 29 H 1.09003 * 109.47520 * 35.39076 * 1 2 3 30 30 H 1.09000 * 109.47739 * 155.39455 * 1 2 3 31 31 H 0.97004 * 120.00073 * 179.97438 * 6 5 3 32 32 H 1.08999 * 111.00382 * 35.97276 * 13 11 2 33 33 H 1.08998 * 111.00118 * 272.11670 * 13 11 2 34 34 H 1.09004 * 110.36163 * 204.15479 * 14 13 11 35 35 H 1.08998 * 110.36757 * 81.83139 * 14 13 11 36 36 H 1.09001 * 109.46862 * 187.87955 * 19 18 16 37 37 H 1.09004 * 109.47141 * 307.87585 * 19 18 16 38 38 H 1.08993 * 109.47437 * 67.87476 * 19 18 16 39 39 H 1.08996 * 109.47301 * 300.00042 * 20 18 16 40 40 H 1.09002 * 109.46937 * 59.99898 * 20 18 16 41 41 H 1.08991 * 109.47195 * 179.97438 * 20 18 16 42 42 H 1.07993 * 125.99518 * 359.97438 * 22 21 18 43 43 H 1.08001 * 125.64873 * 180.02562 * 24 23 22 44 44 H 1.09002 * 109.88599 * 118.13212 * 27 15 14 45 45 H 1.08997 * 109.88389 * 239.29334 * 27 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 3.1756 1.2171 -0.3358 5 6 1.5250 2.3479 0.4317 6 7 0.3605 2.2816 1.0415 7 14 2.3371 4.0059 0.1470 8 1 3.6315 3.8093 -0.5538 9 1 1.4479 4.8566 -0.6842 10 1 2.5779 4.6700 1.4533 11 6 2.1974 -1.2688 -0.0006 12 1 3.2726 -1.0917 -0.0305 13 6 1.8161 -2.1233 1.2371 14 6 2.1053 -3.5568 0.7262 15 7 1.6992 -3.5416 -0.6908 16 6 1.3358 -4.6182 -1.4155 17 8 0.9275 -4.4768 -2.5488 18 6 1.4367 -5.9979 -0.8176 19 6 2.8614 -6.2311 -0.3108 20 6 1.0972 -7.0417 -1.8835 21 6 0.4688 -6.1196 0.3310 22 6 -0.4830 -5.2317 0.6763 23 7 -1.1233 -5.7079 1.7544 24 6 -0.6081 -6.8600 2.0869 25 7 0.3856 -7.1558 1.2216 26 1 0.9399 -7.9518 1.2320 27 6 1.7625 -2.1581 -1.1844 28 1 -0.3634 0.0967 1.0232 29 1 -0.3634 0.8378 -0.5952 30 1 -0.3634 -0.9343 -0.4279 31 1 -0.0758 3.0936 1.3435 32 1 0.7617 -2.0023 1.4856 33 1 2.4478 -1.8779 2.0908 34 1 1.5138 -4.2842 1.2825 35 1 3.1677 -3.7838 0.8141 36 1 2.9732 -7.2720 -0.0072 37 1 3.5715 -6.0066 -1.1068 38 1 3.0545 -5.5809 0.5424 39 1 0.0823 -6.8756 -2.2445 40 1 1.7973 -6.9537 -2.7142 41 1 1.1706 -8.0396 -1.4512 42 1 -0.6908 -4.2974 0.1762 43 1 -0.9247 -7.4752 2.9161 44 1 2.4907 -2.0856 -1.9923 45 1 0.7802 -1.8458 -1.5390 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000972730584.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:57:16 Heat of formation + Delta-G solvation = 59.951231 kcal Electronic energy + Delta-G solvation = -26654.948083 eV Core-core repulsion = 23095.721023 eV Total energy + Delta-G solvation = -3559.227059 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 306.180 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -42.44291 -40.01463 -37.61340 -35.38871 -34.74163 -32.49189 -31.52396 -29.73851 -29.08355 -28.20723 -27.14192 -26.02152 -24.59656 -22.82112 -22.27255 -21.41458 -21.06203 -19.33972 -19.07645 -18.09489 -16.99567 -16.42146 -15.82001 -15.48469 -15.13423 -14.94651 -14.54173 -14.18268 -13.80447 -13.54662 -13.38596 -13.31211 -13.11088 -12.77697 -12.52569 -12.49861 -12.29839 -12.01437 -11.88621 -11.63612 -11.58862 -11.14467 -10.92241 -10.74161 -10.54208 -10.39959 -10.20859 -10.11766 -10.07601 -9.86338 -9.82991 -9.61814 -8.56595 -8.47759 -8.30187 -6.80507 -5.72545 -3.18993 1.84856 2.54098 3.00173 3.07178 3.21306 3.38306 3.45615 3.47325 4.28751 4.35945 4.48436 4.65328 4.67711 4.82411 5.08717 5.19584 5.24814 5.31113 5.35418 5.42765 5.48365 5.49071 5.54616 5.61412 5.65566 5.79148 5.83337 5.95745 5.99840 6.04411 6.05159 6.32380 6.43676 6.59444 6.60082 6.67212 6.86203 6.91775 7.17698 7.44099 7.73323 7.78187 7.83643 7.93984 8.29755 8.37923 9.22246 9.84627 10.32541 11.31963 Molecular weight = 306.18amu Principal moments of inertia in cm(-1) A = 0.023285 B = 0.003819 C = 0.003561 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1202.193636 B = 7329.489504 C = 7860.001740 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.162 3.838 2 N -0.587 5.587 3 C -0.258 4.258 4 H 0.071 0.929 5 C 0.004 3.996 6 N -0.906 5.906 7 Si 0.906 3.094 8 H -0.278 1.278 9 H -0.289 1.289 10 H -0.290 1.290 11 C 0.174 3.826 12 H 0.077 0.923 13 C -0.150 4.150 14 C 0.092 3.908 15 N -0.602 5.602 16 C 0.541 3.459 17 O -0.538 6.538 18 C -0.001 4.001 19 C -0.151 4.151 20 C -0.125 4.125 21 C -0.015 4.015 22 C -0.004 4.004 23 N -0.486 5.486 24 C 0.183 3.817 25 N -0.563 5.563 26 H 0.417 0.583 27 C 0.085 3.915 28 H 0.032 0.968 29 H 0.045 0.955 30 H 0.000 1.000 31 H 0.252 0.748 32 H 0.077 0.923 33 H 0.076 0.924 34 H 0.077 0.923 35 H 0.063 0.937 36 H 0.061 0.939 37 H 0.070 0.930 38 H 0.075 0.925 39 H 0.068 0.932 40 H 0.069 0.931 41 H 0.055 0.945 42 H 0.167 0.833 43 H 0.209 0.791 44 H 0.061 0.939 45 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.013 -22.092 1.284 22.490 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 N -0.308 5.308 3 C -0.388 4.388 4 H 0.089 0.911 5 C -0.195 4.195 6 N -0.551 5.551 7 Si 0.736 3.264 8 H -0.203 1.203 9 H -0.216 1.216 10 H -0.217 1.217 11 C 0.063 3.937 12 H 0.095 0.905 13 C -0.190 4.190 14 C -0.031 4.031 15 N -0.335 5.335 16 C 0.327 3.673 17 O -0.415 6.415 18 C -0.006 4.006 19 C -0.209 4.209 20 C -0.183 4.183 21 C -0.130 4.130 22 C -0.152 4.152 23 N -0.204 5.204 24 C -0.100 4.100 25 N -0.167 5.167 26 H 0.255 0.745 27 C -0.039 4.039 28 H 0.050 0.950 29 H 0.064 0.936 30 H 0.019 0.981 31 H 0.063 0.937 32 H 0.096 0.904 33 H 0.094 0.906 34 H 0.095 0.905 35 H 0.081 0.919 36 H 0.080 0.920 37 H 0.089 0.911 38 H 0.094 0.906 39 H 0.088 0.912 40 H 0.088 0.912 41 H 0.074 0.926 42 H 0.185 0.815 43 H 0.225 0.775 44 H 0.079 0.921 45 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 2.962 -21.432 1.096 21.663 hybrid contribution 1.248 0.115 -0.303 1.289 sum 4.209 -21.317 0.794 21.743 Atomic orbital electron populations 1.20815 0.82203 0.95571 0.99654 1.43880 1.01992 0.99815 1.85068 1.19278 0.97245 0.85033 1.37218 0.91144 1.24995 0.97461 0.98445 0.98563 1.70095 1.16721 1.26810 1.41442 0.86163 0.78653 0.84179 0.77389 1.20336 1.21608 1.21740 1.21268 0.96184 0.85996 0.90209 0.90515 1.23381 1.03051 0.92433 1.00134 1.22649 0.99122 0.99913 0.81440 1.48413 1.65374 1.07500 1.12224 1.19589 0.77626 0.84624 0.85454 1.90706 1.46028 1.85929 1.18803 1.19191 0.94303 0.94700 0.92383 1.22088 0.93704 1.02344 1.02735 1.21684 1.03582 0.95695 0.97299 1.20655 1.03454 0.92053 0.96858 1.22209 0.95549 1.00814 0.96658 1.70357 1.27361 1.08824 1.13899 1.25026 0.90716 0.96445 0.97818 1.43124 1.30118 1.18996 1.24477 0.74531 1.22793 1.02475 0.79670 0.98934 0.94976 0.93622 0.98110 0.93743 0.90430 0.90566 0.90490 0.91885 0.91977 0.91126 0.90640 0.91247 0.91178 0.92562 0.81549 0.77502 0.92100 0.90693 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.16 4.00 7.66 59.85 0.46 4.46 16 2 N -0.59 -14.33 2.94 -171.38 -0.50 -14.84 16 3 C -0.26 -6.94 9.65 -15.06 -0.15 -7.08 16 4 H 0.07 1.84 7.81 -52.49 -0.41 1.43 16 5 C 0.00 0.10 5.15 -17.43 -0.09 0.01 16 6 N -0.91 -26.18 10.49 55.49 0.58 -25.59 16 7 Si 0.91 21.66 29.57 -169.99 -5.03 16.64 16 8 H -0.28 -6.47 7.11 56.52 0.40 -6.06 16 9 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 10 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 11 C 0.17 3.40 3.42 -66.09 -0.23 3.18 16 12 H 0.08 1.47 7.92 -51.93 -0.41 1.06 16 13 C -0.15 -2.56 6.65 -24.58 -0.16 -2.72 16 14 C 0.09 1.26 4.68 -2.53 -0.01 1.25 16 15 N -0.60 -9.37 2.99 -170.52 -0.51 -9.88 16 16 C 0.54 8.35 5.53 -10.98 -0.06 8.29 16 17 O -0.54 -10.20 16.32 5.56 0.09 -10.11 16 18 C 0.00 -0.01 0.73 -156.81 -0.11 -0.13 16 19 C -0.15 -1.29 8.08 37.16 0.30 -0.99 16 20 C -0.12 -1.27 7.76 37.16 0.29 -0.98 16 21 C -0.01 -0.17 4.25 -81.60 -0.35 -0.51 16 22 C 0.00 -0.06 8.98 -17.81 -0.16 -0.22 16 23 N -0.49 -6.81 11.25 -14.66 -0.16 -6.97 16 24 C 0.18 1.71 13.04 -90.37 -1.18 0.53 16 25 N -0.56 -4.49 6.12 -10.30 -0.06 -4.55 16 26 H 0.42 1.82 8.96 -40.82 -0.37 1.45 16 27 C 0.09 1.56 6.41 -3.06 -0.02 1.54 16 28 H 0.03 0.86 7.38 -51.93 -0.38 0.47 16 29 H 0.05 1.23 7.17 -51.93 -0.37 0.86 16 30 H 0.00 0.01 6.31 -51.93 -0.33 -0.32 16 31 H 0.25 7.09 8.31 -40.82 -0.34 6.75 16 32 H 0.08 1.49 7.28 -51.93 -0.38 1.11 16 33 H 0.08 1.26 8.14 -51.93 -0.42 0.84 16 34 H 0.08 1.03 4.65 -51.93 -0.24 0.78 16 35 H 0.06 0.75 7.01 -51.93 -0.36 0.38 16 36 H 0.06 0.37 8.13 -51.93 -0.42 -0.05 16 37 H 0.07 0.62 8.13 -51.93 -0.42 0.20 16 38 H 0.07 0.67 4.97 -51.93 -0.26 0.41 16 39 H 0.07 0.83 8.04 -51.93 -0.42 0.41 16 40 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 41 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 42 H 0.17 2.77 7.35 -52.49 -0.39 2.39 16 43 H 0.21 1.05 8.06 -52.49 -0.42 0.63 16 44 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 45 H 0.07 1.54 6.15 -51.93 -0.32 1.22 16 LS Contribution 349.19 15.07 5.26 5.26 Total: -1.00 -33.14 349.19 -8.53 -41.67 By element: Atomic # 1 Polarization: 8.47 SS G_CDS: -6.73 Total: 1.74 kcal Atomic # 6 Polarization: 8.10 SS G_CDS: -1.47 Total: 6.63 kcal Atomic # 7 Polarization: -61.17 SS G_CDS: -0.66 Total: -61.83 kcal Atomic # 8 Polarization: -10.20 SS G_CDS: 0.09 Total: -10.11 kcal Atomic # 14 Polarization: 21.66 SS G_CDS: -5.03 Total: 16.64 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -33.14 -8.53 -41.67 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000972730584.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.624 kcal (2) G-P(sol) polarization free energy of solvation -33.142 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 68.482 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.531 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.672 kcal (6) G-S(sol) free energy of system = (1) + (5) 59.951 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds