Wall clock time and date at job start Tue Mar 31 2020 03:51:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 N 1.30855 * 125.41905 * 2 1 4 4 C 1.33320 * 109.68239 * 179.73840 * 3 2 1 5 5 C 1.36667 * 107.78755 * 0.38433 * 4 3 2 6 6 C 1.46762 * 126.84021 * 179.89289 * 5 4 3 7 7 O 1.21683 * 119.99369 * 185.00348 * 6 5 4 8 8 N 1.34778 * 120.00483 * 5.00668 * 6 5 4 9 9 C 1.46491 * 119.99895 * 174.67405 * 8 6 5 10 10 H 1.09000 * 110.64285 * 36.68950 * 9 8 6 11 11 C 1.54330 * 110.72387 * 273.54725 * 9 8 6 12 12 N 1.47020 * 107.26751 * 263.83230 * 11 9 8 13 13 C 1.36938 * 125.64462 * 181.07853 * 12 11 9 14 14 H 1.08003 * 120.00153 * 179.97438 * 13 12 11 15 15 C 1.38810 * 120.00005 * 359.97207 * 13 12 11 16 16 N 1.31615 * 120.00271 * 0.02562 * 15 13 12 17 17 Si 1.86803 * 119.99883 * 179.97438 * 15 13 12 18 18 H 1.48502 * 109.47301 * 60.00453 * 17 15 13 19 19 H 1.48502 * 109.47154 * 180.02562 * 17 15 13 20 20 H 1.48502 * 109.47261 * 300.00197 * 17 15 13 21 21 C 1.47422 * 108.70665 * 1.05473 * 12 11 9 22 22 C 1.54904 * 104.83373 * 335.87455 * 21 12 11 23 23 C 1.52998 * 111.00789 * 155.08062 * 22 21 12 24 24 C 1.53004 * 111.00308 * 278.93719 * 22 21 12 25 25 N 1.34495 * 125.41551 * 179.97438 * 2 1 3 26 26 C 1.46499 * 126.47441 * 0.03990 * 25 2 1 27 27 H 1.08996 * 109.47420 * 270.02452 * 1 2 3 28 28 H 1.09005 * 109.46790 * 30.02487 * 1 2 3 29 29 H 1.08998 * 109.46900 * 150.02211 * 1 2 3 30 30 H 1.08005 * 126.10501 * 180.27111 * 4 3 2 31 31 H 0.96997 * 119.99524 * 354.67827 * 8 6 5 32 32 H 1.08998 * 109.88098 * 144.41105 * 11 9 8 33 33 H 1.08999 * 109.87882 * 23.25057 * 11 9 8 34 34 H 0.96997 * 120.00238 * 180.02562 * 16 15 13 35 35 H 1.09001 * 110.36364 * 94.70948 * 21 12 11 36 36 H 1.09003 * 110.36787 * 217.03249 * 21 12 11 37 37 H 1.09000 * 109.46547 * 61.45537 * 23 22 21 38 38 H 1.09004 * 109.47130 * 181.45358 * 23 22 21 39 39 H 1.08993 * 109.47306 * 301.45406 * 23 22 21 40 40 H 1.08998 * 109.47383 * 58.54235 * 24 22 21 41 41 H 1.08999 * 109.47226 * 178.54861 * 24 22 21 42 42 H 1.09000 * 109.46686 * 298.53926 * 24 22 21 43 43 H 1.08997 * 109.47469 * 273.35569 * 26 25 2 44 44 H 1.09002 * 109.46825 * 33.35540 * 26 25 2 45 45 H 1.08995 * 109.47250 * 153.35353 * 26 25 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2654 1.0664 0.0000 4 6 3.5486 0.7048 0.0057 5 6 3.5976 -0.6610 0.0008 6 6 4.8029 -1.4983 0.0021 7 8 4.7038 -2.7072 -0.0947 8 7 6.0194 -0.9284 0.1106 9 6 7.2138 -1.7682 0.2293 10 1 7.1162 -2.6640 -0.3840 11 6 7.4742 -2.1419 1.7039 12 7 8.4579 -1.1841 2.2296 13 6 8.9726 -1.1843 3.4986 14 1 9.6939 -0.4347 3.7890 15 6 8.5673 -2.1479 4.4118 16 7 7.6886 -3.0618 4.0579 17 14 9.2699 -2.1487 6.1426 18 1 8.9439 -0.8626 6.8098 19 1 8.6805 -3.2712 6.9157 20 1 10.7444 -2.3130 6.0782 21 6 8.7988 -0.2237 1.1643 22 6 8.4869 -0.9698 -0.1569 23 6 8.1928 0.0175 -1.2881 24 6 9.6306 -1.9121 -0.5377 25 7 2.2865 -1.0961 0.0005 26 6 1.8311 -2.4885 0.0003 27 1 -0.3634 0.0004 1.0276 28 1 -0.3633 0.8898 -0.5143 29 1 -0.3633 -0.8902 -0.5135 30 1 4.3979 1.3721 0.0113 31 1 6.1040 0.0379 0.1100 32 1 7.8733 -3.1544 1.7648 33 1 6.5474 -2.0717 2.2733 34 1 7.4051 -3.7349 4.6962 35 1 8.1825 0.6713 1.2491 36 1 9.8562 0.0367 1.2125 37 1 9.0693 0.6415 -1.4625 38 1 7.9519 -0.5331 -2.1974 39 1 7.3479 0.6474 -1.0101 40 1 9.7911 -2.6317 0.2650 41 1 9.3745 -2.4422 -1.4551 42 1 10.5410 -1.3336 -0.6946 43 1 1.6604 -2.8151 1.0261 44 1 0.9026 -2.5670 -0.5653 45 1 2.5914 -3.1194 -0.4601 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000974957607.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:51:18 Heat of formation + Delta-G solvation = 50.594054 kcal Electronic energy + Delta-G solvation = -26267.546796 eV Core-core repulsion = 22707.913979 eV Total energy + Delta-G solvation = -3559.632817 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 306.180 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -42.22690 -39.60726 -37.76623 -34.36513 -33.74987 -33.00255 -31.88921 -30.69890 -28.65403 -27.53450 -26.94407 -26.37110 -25.61747 -23.64443 -22.54001 -20.69181 -19.93922 -19.74422 -18.76029 -17.46572 -16.70505 -16.16391 -16.08239 -15.65131 -14.73183 -14.50980 -14.07526 -14.03064 -13.84020 -13.66156 -13.41562 -13.28004 -13.23549 -12.90187 -12.53928 -12.47076 -12.43419 -12.05906 -12.00643 -11.67629 -11.40570 -11.09036 -10.99959 -10.75814 -10.41404 -10.31337 -10.21812 -10.00525 -9.88862 -9.72061 -9.64057 -9.57439 -8.66010 -8.58685 -8.31799 -6.82143 -5.68517 -3.03080 1.41137 2.50219 2.84303 3.41522 3.45736 3.47301 3.52007 3.66530 4.26742 4.50987 4.68018 4.73749 4.91131 5.01274 5.11303 5.25441 5.27050 5.29724 5.31291 5.44125 5.52606 5.54155 5.62672 5.65133 5.79769 5.91227 6.02602 6.12323 6.16063 6.21103 6.24977 6.38524 6.51167 6.57916 6.61623 6.66782 6.70919 6.93860 7.02778 7.54288 7.62613 7.78391 7.86250 7.94529 8.26259 8.50907 9.22771 9.83685 10.48876 11.42284 Molecular weight = 306.18amu Principal moments of inertia in cm(-1) A = 0.013892 B = 0.004444 C = 0.003815 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2015.056933 B = 6298.638316 C = 7337.400031 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 C 0.217 3.783 3 N -0.495 5.495 4 C 0.034 3.966 5 C -0.076 4.076 6 C 0.593 3.407 7 O -0.548 6.548 8 N -0.695 5.695 9 C 0.126 3.874 10 H 0.090 0.910 11 C 0.176 3.824 12 N -0.602 5.602 13 C -0.230 4.230 14 H 0.077 0.923 15 C -0.006 4.006 16 N -0.920 5.920 17 Si 0.911 3.089 18 H -0.286 1.286 19 H -0.291 1.291 20 H -0.285 1.285 21 C 0.143 3.857 22 C -0.089 4.089 23 C -0.132 4.132 24 C -0.125 4.125 25 N -0.423 5.423 26 C 0.063 3.937 27 H 0.083 0.917 28 H 0.092 0.908 29 H 0.074 0.926 30 H 0.177 0.823 31 H 0.397 0.603 32 H 0.055 0.945 33 H 0.047 0.953 34 H 0.253 0.747 35 H 0.016 0.984 36 H 0.042 0.958 37 H 0.056 0.944 38 H 0.053 0.947 39 H 0.051 0.949 40 H 0.068 0.932 41 H 0.047 0.953 42 H 0.054 0.946 43 H 0.080 0.920 44 H 0.083 0.917 45 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.836 4.577 -12.356 16.443 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.045 4.045 3 N -0.214 5.214 4 C -0.120 4.120 5 C -0.193 4.193 6 C 0.380 3.620 7 O -0.427 6.427 8 N -0.345 5.345 9 C 0.021 3.979 10 H 0.108 0.892 11 C 0.051 3.949 12 N -0.329 5.329 13 C -0.358 4.358 14 H 0.095 0.905 15 C -0.203 4.203 16 N -0.567 5.567 17 Si 0.741 3.259 18 H -0.212 1.212 19 H -0.217 1.217 20 H -0.212 1.212 21 C 0.017 3.983 22 C -0.090 4.090 23 C -0.190 4.190 24 C -0.183 4.183 25 N -0.104 5.104 26 C -0.079 4.079 27 H 0.102 0.898 28 H 0.110 0.890 29 H 0.093 0.907 30 H 0.194 0.806 31 H 0.233 0.767 32 H 0.073 0.927 33 H 0.065 0.935 34 H 0.063 0.937 35 H 0.034 0.966 36 H 0.060 0.940 37 H 0.075 0.925 38 H 0.072 0.928 39 H 0.070 0.930 40 H 0.088 0.912 41 H 0.066 0.934 42 H 0.073 0.927 43 H 0.099 0.901 44 H 0.102 0.898 45 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -10.265 4.163 -12.192 16.473 hybrid contribution 0.679 -0.399 1.143 1.388 sum -9.586 3.764 -11.050 15.104 Atomic orbital electron populations 1.20236 0.84582 1.04070 1.03798 1.23371 0.95832 0.81307 1.03952 1.70061 1.02170 1.28127 1.21048 1.22577 0.95064 0.91355 1.02990 1.20882 0.85434 0.94958 1.18026 1.16678 0.82087 0.86559 0.76722 1.90757 1.86647 1.14110 1.51165 1.45684 1.05338 1.10397 1.73106 1.22529 0.81897 0.92787 1.00646 0.89232 1.21526 0.93627 0.93509 0.86270 1.44417 1.48768 1.31023 1.08662 1.18987 1.19656 1.11089 0.86068 0.90483 1.24794 0.99315 0.97815 0.98359 1.69945 1.34541 1.18072 1.34170 0.86225 0.78371 0.77009 0.84289 1.21231 1.21669 1.21168 1.21642 0.97908 0.92079 0.86682 1.22014 0.94899 0.96287 0.95837 1.21693 1.01020 0.98626 0.97660 1.21591 0.96492 0.99131 1.01051 1.45039 1.05208 1.08283 1.51832 1.22321 1.02235 0.79052 1.04246 0.89832 0.88951 0.90707 0.80588 0.76661 0.92737 0.93466 0.93691 0.96593 0.93996 0.92474 0.92772 0.93030 0.91249 0.93364 0.92737 0.90099 0.89807 0.87183 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.55 10.18 36.01 0.37 -0.18 16 2 C 0.22 2.82 7.88 -155.61 -1.23 1.60 16 3 N -0.49 -7.44 11.20 -10.58 -0.12 -7.56 16 4 C 0.03 0.51 11.37 -17.47 -0.20 0.31 16 5 C -0.08 -1.22 6.91 -82.14 -0.57 -1.78 16 6 C 0.59 10.66 7.78 -12.82 -0.10 10.56 16 7 O -0.55 -11.23 14.49 5.20 0.08 -11.16 16 8 N -0.69 -11.74 4.53 -53.31 -0.24 -11.98 16 9 C 0.13 2.37 2.55 -66.10 -0.17 2.20 16 10 H 0.09 1.74 7.53 -51.93 -0.39 1.35 16 11 C 0.18 4.29 4.73 -3.06 -0.01 4.28 16 12 N -0.60 -14.94 3.38 -170.07 -0.58 -15.51 16 13 C -0.23 -6.34 10.28 -15.06 -0.15 -6.49 16 14 H 0.08 2.05 7.83 -52.48 -0.41 1.63 16 15 C -0.01 -0.18 5.49 -17.43 -0.10 -0.28 16 16 N -0.92 -27.41 10.31 55.49 0.57 -26.84 16 17 Si 0.91 22.27 29.55 -169.99 -5.02 17.25 16 18 H -0.29 -6.91 7.11 56.52 0.40 -6.50 16 19 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 20 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 21 C 0.14 2.80 6.14 -2.53 -0.02 2.78 16 22 C -0.09 -1.45 0.83 -152.36 -0.13 -1.57 16 23 C -0.13 -1.68 8.35 37.16 0.31 -1.37 16 24 C -0.13 -1.95 8.61 37.16 0.32 -1.63 16 25 N -0.42 -5.93 3.17 -117.28 -0.37 -6.30 16 26 C 0.06 0.71 10.57 59.85 0.63 1.34 16 27 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 28 H 0.09 0.66 8.14 -51.93 -0.42 0.24 16 29 H 0.07 0.43 7.10 -51.93 -0.37 0.06 16 30 H 0.18 2.13 7.46 -52.48 -0.39 1.74 16 31 H 0.40 5.85 5.77 -40.82 -0.24 5.61 16 32 H 0.05 1.50 7.38 -51.93 -0.38 1.12 16 33 H 0.05 1.33 7.41 -51.93 -0.38 0.95 16 34 H 0.25 7.40 8.31 -40.82 -0.34 7.06 16 35 H 0.02 0.31 8.04 -51.93 -0.42 -0.11 16 36 H 0.04 0.81 8.05 -51.93 -0.42 0.39 16 37 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 38 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 39 H 0.05 0.61 6.16 -51.93 -0.32 0.29 16 40 H 0.07 1.28 7.81 -51.93 -0.41 0.88 16 41 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 42 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 43 H 0.08 0.87 8.14 -51.93 -0.42 0.45 16 44 H 0.08 0.62 7.12 -51.93 -0.37 0.25 16 45 H 0.11 1.44 6.22 -51.93 -0.32 1.12 16 LS Contribution 358.82 15.07 5.41 5.41 Total: -1.00 -34.22 358.82 -8.23 -42.45 By element: Atomic # 1 Polarization: 11.40 SS G_CDS: -6.91 Total: 4.48 kcal Atomic # 6 Polarization: 10.80 SS G_CDS: -1.04 Total: 9.77 kcal Atomic # 7 Polarization: -67.45 SS G_CDS: -0.73 Total: -68.19 kcal Atomic # 8 Polarization: -11.23 SS G_CDS: 0.08 Total: -11.16 kcal Atomic # 14 Polarization: 22.27 SS G_CDS: -5.02 Total: 17.25 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -34.22 -8.23 -42.45 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000974957607.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.039 kcal (2) G-P(sol) polarization free energy of solvation -34.217 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 58.822 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.228 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.445 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.594 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds