Wall clock time and date at job start Tue Mar 31 2020 03:52:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.50701 * 109.47473 * 2 1 4 4 C 1.35367 * 126.38285 * 85.01902 * 3 2 1 5 5 C 1.41505 * 105.49663 * 179.97438 * 4 3 2 6 6 C 1.47715 * 126.51524 * 179.97438 * 5 4 3 7 7 O 1.21572 * 119.99635 * 0.02562 * 6 5 4 8 8 N 1.34778 * 120.00204 * 180.02562 * 6 5 4 9 9 C 1.47425 * 125.64657 * 0.02562 * 8 6 5 10 10 C 1.54900 * 104.83107 * 155.82598 * 9 8 6 11 11 C 1.55156 * 101.58189 * 37.01239 * 10 9 8 12 12 H 1.09001 * 110.72640 * 205.95697 * 11 10 9 13 13 N 1.46507 * 110.72248 * 82.85772 * 11 10 9 14 14 C 1.36938 * 119.99863 * 89.16993 * 13 11 10 15 15 H 1.08000 * 119.99913 * 359.97438 * 14 13 11 16 16 C 1.38803 * 119.99901 * 179.72593 * 14 13 11 17 17 N 1.31623 * 120.00314 * 0.27765 * 16 14 13 18 18 Si 1.86805 * 120.00020 * 180.27403 * 16 14 13 19 19 H 1.48498 * 109.46932 * 60.00202 * 18 16 14 20 20 H 1.48501 * 109.47177 * 180.02562 * 18 16 14 21 21 H 1.48504 * 109.47200 * 300.00067 * 18 16 14 22 22 C 1.47012 * 125.64961 * 179.97438 * 8 6 5 23 23 H 1.08999 * 109.88892 * 300.52229 * 22 8 6 24 24 C 1.53003 * 109.88212 * 61.68627 * 22 8 6 25 25 N 1.31810 * 106.96892 * 0.24795 * 5 4 3 26 26 N 1.28468 * 110.06759 * 359.58776 * 25 5 4 27 27 C 1.46503 * 124.88197 * 180.20729 * 26 25 5 28 28 H 1.08997 * 109.47243 * 179.97438 * 1 2 3 29 29 H 1.08997 * 109.47371 * 300.00245 * 1 2 3 30 30 H 1.09003 * 109.47308 * 60.00429 * 1 2 3 31 31 H 1.08997 * 109.47371 * 239.99755 * 2 1 3 32 32 H 1.08999 * 109.47263 * 120.00085 * 2 1 3 33 33 H 1.07994 * 127.25219 * 0.02562 * 4 3 2 34 34 H 1.09009 * 110.36325 * 36.99018 * 9 8 6 35 35 H 1.09000 * 110.45870 * 274.71633 * 9 8 6 36 36 H 1.08993 * 111.01017 * 278.93810 * 10 9 8 37 37 H 1.09006 * 111.00608 * 155.08241 * 10 9 8 38 38 H 0.96994 * 120.00004 * 269.17117 * 13 11 10 39 39 H 0.97001 * 120.00496 * 179.97438 * 17 16 14 40 40 H 1.09002 * 109.47215 * 170.78105 * 24 22 8 41 41 H 1.08994 * 109.47244 * 290.78465 * 24 22 8 42 42 H 1.09001 * 109.47190 * 50.78651 * 24 22 8 43 43 H 1.08993 * 109.47178 * 270.24761 * 27 26 25 44 44 H 1.09005 * 109.47155 * 30.24582 * 27 26 25 45 45 H 1.09003 * 109.46910 * 150.24748 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.2109 2.2094 1.0857 5 6 2.6935 3.4410 0.5832 6 6 3.0430 4.6374 1.3759 7 8 2.9248 4.6206 2.5858 8 7 3.4928 5.7475 0.7581 9 6 3.6827 5.9047 -0.6954 10 6 3.5927 7.4309 -0.9443 11 6 4.2976 7.9944 0.3178 12 1 3.9415 8.9999 0.5420 13 7 5.7525 7.9882 0.1454 14 6 6.3806 9.0706 -0.4106 15 1 5.8035 9.9286 -0.7223 16 6 7.7596 9.0671 -0.5688 17 7 8.4629 8.0212 -0.1894 18 14 8.6173 10.5467 -1.3202 19 1 8.3549 11.7472 -0.4863 20 1 10.0795 10.2942 -1.3790 21 1 8.0993 10.7748 -2.6931 22 6 3.8744 7.0025 1.4218 23 1 3.0245 7.4032 1.9742 24 6 5.0460 6.7525 2.3736 25 7 2.7663 3.3197 -0.7273 26 7 2.3888 2.1444 -1.0829 27 6 2.3464 1.6604 -2.4650 28 1 -0.3633 -1.0276 -0.0005 29 1 -0.3634 0.5138 0.8899 30 1 -0.3634 0.5138 -0.8900 31 1 1.8933 -0.5138 -0.8899 32 1 1.8933 -0.5138 0.8900 33 1 2.0250 1.9524 2.1180 34 1 2.8941 5.3845 -1.2394 35 1 4.6609 5.5284 -0.9948 36 1 2.5543 7.7587 -0.9909 37 1 4.1304 7.7115 -1.8501 38 1 6.2707 7.2175 0.4250 39 1 9.4266 8.0186 -0.3003 40 1 5.4292 7.7062 2.7365 41 1 4.7066 6.1523 3.2177 42 1 5.8369 6.2209 1.8444 43 1 1.3708 1.8815 -2.8976 44 1 3.1229 2.1562 -3.0476 45 1 2.5141 0.5834 -2.4782 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000987621667.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:52:59 Heat of formation + Delta-G solvation = 64.076681 kcal Electronic energy + Delta-G solvation = -25757.148450 eV Core-core repulsion = 22198.100284 eV Total energy + Delta-G solvation = -3559.048166 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 306.180 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -42.72025 -39.60143 -37.23959 -34.67280 -33.86152 -33.44532 -31.48873 -30.66952 -29.51531 -28.85790 -27.32592 -25.07551 -24.07292 -23.62600 -23.27552 -21.57779 -20.55099 -19.46299 -18.25011 -17.35105 -16.96790 -16.40235 -16.27667 -15.80473 -14.89540 -14.67615 -14.54234 -14.15067 -13.78707 -13.74180 -13.55755 -13.11506 -13.10199 -12.86496 -12.75163 -12.49823 -12.43843 -12.17188 -11.91442 -11.61649 -11.49089 -11.20873 -10.94926 -10.91011 -10.77818 -10.53073 -10.42039 -10.18359 -9.97738 -9.62539 -9.54532 -9.11081 -8.97364 -8.89199 -8.13877 -6.96420 -5.76443 -3.05702 1.68895 2.10213 2.37413 3.38503 3.44237 3.48917 3.49768 3.70658 4.23882 4.31376 4.56748 4.58909 4.75670 4.80428 4.92923 5.06093 5.17172 5.21802 5.27314 5.33599 5.46153 5.55151 5.59109 5.64121 5.71955 5.79780 5.80334 5.90712 5.91506 6.00303 6.18082 6.26253 6.46682 6.49035 6.53900 6.65939 6.69722 6.73137 6.89426 6.99436 7.09759 7.70355 7.87290 8.00044 8.41775 8.55928 9.53259 10.09839 10.45320 11.45794 Molecular weight = 306.18amu Principal moments of inertia in cm(-1) A = 0.023335 B = 0.003307 C = 0.003111 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1199.649748 B = 8465.313440 C = 8997.661778 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.052 4.052 3 C 0.007 3.993 4 C -0.178 4.178 5 C -0.004 4.004 6 C 0.612 3.388 7 O -0.542 6.542 8 N -0.594 5.594 9 C 0.111 3.889 10 C -0.161 4.161 11 C 0.172 3.828 12 H 0.069 0.931 13 N -0.714 5.714 14 C -0.242 4.242 15 H 0.071 0.929 16 C -0.011 4.011 17 N -0.931 5.931 18 Si 0.907 3.093 19 H -0.286 1.286 20 H -0.292 1.292 21 H -0.286 1.286 22 C 0.127 3.873 23 H 0.072 0.928 24 C -0.147 4.147 25 N -0.254 5.254 26 N -0.285 5.285 27 C 0.086 3.914 28 H 0.062 0.938 29 H 0.062 0.938 30 H 0.053 0.947 31 H 0.073 0.927 32 H 0.089 0.911 33 H 0.159 0.841 34 H 0.080 0.920 35 H 0.068 0.932 36 H 0.058 0.942 37 H 0.086 0.914 38 H 0.388 0.612 39 H 0.256 0.744 40 H 0.070 0.930 41 H 0.053 0.947 42 H 0.061 0.939 43 H 0.083 0.917 44 H 0.098 0.902 45 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.180 -16.370 -3.559 23.290 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.091 4.091 3 C -0.116 4.116 4 C -0.206 4.206 5 C -0.164 4.164 6 C 0.399 3.601 7 O -0.419 6.419 8 N -0.326 5.326 9 C -0.012 4.012 10 C -0.203 4.203 11 C 0.060 3.940 12 H 0.086 0.914 13 N -0.356 5.356 14 C -0.373 4.373 15 H 0.089 0.911 16 C -0.207 4.207 17 N -0.579 5.579 18 Si 0.738 3.262 19 H -0.213 1.213 20 H -0.218 1.218 21 H -0.213 1.213 22 C 0.024 3.976 23 H 0.090 0.910 24 C -0.206 4.206 25 N -0.089 5.089 26 N -0.073 5.073 27 C -0.055 4.055 28 H 0.081 0.919 29 H 0.081 0.919 30 H 0.072 0.928 31 H 0.091 0.909 32 H 0.108 0.892 33 H 0.177 0.823 34 H 0.098 0.902 35 H 0.086 0.914 36 H 0.077 0.923 37 H 0.104 0.896 38 H 0.225 0.775 39 H 0.066 0.934 40 H 0.089 0.911 41 H 0.072 0.928 42 H 0.080 0.920 43 H 0.101 0.899 44 H 0.117 0.883 45 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -15.871 -15.724 -4.044 22.704 hybrid contribution 0.580 0.059 0.078 0.588 sum -15.291 -15.664 -3.966 22.247 Atomic orbital electron populations 1.21758 0.94112 1.02034 1.02625 1.20087 0.96348 0.88920 1.03716 1.21342 1.06391 0.96893 0.87024 1.21457 1.07135 0.92486 0.99504 1.21918 1.07912 0.96751 0.89776 1.16494 0.77406 0.80378 0.85861 1.90750 1.55555 1.82573 1.12996 1.48457 1.62659 1.12449 1.09074 1.22384 1.01741 0.97257 0.79783 1.23536 1.00014 0.94389 1.02314 1.21216 0.86639 0.95535 0.90618 0.91360 1.42534 0.99670 1.19916 1.73481 1.19195 0.90004 0.95327 1.32752 0.91107 1.24740 0.96359 0.97697 1.01921 1.69659 1.06088 1.29262 1.52883 0.86273 0.78607 0.82287 0.79003 1.21259 1.21794 1.21324 1.22009 0.97181 0.83580 0.94849 0.91011 1.21908 0.97481 1.02514 0.98650 1.73748 1.18147 1.01977 1.15043 1.45395 1.45891 1.08348 1.07694 1.22128 1.04750 1.00884 0.77728 0.91855 0.91879 0.92816 0.90851 0.89216 0.82310 0.90177 0.91401 0.92285 0.89569 0.77532 0.93435 0.91097 0.92779 0.91982 0.89891 0.88341 0.88899 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.86 9.89 37.16 0.37 -0.50 16 2 C -0.05 -0.34 6.21 -27.89 -0.17 -0.52 16 3 C 0.01 0.08 6.17 -82.21 -0.51 -0.43 16 4 C -0.18 -2.46 10.73 -39.36 -0.42 -2.88 16 5 C 0.00 -0.06 6.97 -82.76 -0.58 -0.64 16 6 C 0.61 11.68 7.65 -12.39 -0.09 11.58 16 7 O -0.54 -11.44 16.11 5.30 0.09 -11.36 16 8 N -0.59 -11.07 3.06 -164.17 -0.50 -11.57 16 9 C 0.11 1.95 6.14 -2.53 -0.02 1.94 16 10 C -0.16 -2.85 6.77 -24.59 -0.17 -3.02 16 11 C 0.17 3.44 3.47 -66.09 -0.23 3.21 16 12 H 0.07 1.34 8.10 -51.93 -0.42 0.92 16 13 N -0.71 -17.52 4.59 -51.65 -0.24 -17.76 16 14 C -0.24 -6.53 9.97 -15.06 -0.15 -6.68 16 15 H 0.07 1.84 7.83 -52.49 -0.41 1.43 16 16 C -0.01 -0.31 5.50 -17.43 -0.10 -0.40 16 17 N -0.93 -27.91 13.06 55.49 0.72 -27.18 16 18 Si 0.91 22.16 29.55 -169.99 -5.02 17.14 16 19 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 20 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 21 H -0.29 -6.88 7.11 56.52 0.40 -6.47 16 22 C 0.13 2.42 3.43 -66.96 -0.23 2.19 16 23 H 0.07 1.30 8.14 -51.93 -0.42 0.87 16 24 C -0.15 -2.98 8.13 37.16 0.30 -2.67 16 25 N -0.25 -3.81 9.09 33.42 0.30 -3.50 16 26 N -0.29 -3.26 3.70 -63.85 -0.24 -3.50 16 27 C 0.09 0.56 11.11 59.85 0.66 1.22 16 28 H 0.06 0.27 8.14 -51.93 -0.42 -0.15 16 29 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 30 H 0.05 0.32 8.14 -51.93 -0.42 -0.10 16 31 H 0.07 0.35 6.86 -51.93 -0.36 0.00 16 32 H 0.09 0.54 8.14 -51.93 -0.42 0.11 16 33 H 0.16 2.03 8.06 -52.49 -0.42 1.60 16 34 H 0.08 1.30 6.19 -51.92 -0.32 0.98 16 35 H 0.07 1.33 8.14 -51.93 -0.42 0.91 16 36 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 37 H 0.09 1.63 8.14 -51.93 -0.42 1.21 16 38 H 0.39 10.31 5.75 -40.82 -0.23 10.07 16 39 H 0.26 7.47 8.31 -40.82 -0.34 7.14 16 40 H 0.07 1.45 8.12 -51.93 -0.42 1.03 16 41 H 0.05 1.08 7.14 -51.93 -0.37 0.70 16 42 H 0.06 1.38 6.64 -51.93 -0.34 1.03 16 43 H 0.08 0.41 8.14 -51.93 -0.42 -0.01 16 44 H 0.10 0.63 8.14 -51.93 -0.42 0.21 16 45 H 0.09 0.36 6.88 -51.93 -0.36 0.00 16 LS Contribution 363.91 15.07 5.48 5.48 Total: -1.00 -33.44 363.91 -7.75 -41.19 By element: Atomic # 1 Polarization: 15.67 SS G_CDS: -7.02 Total: 8.64 kcal Atomic # 6 Polarization: 3.74 SS G_CDS: -1.33 Total: 2.41 kcal Atomic # 7 Polarization: -63.57 SS G_CDS: 0.05 Total: -63.52 kcal Atomic # 8 Polarization: -11.44 SS G_CDS: 0.09 Total: -11.36 kcal Atomic # 14 Polarization: 22.16 SS G_CDS: -5.02 Total: 17.14 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -33.44 -7.75 -41.19 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000987621667.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.269 kcal (2) G-P(sol) polarization free energy of solvation -33.439 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 71.830 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.753 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.192 kcal (6) G-S(sol) free energy of system = (1) + (5) 64.077 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds