Wall clock time and date at job start Tue Mar 31 2020 03:52:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.50702 * 109.46874 * 2 1 4 4 C 1.35358 * 126.38752 * 84.97497 * 3 2 1 5 5 C 1.41501 * 105.50596 * 180.02562 * 4 3 2 6 6 C 1.47710 * 126.52024 * 180.02562 * 5 4 3 7 7 O 1.21565 * 119.99997 * 0.02562 * 6 5 4 8 8 N 1.34775 * 119.99772 * 180.02562 * 6 5 4 9 9 C 1.47425 * 125.64911 * 0.04286 * 8 6 5 10 10 C 1.54912 * 104.83476 * 155.83741 * 9 8 6 11 11 C 1.55154 * 101.58113 * 37.00492 * 10 9 8 12 12 H 1.09000 * 110.72506 * 82.86442 * 11 10 9 13 13 N 1.46503 * 110.72190 * 206.14084 * 11 10 9 14 14 C 1.36939 * 119.99594 * 268.52191 * 13 11 10 15 15 H 1.07999 * 120.00147 * 0.02562 * 14 13 11 16 16 C 1.38813 * 119.99712 * 179.97438 * 14 13 11 17 17 N 1.31621 * 119.99596 * 179.97438 * 16 14 13 18 18 Si 1.86789 * 120.00341 * 0.02562 * 16 14 13 19 19 H 1.48504 * 109.47450 * 89.99425 * 18 16 14 20 20 H 1.48502 * 109.47465 * 209.99778 * 18 16 14 21 21 H 1.48509 * 109.46959 * 329.99901 * 18 16 14 22 22 C 1.47022 * 125.64810 * 179.97438 * 8 6 5 23 23 H 1.09002 * 109.88254 * 300.51377 * 22 8 6 24 24 C 1.53005 * 109.87895 * 61.52501 * 22 8 6 25 25 N 1.31809 * 106.95748 * 0.26249 * 5 4 3 26 26 N 1.28469 * 110.07786 * 359.55827 * 25 5 4 27 27 C 1.46493 * 124.88648 * 180.16519 * 26 25 5 28 28 H 1.08998 * 109.47173 * 60.00539 * 1 2 3 29 29 H 1.09006 * 109.47193 * 180.02562 * 1 2 3 30 30 H 1.08997 * 109.47368 * 300.00202 * 1 2 3 31 31 H 1.09001 * 109.46976 * 239.99503 * 2 1 3 32 32 H 1.09007 * 109.46845 * 119.99934 * 2 1 3 33 33 H 1.08009 * 127.24722 * 0.02562 * 4 3 2 34 34 H 1.09000 * 110.36364 * 274.67033 * 9 8 6 35 35 H 1.08996 * 110.37195 * 36.88630 * 9 8 6 36 36 H 1.08991 * 111.00746 * 155.08349 * 10 9 8 37 37 H 1.09003 * 111.00242 * 278.93313 * 10 9 8 38 38 H 0.96993 * 120.00371 * 88.52539 * 13 11 10 39 39 H 0.96999 * 119.99859 * 179.97438 * 17 16 14 40 40 H 1.08991 * 109.47360 * 58.28396 * 24 22 8 41 41 H 1.09006 * 109.46753 * 178.28482 * 24 22 8 42 42 H 1.09004 * 109.46911 * 298.28130 * 24 22 8 43 43 H 1.09007 * 109.46680 * 270.33030 * 27 26 25 44 44 H 1.08994 * 109.47474 * 30.32986 * 27 26 25 45 45 H 1.09005 * 109.47534 * 150.33812 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 6 2.2099 2.2098 1.0855 5 6 2.6916 3.4417 0.5830 6 6 3.0409 4.6381 1.3757 7 8 2.9235 4.6212 2.5856 8 7 3.4898 5.7485 0.7577 9 6 3.6784 5.9061 -0.6959 10 6 3.5880 7.4325 -0.9444 11 6 4.2937 7.9958 0.3173 12 1 5.3760 7.9916 0.1882 13 7 3.8119 9.3454 0.6216 14 6 4.4594 10.4361 0.1056 15 1 5.3250 10.3014 -0.5261 16 6 4.0026 11.7149 0.3935 17 7 4.6253 12.7632 -0.1021 18 14 2.5051 11.9480 1.4854 19 1 2.9369 12.0518 2.9024 20 1 1.7943 13.1912 1.0921 21 1 1.5933 10.7862 1.3297 22 6 3.8712 7.0037 1.4214 23 1 3.0213 7.4039 1.9742 24 6 5.0409 6.7533 2.3754 25 7 2.7644 3.3203 -0.7275 26 7 2.3884 2.1445 -1.0830 27 6 2.3457 1.6606 -2.4651 28 1 -0.3633 0.5137 -0.8900 29 1 -0.3634 -1.0277 0.0005 30 1 -0.3634 0.5138 0.8899 31 1 1.8933 -0.5139 -0.8900 32 1 1.8933 -0.5139 0.8901 33 1 2.0233 1.9530 2.1179 34 1 4.6572 5.5305 -0.9943 35 1 2.8908 5.3843 -1.2395 36 1 4.1248 7.7133 -1.8505 37 1 2.5494 7.7600 -0.9902 38 1 3.0343 9.4665 1.1887 39 1 4.3059 13.6568 0.0987 40 1 5.8825 6.3418 1.8183 41 1 5.3379 7.6932 2.8407 42 1 4.7355 6.0465 3.1470 43 1 1.3697 1.8817 -2.8974 44 1 3.1219 2.1564 -3.0478 45 1 2.5133 0.5836 -2.4784 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000987621666.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:52:57 Heat of formation + Delta-G solvation = 63.170947 kcal Electronic energy + Delta-G solvation = -25484.435611 eV Core-core repulsion = 21925.348170 eV Total energy + Delta-G solvation = -3559.087442 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 306.180 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -42.85994 -39.74311 -37.34960 -34.78666 -34.16086 -33.59297 -31.65392 -30.90837 -29.81344 -29.38011 -27.52348 -25.26571 -24.17212 -23.69576 -22.58164 -21.70682 -20.69349 -20.10901 -18.60854 -17.54672 -17.11356 -16.54894 -16.48666 -15.91489 -15.03658 -14.83491 -14.54511 -14.31310 -14.01231 -13.77544 -13.60280 -13.30953 -13.20442 -12.98909 -12.75332 -12.68646 -12.63249 -12.19287 -12.01269 -11.95726 -11.77733 -11.54057 -11.28900 -11.12733 -10.90335 -10.70611 -10.54548 -10.26219 -10.02071 -9.80105 -9.59222 -9.25039 -9.10407 -8.92454 -8.34619 -7.29916 -5.78810 -3.15427 1.53798 1.96685 2.23833 3.17560 3.39392 3.43228 3.47077 3.53713 4.10317 4.20139 4.46767 4.58700 4.61749 4.67636 4.83939 4.94815 5.03498 5.09660 5.10521 5.19420 5.30046 5.36577 5.44832 5.52036 5.57230 5.63295 5.69586 5.72772 5.79757 5.83443 5.92625 6.03366 6.09872 6.27072 6.34252 6.44140 6.56559 6.60447 6.61823 6.76377 6.88025 7.70421 7.81951 7.96078 8.38172 8.39913 9.16962 9.89650 10.08558 11.39061 Molecular weight = 306.18amu Principal moments of inertia in cm(-1) A = 0.025604 B = 0.003110 C = 0.003015 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1093.303742 B = 9001.439891 C = 9285.562799 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.052 4.052 3 C 0.009 3.991 4 C -0.177 4.177 5 C -0.005 4.005 6 C 0.613 3.387 7 O -0.538 6.538 8 N -0.596 5.596 9 C 0.103 3.897 10 C -0.156 4.156 11 C 0.182 3.818 12 H 0.077 0.923 13 N -0.739 5.739 14 C -0.245 4.245 15 H 0.092 0.908 16 C 0.008 3.992 17 N -0.932 5.932 18 Si 0.882 3.118 19 H -0.283 1.283 20 H -0.291 1.291 21 H -0.277 1.277 22 C 0.124 3.876 23 H 0.075 0.925 24 C -0.156 4.156 25 N -0.256 5.256 26 N -0.285 5.285 27 C 0.085 3.915 28 H 0.053 0.947 29 H 0.063 0.937 30 H 0.062 0.938 31 H 0.073 0.927 32 H 0.090 0.910 33 H 0.160 0.840 34 H 0.063 0.937 35 H 0.086 0.914 36 H 0.079 0.921 37 H 0.072 0.928 38 H 0.363 0.637 39 H 0.260 0.740 40 H 0.053 0.947 41 H 0.071 0.929 42 H 0.063 0.937 43 H 0.084 0.916 44 H 0.098 0.902 45 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.973 -28.604 -4.246 29.528 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.091 4.091 3 C -0.115 4.115 4 C -0.205 4.205 5 C -0.164 4.164 6 C 0.400 3.600 7 O -0.414 6.414 8 N -0.329 5.329 9 C -0.020 4.020 10 C -0.197 4.197 11 C 0.071 3.929 12 H 0.095 0.905 13 N -0.380 5.380 14 C -0.375 4.375 15 H 0.110 0.890 16 C -0.188 4.188 17 N -0.579 5.579 18 Si 0.712 3.288 19 H -0.209 1.209 20 H -0.217 1.217 21 H -0.203 1.203 22 C 0.020 3.980 23 H 0.093 0.907 24 C -0.214 4.214 25 N -0.091 5.091 26 N -0.073 5.073 27 C -0.055 4.055 28 H 0.072 0.928 29 H 0.082 0.918 30 H 0.082 0.918 31 H 0.092 0.908 32 H 0.108 0.892 33 H 0.177 0.823 34 H 0.081 0.919 35 H 0.104 0.896 36 H 0.098 0.902 37 H 0.090 0.910 38 H 0.196 0.804 39 H 0.070 0.930 40 H 0.072 0.928 41 H 0.090 0.910 42 H 0.082 0.918 43 H 0.102 0.898 44 H 0.116 0.884 45 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -5.595 -27.924 -4.772 28.876 hybrid contribution -1.320 -0.102 1.208 1.792 sum -6.914 -28.026 -3.564 29.085 Atomic orbital electron populations 1.21766 0.94024 1.02128 1.02701 1.20099 0.96437 0.88825 1.03729 1.21358 1.06213 0.96947 0.86958 1.21470 1.07049 0.92415 0.99596 1.21880 1.08143 0.96644 0.89777 1.16513 0.77264 0.80353 0.85899 1.90763 1.55067 1.82580 1.13031 1.48358 1.63183 1.12400 1.08966 1.22500 1.01654 0.97693 0.80156 1.23549 1.02500 0.92443 1.01243 1.21224 0.97593 0.84016 0.90116 0.90536 1.42707 1.34318 1.00822 1.60190 1.19041 1.09758 0.83692 1.24995 0.88996 1.24653 0.98755 0.95324 1.00110 1.69698 1.41881 0.97601 1.48715 0.86589 0.83816 0.77202 0.81181 1.20909 1.21701 1.20265 1.21987 0.97676 0.83391 0.94914 0.90740 1.22061 0.97263 1.02572 0.99468 1.73706 1.18485 1.01978 1.14961 1.45396 1.45893 1.08245 1.07738 1.22139 1.04853 1.00896 0.77626 0.92765 0.91780 0.91849 0.90819 0.89182 0.82251 0.91850 0.89617 0.90200 0.90964 0.80380 0.92994 0.92812 0.91035 0.91837 0.89785 0.88375 0.88842 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.77 9.89 37.16 0.37 -0.40 16 2 C -0.05 -0.29 6.21 -27.88 -0.17 -0.46 16 3 C 0.01 0.09 6.17 -82.21 -0.51 -0.42 16 4 C -0.18 -2.21 10.73 -39.37 -0.42 -2.64 16 5 C 0.00 -0.07 6.97 -82.77 -0.58 -0.64 16 6 C 0.61 10.75 7.65 -12.39 -0.09 10.66 16 7 O -0.54 -10.70 15.96 5.31 0.08 -10.61 16 8 N -0.60 -10.12 3.07 -164.17 -0.50 -10.62 16 9 C 0.10 1.55 6.16 -2.53 -0.02 1.54 16 10 C -0.16 -2.66 6.77 -24.58 -0.17 -2.83 16 11 C 0.18 3.52 3.14 -66.09 -0.21 3.31 16 12 H 0.08 1.50 7.81 -51.93 -0.41 1.09 16 13 N -0.74 -17.37 5.03 -51.65 -0.26 -17.63 16 14 C -0.25 -6.78 10.44 -15.06 -0.16 -6.94 16 15 H 0.09 2.70 8.06 -52.49 -0.42 2.28 16 16 C 0.01 0.22 5.50 -17.43 -0.10 0.13 16 17 N -0.93 -29.01 13.97 55.49 0.78 -28.24 16 18 Si 0.88 22.22 27.74 -169.99 -4.71 17.50 16 19 H -0.28 -7.10 7.11 56.52 0.40 -6.70 16 20 H -0.29 -7.41 7.11 56.52 0.40 -7.01 16 21 H -0.28 -6.64 6.52 56.52 0.37 -6.27 16 22 C 0.12 2.25 3.20 -66.95 -0.21 2.04 16 23 H 0.07 1.46 7.72 -51.93 -0.40 1.06 16 24 C -0.16 -2.65 9.11 37.16 0.34 -2.31 16 25 N -0.26 -3.37 9.09 33.42 0.30 -3.07 16 26 N -0.28 -2.82 3.70 -63.86 -0.24 -3.05 16 27 C 0.09 0.43 11.11 59.84 0.66 1.09 16 28 H 0.05 0.29 8.14 -51.93 -0.42 -0.13 16 29 H 0.06 0.23 8.14 -51.93 -0.42 -0.19 16 30 H 0.06 0.40 8.14 -51.93 -0.42 -0.03 16 31 H 0.07 0.27 6.86 -51.93 -0.36 -0.09 16 32 H 0.09 0.44 8.14 -51.92 -0.42 0.01 16 33 H 0.16 1.84 8.06 -52.48 -0.42 1.42 16 34 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 35 H 0.09 1.24 6.19 -51.93 -0.32 0.92 16 36 H 0.08 1.31 8.14 -51.93 -0.42 0.89 16 37 H 0.07 1.31 8.14 -51.93 -0.42 0.89 16 38 H 0.36 8.56 5.42 -40.82 -0.22 8.34 16 39 H 0.26 7.73 8.31 -40.82 -0.34 7.39 16 40 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 41 H 0.07 1.22 8.14 -51.93 -0.42 0.80 16 42 H 0.06 1.11 6.88 -51.93 -0.36 0.75 16 43 H 0.08 0.32 8.14 -51.93 -0.42 -0.10 16 44 H 0.10 0.45 8.14 -51.93 -0.42 0.02 16 45 H 0.09 0.22 6.88 -51.93 -0.36 -0.14 16 LS Contribution 364.06 15.07 5.49 5.49 Total: -1.00 -34.59 364.06 -7.41 -42.00 By element: Atomic # 1 Polarization: 13.19 SS G_CDS: -7.08 Total: 6.11 kcal Atomic # 6 Polarization: 3.38 SS G_CDS: -1.26 Total: 2.12 kcal Atomic # 7 Polarization: -62.68 SS G_CDS: 0.08 Total: -62.60 kcal Atomic # 8 Polarization: -10.70 SS G_CDS: 0.08 Total: -10.61 kcal Atomic # 14 Polarization: 22.22 SS G_CDS: -4.71 Total: 17.50 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -34.59 -7.41 -42.00 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000987621666.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.167 kcal (2) G-P(sol) polarization free energy of solvation -34.588 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 70.579 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.408 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.996 kcal (6) G-S(sol) free energy of system = (1) + (5) 63.171 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds