Wall clock time and date at job start Tue Mar 31 2020 03:51:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 N 1.30855 * 125.41905 * 2 1 4 4 C 1.33320 * 109.68239 * 179.73840 * 3 2 1 5 5 C 1.36667 * 107.78755 * 0.38433 * 4 3 2 6 6 C 1.46762 * 126.84021 * 179.89289 * 5 4 3 7 7 O 1.21683 * 119.99369 * 185.00348 * 6 5 4 8 8 N 1.34778 * 120.00483 * 5.00668 * 6 5 4 9 9 C 1.46491 * 119.99895 * 174.67405 * 8 6 5 10 10 H 1.09000 * 110.64285 * 36.68950 * 9 8 6 11 11 C 1.54330 * 110.72387 * 273.54725 * 9 8 6 12 12 N 1.47020 * 107.26751 * 263.83230 * 11 9 8 13 13 C 1.36938 * 125.64462 * 181.07853 * 12 11 9 14 14 H 1.08003 * 120.00153 * 179.97438 * 13 12 11 15 15 C 1.38810 * 120.00005 * 359.97207 * 13 12 11 16 16 N 1.31615 * 120.00271 * 0.02562 * 15 13 12 17 17 Si 1.86803 * 119.99883 * 179.97438 * 15 13 12 18 18 H 1.48502 * 109.47301 * 60.00453 * 17 15 13 19 19 H 1.48502 * 109.47154 * 180.02562 * 17 15 13 20 20 H 1.48502 * 109.47261 * 300.00197 * 17 15 13 21 21 C 1.47422 * 108.70665 * 1.05473 * 12 11 9 22 22 C 1.54904 * 104.83373 * 335.87455 * 21 12 11 23 23 C 1.52998 * 111.00789 * 155.08062 * 22 21 12 24 24 C 1.53004 * 111.00308 * 278.93719 * 22 21 12 25 25 N 1.34495 * 125.41551 * 179.97438 * 2 1 3 26 26 C 1.46499 * 126.47441 * 0.03990 * 25 2 1 27 27 H 1.08996 * 109.47420 * 270.02452 * 1 2 3 28 28 H 1.09005 * 109.46790 * 30.02487 * 1 2 3 29 29 H 1.08998 * 109.46900 * 150.02211 * 1 2 3 30 30 H 1.08005 * 126.10501 * 180.27111 * 4 3 2 31 31 H 0.96997 * 119.99524 * 354.67827 * 8 6 5 32 32 H 1.08998 * 109.88098 * 144.41105 * 11 9 8 33 33 H 1.08999 * 109.87882 * 23.25057 * 11 9 8 34 34 H 0.96997 * 120.00238 * 180.02562 * 16 15 13 35 35 H 1.09001 * 110.36364 * 94.70948 * 21 12 11 36 36 H 1.09003 * 110.36787 * 217.03249 * 21 12 11 37 37 H 1.09000 * 109.46547 * 61.45537 * 23 22 21 38 38 H 1.09004 * 109.47130 * 181.45358 * 23 22 21 39 39 H 1.08993 * 109.47306 * 301.45406 * 23 22 21 40 40 H 1.08998 * 109.47383 * 58.54235 * 24 22 21 41 41 H 1.08999 * 109.47226 * 178.54861 * 24 22 21 42 42 H 1.09000 * 109.46686 * 298.53926 * 24 22 21 43 43 H 1.08997 * 109.47469 * 273.35569 * 26 25 2 44 44 H 1.09002 * 109.46825 * 33.35540 * 26 25 2 45 45 H 1.08995 * 109.47250 * 153.35353 * 26 25 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2654 1.0664 0.0000 4 6 3.5486 0.7048 0.0057 5 6 3.5976 -0.6610 0.0008 6 6 4.8029 -1.4983 0.0021 7 8 4.7038 -2.7072 -0.0947 8 7 6.0194 -0.9284 0.1106 9 6 7.2138 -1.7682 0.2293 10 1 7.1162 -2.6640 -0.3840 11 6 7.4742 -2.1419 1.7039 12 7 8.4579 -1.1841 2.2296 13 6 8.9726 -1.1843 3.4986 14 1 9.6939 -0.4347 3.7890 15 6 8.5673 -2.1479 4.4118 16 7 7.6886 -3.0618 4.0579 17 14 9.2699 -2.1487 6.1426 18 1 8.9439 -0.8626 6.8098 19 1 8.6805 -3.2712 6.9157 20 1 10.7444 -2.3130 6.0782 21 6 8.7988 -0.2237 1.1643 22 6 8.4869 -0.9698 -0.1569 23 6 8.1928 0.0175 -1.2881 24 6 9.6306 -1.9121 -0.5377 25 7 2.2865 -1.0961 0.0005 26 6 1.8311 -2.4885 0.0003 27 1 -0.3634 0.0004 1.0276 28 1 -0.3633 0.8898 -0.5143 29 1 -0.3633 -0.8902 -0.5135 30 1 4.3979 1.3721 0.0113 31 1 6.1040 0.0379 0.1100 32 1 7.8733 -3.1544 1.7648 33 1 6.5474 -2.0717 2.2733 34 1 7.4051 -3.7349 4.6962 35 1 8.1825 0.6713 1.2491 36 1 9.8562 0.0367 1.2125 37 1 9.0693 0.6415 -1.4625 38 1 7.9519 -0.5331 -2.1974 39 1 7.3479 0.6474 -1.0101 40 1 9.7911 -2.6317 0.2650 41 1 9.3745 -2.4422 -1.4551 42 1 10.5410 -1.3336 -0.6946 43 1 1.6604 -2.8151 1.0261 44 1 0.9026 -2.5670 -0.5653 45 1 2.5914 -3.1194 -0.4601 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000974957607.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:51:18 Heat of formation + Delta-G solvation = 27.589345 kcal Electronic energy + Delta-G solvation = -26268.544355 eV Core-core repulsion = 22707.913979 eV Total energy + Delta-G solvation = -3560.630376 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 306.180 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -43.30679 -41.10334 -39.28850 -35.82532 -35.21134 -34.43253 -32.82721 -32.60984 -30.13196 -28.70348 -28.02763 -27.64554 -27.29175 -25.24269 -23.89795 -22.27056 -21.37426 -20.95424 -20.12585 -18.72979 -18.67630 -17.40649 -17.22011 -17.05513 -16.57797 -15.86330 -15.72267 -15.50295 -15.22479 -14.93991 -14.71306 -14.26043 -14.19974 -14.00985 -13.79471 -13.70348 -13.45185 -13.31306 -13.15509 -13.10533 -12.98247 -12.85315 -12.65564 -12.57488 -12.18976 -11.85683 -11.74221 -11.52604 -11.46238 -11.31365 -10.96690 -10.76692 -10.72773 -10.11307 -9.49459 -8.89133 -7.84027 -5.20247 0.24353 1.42543 1.43607 1.46963 1.53032 1.74841 2.23061 2.36171 2.49103 3.34489 3.37430 3.48743 3.64905 3.73571 3.86502 3.95239 3.96214 4.07213 4.26511 4.33622 4.39534 4.51491 4.54635 4.66531 4.72008 4.73795 4.86010 4.89332 4.96695 5.02951 5.04858 5.11511 5.17020 5.18396 5.28280 5.36074 5.42568 5.46039 5.56740 5.69555 5.72626 6.06223 6.17353 6.45851 6.84001 7.07599 7.14284 7.77943 8.42066 9.25281 Molecular weight = 306.18amu Principal moments of inertia in cm(-1) A = 0.013892 B = 0.004444 C = 0.003815 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2015.056933 B = 6298.638316 C = 7337.400031 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 C 0.228 3.772 3 N -0.523 5.523 4 C 0.043 3.957 5 C -0.112 4.112 6 C 0.591 3.409 7 O -0.583 6.583 8 N -0.686 5.686 9 C 0.140 3.860 10 H 0.082 0.918 11 C 0.195 3.805 12 N -0.620 5.620 13 C -0.237 4.237 14 H 0.087 0.913 15 C -0.069 4.069 16 N -0.955 5.955 17 Si 0.976 3.024 18 H -0.277 1.277 19 H -0.300 1.300 20 H -0.274 1.274 21 C 0.137 3.863 22 C -0.073 4.073 23 C -0.126 4.126 24 C -0.123 4.123 25 N -0.431 5.431 26 C 0.061 3.939 27 H 0.096 0.904 28 H 0.104 0.896 29 H 0.102 0.898 30 H 0.197 0.803 31 H 0.410 0.590 32 H 0.008 0.992 33 H -0.003 1.003 34 H 0.243 0.757 35 H 0.031 0.969 36 H 0.050 0.950 37 H 0.080 0.920 38 H 0.066 0.934 39 H 0.061 0.939 40 H 0.029 0.971 41 H 0.069 0.931 42 H 0.077 0.923 43 H 0.081 0.919 44 H 0.127 0.873 45 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.387 6.831 -13.842 18.605 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.034 4.034 3 N -0.242 5.242 4 C -0.112 4.112 5 C -0.228 4.228 6 C 0.379 3.621 7 O -0.464 6.464 8 N -0.337 5.337 9 C 0.035 3.965 10 H 0.100 0.900 11 C 0.069 3.931 12 N -0.346 5.346 13 C -0.366 4.366 14 H 0.105 0.895 15 C -0.261 4.261 16 N -0.604 5.604 17 Si 0.805 3.195 18 H -0.203 1.203 19 H -0.226 1.226 20 H -0.200 1.200 21 C 0.012 3.988 22 C -0.075 4.075 23 C -0.183 4.183 24 C -0.180 4.180 25 N -0.111 5.111 26 C -0.080 4.080 27 H 0.115 0.885 28 H 0.122 0.878 29 H 0.120 0.880 30 H 0.214 0.786 31 H 0.248 0.752 32 H 0.026 0.974 33 H 0.015 0.985 34 H 0.052 0.948 35 H 0.049 0.951 36 H 0.069 0.931 37 H 0.099 0.901 38 H 0.085 0.915 39 H 0.080 0.920 40 H 0.049 0.951 41 H 0.088 0.912 42 H 0.096 0.904 43 H 0.099 0.901 44 H 0.145 0.855 45 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -10.796 6.472 -13.709 18.611 hybrid contribution 0.789 -1.062 1.600 2.077 sum -10.006 5.410 -12.108 16.613 Atomic orbital electron populations 1.20515 0.80950 1.06030 1.05207 1.24369 0.97667 0.80449 1.00889 1.70128 1.02328 1.29125 1.22642 1.22977 0.95928 0.91086 1.01193 1.20684 0.85680 0.95238 1.21224 1.17038 0.82916 0.86379 0.75770 1.90735 1.87196 1.15714 1.52801 1.45481 1.04590 1.10769 1.72836 1.22135 0.84147 0.93772 0.96489 0.89996 1.21076 0.91034 0.91687 0.89351 1.44668 1.48682 1.32090 1.09185 1.19459 1.19127 1.10687 0.87365 0.89482 1.25652 1.00174 0.97917 1.02374 1.70219 1.36378 1.18894 1.34912 0.85178 0.77993 0.76763 0.79580 1.20276 1.22605 1.19954 1.21916 0.98550 0.91698 0.86622 1.21988 0.93232 0.96418 0.95819 1.21675 1.02563 0.97955 0.96127 1.21588 0.97272 0.98634 1.00543 1.45287 1.04674 1.09468 1.51703 1.22452 1.03232 0.77511 1.04792 0.88506 0.87776 0.87976 0.78592 0.75180 0.97376 0.98453 0.94792 0.95130 0.93137 0.90122 0.91457 0.91986 0.95138 0.91218 0.90443 0.90087 0.85457 0.89622 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.87 10.18 71.24 0.73 -0.15 16 2 C 0.23 5.48 7.88 138.20 1.09 6.57 16 3 N -0.52 -14.86 11.20 -187.38 -2.10 -16.96 16 4 C 0.04 1.22 11.37 84.10 0.96 2.18 16 5 C -0.11 -3.57 6.91 40.01 0.28 -3.30 16 6 C 0.59 21.84 7.78 86.47 0.67 22.51 16 7 O -0.58 -25.17 14.49 -4.29 -0.06 -25.23 16 8 N -0.69 -23.31 4.53 -440.79 -2.00 -25.31 16 9 C 0.14 5.41 2.55 46.18 0.12 5.52 16 10 H 0.08 3.31 7.53 -2.39 -0.02 3.29 16 11 C 0.19 10.09 4.73 86.73 0.41 10.50 16 12 N -0.62 -31.56 3.38 -691.99 -2.34 -33.90 16 13 C -0.24 -13.35 10.28 84.03 0.86 -12.49 16 14 H 0.09 4.60 7.83 -2.91 -0.02 4.58 16 15 C -0.07 -4.01 5.49 84.86 0.47 -3.54 16 16 N -0.95 -60.20 10.31 21.65 0.22 -59.98 16 17 Si 0.98 46.91 29.55 68.60 2.03 48.93 16 18 H -0.28 -12.77 7.11 99.48 0.71 -12.06 16 19 H -0.30 -14.68 7.11 99.48 0.71 -13.98 16 20 H -0.27 -12.52 7.11 99.48 0.71 -11.81 16 21 C 0.14 5.19 6.14 86.85 0.53 5.73 16 22 C -0.07 -2.28 0.83 -50.79 -0.04 -2.32 16 23 C -0.13 -2.72 8.35 71.98 0.60 -2.12 16 24 C -0.12 -3.68 8.61 71.98 0.62 -3.06 16 25 N -0.43 -11.71 3.17 -524.95 -1.67 -13.38 16 26 C 0.06 1.32 10.57 127.77 1.35 2.67 16 27 H 0.10 1.05 8.14 -2.39 -0.02 1.03 16 28 H 0.10 1.13 8.14 -2.38 -0.02 1.11 16 29 H 0.10 0.75 7.10 -2.39 -0.02 0.73 16 30 H 0.20 4.42 7.46 -2.91 -0.02 4.40 16 31 H 0.41 11.61 5.77 -92.71 -0.53 11.08 16 32 H 0.01 0.49 7.38 -2.39 -0.02 0.47 16 33 H 0.00 -0.17 7.41 -2.39 -0.02 -0.18 16 34 H 0.24 15.09 8.31 -92.71 -0.77 14.32 16 35 H 0.03 1.10 8.04 -2.39 -0.02 1.08 16 36 H 0.05 1.84 8.05 -2.39 -0.02 1.82 16 37 H 0.08 1.45 8.14 -2.39 -0.02 1.43 16 38 H 0.07 1.35 8.14 -2.38 -0.02 1.33 16 39 H 0.06 1.23 6.16 -2.39 -0.01 1.22 16 40 H 0.03 1.14 7.81 -2.39 -0.02 1.12 16 41 H 0.07 1.79 8.14 -2.39 -0.02 1.77 16 42 H 0.08 1.97 8.14 -2.39 -0.02 1.95 16 43 H 0.08 1.72 8.14 -2.39 -0.02 1.71 16 44 H 0.13 1.54 7.12 -2.39 -0.02 1.52 16 45 H 0.09 2.32 6.22 -2.39 -0.01 2.31 16 Total: -1.00 -80.09 358.82 3.19 -76.90 By element: Atomic # 1 Polarization: 19.75 SS G_CDS: 0.46 Total: 20.22 kcal Atomic # 6 Polarization: 20.07 SS G_CDS: 8.64 Total: 28.71 kcal Atomic # 7 Polarization: -141.65 SS G_CDS: -7.88 Total: -149.52 kcal Atomic # 8 Polarization: -25.17 SS G_CDS: -0.06 Total: -25.23 kcal Atomic # 14 Polarization: 46.91 SS G_CDS: 2.03 Total: 48.93 kcal Total: -80.09 3.19 -76.90 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000974957607.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.489 kcal (2) G-P(sol) polarization free energy of solvation -80.087 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.402 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.187 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.900 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.589 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds