Wall clock time and date at job start Tue Mar 31 2020 03:53:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.50699 * 109.46878 * 2 1 4 4 C 1.35368 * 126.38677 * 84.97603 * 3 2 1 5 5 C 1.41500 * 105.50345 * 180.02562 * 4 3 2 6 6 C 1.47710 * 126.51363 * 180.02562 * 5 4 3 7 7 O 1.21560 * 120.00675 * 0.02562 * 6 5 4 8 8 N 1.34787 * 119.99451 * 179.97438 * 6 5 4 9 9 C 1.47423 * 125.64737 * 359.97438 * 8 6 5 10 10 C 1.54918 * 104.82733 * 204.15865 * 9 8 6 11 11 C 1.55159 * 101.58370 * 322.99265 * 10 9 8 12 12 H 1.08994 * 110.71739 * 276.96297 * 11 10 9 13 13 N 1.46496 * 110.71853 * 153.86180 * 11 10 9 14 14 C 1.36945 * 119.99718 * 86.45499 * 13 11 10 15 15 H 1.07997 * 119.99756 * 359.97438 * 14 13 11 16 16 C 1.38805 * 119.99878 * 179.97438 * 14 13 11 17 17 N 1.31624 * 120.00257 * 0.02562 * 16 14 13 18 18 Si 1.86803 * 119.99929 * 179.97438 * 16 14 13 19 19 H 1.48498 * 109.47174 * 270.00277 * 18 16 14 20 20 H 1.48501 * 109.47062 * 30.00228 * 18 16 14 21 21 H 1.48499 * 109.46981 * 150.00382 * 18 16 14 22 22 C 1.47018 * 125.64413 * 180.02562 * 8 6 5 23 23 H 1.09005 * 109.88310 * 59.49289 * 22 8 6 24 24 C 1.52994 * 109.88641 * 298.32780 * 22 8 6 25 25 N 1.31804 * 106.96443 * 0.26303 * 5 4 3 26 26 N 1.28466 * 110.07474 * 359.55812 * 25 5 4 27 27 C 1.46504 * 124.88872 * 180.20522 * 26 25 5 28 28 H 1.09006 * 109.47112 * 59.99780 * 1 2 3 29 29 H 1.09004 * 109.47254 * 180.02562 * 1 2 3 30 30 H 1.09001 * 109.47181 * 300.00133 * 1 2 3 31 31 H 1.09003 * 109.47050 * 240.00398 * 2 1 3 32 32 H 1.08996 * 109.47192 * 120.00075 * 2 1 3 33 33 H 1.08006 * 127.24248 * 0.02562 * 4 3 2 34 34 H 1.08998 * 110.36461 * 85.32600 * 9 8 6 35 35 H 1.08996 * 110.36670 * 322.99798 * 9 8 6 36 36 H 1.08998 * 110.99995 * 204.91741 * 10 9 8 37 37 H 1.08999 * 111.03527 * 81.07956 * 10 9 8 38 38 H 0.96996 * 120.00499 * 266.45229 * 13 11 10 39 39 H 0.97001 * 119.99885 * 179.97438 * 17 16 14 40 40 H 1.09005 * 109.46936 * 302.19248 * 24 22 8 41 41 H 1.08996 * 109.47276 * 62.19074 * 24 22 8 42 42 H 1.08996 * 109.47618 * 182.19271 * 24 22 8 43 43 H 1.09002 * 109.46497 * 270.29076 * 27 26 25 44 44 H 1.08996 * 109.46697 * 30.28449 * 27 26 25 45 45 H 1.08992 * 109.47244 * 150.28863 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.2100 2.2098 1.0856 5 6 2.6917 3.4417 0.5831 6 6 3.0410 4.6380 1.3759 7 8 2.9236 4.6211 2.5857 8 7 3.4909 5.7482 0.7579 9 6 3.6819 5.9049 -0.6954 10 6 4.7433 7.0244 -0.8374 11 6 4.3491 7.9763 0.3228 12 1 3.5421 8.6424 0.0178 13 7 5.5094 8.7457 0.7789 14 6 5.8382 9.9213 0.1582 15 1 5.2425 10.2809 -0.6676 16 6 6.9373 10.6506 0.5907 17 7 7.6637 10.2120 1.5969 18 14 7.3863 12.2538 -0.2564 19 1 8.3226 11.9772 -1.3753 20 1 6.1563 12.8946 -0.7871 21 1 8.0369 13.1641 0.7200 22 6 3.8734 7.0029 1.4218 23 1 4.6827 6.8170 2.1281 24 6 2.6664 7.5938 2.1530 25 7 2.7645 3.3204 -0.7274 26 7 2.3885 2.1446 -1.0830 27 6 2.3465 1.6604 -2.4650 28 1 -0.3634 0.5139 -0.8900 29 1 -0.3634 -1.0277 0.0005 30 1 -0.3633 0.5139 0.8900 31 1 1.8934 -0.5138 -0.8900 32 1 1.8934 -0.5138 0.8899 33 1 2.0234 1.9529 2.1179 34 1 2.7480 6.2051 -1.1706 35 1 4.0493 4.9762 -1.1321 36 1 4.6556 7.5259 -1.8012 37 1 5.7494 6.6301 -0.6945 38 1 6.0447 8.4225 1.5204 39 1 8.4319 10.7214 1.8988 40 1 1.8560 7.7581 1.4427 41 1 2.3360 6.9014 2.9273 42 1 2.9470 8.5427 2.6100 43 1 1.3707 1.8810 -2.8977 44 1 3.1228 2.1567 -3.0475 45 1 2.5148 0.5837 -2.4781 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000987621668.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:53:01 Heat of formation + Delta-G solvation = 59.292150 kcal Electronic energy + Delta-G solvation = -25407.112060 eV Core-core repulsion = 21847.856421 eV Total energy + Delta-G solvation = -3559.255639 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 306.180 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -42.80624 -39.63549 -37.22712 -34.73849 -34.01940 -33.54194 -31.53987 -30.78988 -29.60035 -29.06985 -27.43997 -25.10463 -24.12885 -23.62919 -22.89914 -21.64835 -20.64095 -19.91122 -18.51606 -17.15418 -17.04595 -16.59543 -16.31940 -15.72735 -14.99204 -14.75305 -14.59381 -14.29159 -13.84590 -13.66302 -13.53370 -13.25056 -13.13309 -12.96550 -12.79197 -12.70927 -12.56375 -12.07440 -11.95102 -11.77142 -11.61643 -11.44916 -11.12767 -10.96244 -10.84638 -10.60925 -10.47976 -10.18598 -9.96097 -9.76521 -9.62360 -9.19530 -9.05293 -8.88688 -8.24766 -6.97499 -5.77127 -3.07141 1.59688 2.02439 2.28658 3.26702 3.43810 3.49090 3.50843 3.61398 4.15173 4.24360 4.50490 4.58823 4.67259 4.71659 4.87125 4.98019 5.09724 5.15247 5.22040 5.28402 5.41073 5.48512 5.50681 5.57174 5.67089 5.71939 5.75493 5.81993 5.85087 5.93819 6.08610 6.18691 6.23294 6.34314 6.44262 6.55818 6.62672 6.68565 6.71490 6.87703 7.02310 7.69959 7.77758 7.90229 8.40197 8.47092 9.51742 10.07127 10.42149 11.45212 Molecular weight = 306.18amu Principal moments of inertia in cm(-1) A = 0.029961 B = 0.002914 C = 0.002757 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 934.332660 B = 9607.148265 C =10152.761302 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.052 4.052 3 C 0.008 3.992 4 C -0.177 4.177 5 C -0.003 4.003 6 C 0.612 3.388 7 O -0.538 6.538 8 N -0.595 5.595 9 C 0.104 3.896 10 C -0.157 4.157 11 C 0.177 3.823 12 H 0.064 0.936 13 N -0.715 5.715 14 C -0.240 4.240 15 H 0.072 0.928 16 C -0.012 4.012 17 N -0.931 5.931 18 Si 0.908 3.092 19 H -0.290 1.290 20 H -0.282 1.282 21 H -0.292 1.292 22 C 0.128 3.872 23 H 0.079 0.921 24 C -0.154 4.154 25 N -0.256 5.256 26 N -0.285 5.285 27 C 0.086 3.914 28 H 0.053 0.947 29 H 0.063 0.937 30 H 0.062 0.938 31 H 0.073 0.927 32 H 0.090 0.910 33 H 0.160 0.840 34 H 0.061 0.939 35 H 0.084 0.916 36 H 0.074 0.926 37 H 0.073 0.927 38 H 0.386 0.614 39 H 0.256 0.744 40 H 0.050 0.950 41 H 0.062 0.938 42 H 0.070 0.930 43 H 0.083 0.917 44 H 0.097 0.903 45 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.315 -22.013 -8.006 27.451 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.091 4.091 3 C -0.115 4.115 4 C -0.205 4.205 5 C -0.163 4.163 6 C 0.399 3.601 7 O -0.414 6.414 8 N -0.328 5.328 9 C -0.019 4.019 10 C -0.198 4.198 11 C 0.065 3.935 12 H 0.082 0.918 13 N -0.356 5.356 14 C -0.371 4.371 15 H 0.090 0.910 16 C -0.208 4.208 17 N -0.578 5.578 18 Si 0.739 3.261 19 H -0.217 1.217 20 H -0.207 1.207 21 H -0.218 1.218 22 C 0.025 3.975 23 H 0.097 0.903 24 C -0.212 4.212 25 N -0.091 5.091 26 N -0.074 5.074 27 C -0.055 4.055 28 H 0.072 0.928 29 H 0.082 0.918 30 H 0.081 0.919 31 H 0.092 0.908 32 H 0.108 0.892 33 H 0.178 0.822 34 H 0.079 0.921 35 H 0.102 0.898 36 H 0.093 0.907 37 H 0.092 0.908 38 H 0.220 0.780 39 H 0.066 0.934 40 H 0.069 0.931 41 H 0.081 0.919 42 H 0.089 0.911 43 H 0.102 0.898 44 H 0.116 0.884 45 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -14.082 -21.340 -8.498 26.943 hybrid contribution 0.339 0.326 0.253 0.534 sum -13.744 -21.014 -8.245 26.428 Atomic orbital electron populations 1.21765 0.94057 1.02088 1.02659 1.20096 0.96401 0.88863 1.03730 1.21353 1.06297 0.96916 0.86981 1.21474 1.07036 0.92423 0.99578 1.21908 1.07954 0.96730 0.89756 1.16509 0.77435 0.80310 0.85875 1.90763 1.55005 1.82663 1.12994 1.48368 1.63200 1.12287 1.08950 1.22479 0.98949 1.00241 0.80263 1.23582 0.98304 0.96469 1.01431 1.21248 0.91267 0.90594 0.90395 0.91764 1.42355 1.29460 1.23950 1.39833 1.19202 1.08801 0.97463 1.11675 0.91023 1.24762 0.98280 0.99197 0.98551 1.69671 1.19815 1.39829 1.28527 0.86181 0.78126 0.83365 0.78439 1.21731 1.20721 1.21783 1.21916 0.97220 0.82728 0.95669 0.90311 1.22048 0.97296 1.01421 1.00480 1.73712 1.18313 1.02088 1.15031 1.45394 1.45906 1.08352 1.07701 1.22127 1.04774 1.00885 0.77681 0.92798 0.91812 0.91853 0.90844 0.89181 0.82247 0.92095 0.89783 0.90741 0.90795 0.77991 0.93422 0.93110 0.91922 0.91075 0.89835 0.88412 0.88880 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.78 9.89 37.16 0.37 -0.42 16 2 C -0.05 -0.31 6.21 -27.88 -0.17 -0.48 16 3 C 0.01 0.08 6.17 -82.21 -0.51 -0.42 16 4 C -0.18 -2.30 10.73 -39.36 -0.42 -2.72 16 5 C 0.00 -0.05 6.97 -82.77 -0.58 -0.63 16 6 C 0.61 11.19 7.65 -12.39 -0.09 11.09 16 7 O -0.54 -11.11 15.98 5.31 0.08 -11.03 16 8 N -0.60 -10.59 3.06 -164.17 -0.50 -11.09 16 9 C 0.10 1.64 6.15 -2.53 -0.02 1.63 16 10 C -0.16 -2.80 6.77 -24.58 -0.17 -2.97 16 11 C 0.18 3.57 3.11 -66.10 -0.21 3.37 16 12 H 0.06 1.30 7.84 -51.93 -0.41 0.89 16 13 N -0.72 -17.91 5.25 -51.66 -0.27 -18.18 16 14 C -0.24 -6.58 9.98 -15.06 -0.15 -6.73 16 15 H 0.07 1.89 7.83 -52.49 -0.41 1.48 16 16 C -0.01 -0.33 5.50 -17.43 -0.10 -0.43 16 17 N -0.93 -28.13 13.06 55.49 0.72 -27.40 16 18 Si 0.91 22.27 29.55 -169.99 -5.02 17.25 16 19 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 20 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 21 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 22 C 0.13 2.45 3.21 -66.96 -0.21 2.24 16 23 H 0.08 1.67 7.69 -51.93 -0.40 1.27 16 24 C -0.15 -2.76 9.10 37.15 0.34 -2.42 16 25 N -0.26 -3.51 9.10 33.42 0.30 -3.20 16 26 N -0.29 -2.95 3.70 -63.85 -0.24 -3.18 16 27 C 0.09 0.46 11.11 59.85 0.66 1.12 16 28 H 0.05 0.29 8.14 -51.93 -0.42 -0.13 16 29 H 0.06 0.24 8.14 -51.93 -0.42 -0.18 16 30 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 31 H 0.07 0.29 6.86 -51.93 -0.36 -0.06 16 32 H 0.09 0.47 8.14 -51.93 -0.42 0.05 16 33 H 0.16 1.92 8.06 -52.48 -0.42 1.50 16 34 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 35 H 0.08 1.28 6.21 -51.93 -0.32 0.95 16 36 H 0.07 1.26 8.14 -51.93 -0.42 0.83 16 37 H 0.07 1.44 8.14 -51.93 -0.42 1.02 16 38 H 0.39 10.40 7.51 -40.82 -0.31 10.09 16 39 H 0.26 7.50 8.31 -40.82 -0.34 7.16 16 40 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 41 H 0.06 1.15 6.90 -51.93 -0.36 0.79 16 42 H 0.07 1.29 8.14 -51.93 -0.42 0.86 16 43 H 0.08 0.33 8.14 -51.93 -0.42 -0.09 16 44 H 0.10 0.49 8.14 -51.93 -0.42 0.07 16 45 H 0.09 0.26 6.88 -51.93 -0.36 -0.10 16 LS Contribution 367.19 15.07 5.53 5.53 Total: -1.00 -33.86 367.19 -7.76 -41.62 By element: Atomic # 1 Polarization: 14.57 SS G_CDS: -7.13 Total: 7.44 kcal Atomic # 6 Polarization: 3.49 SS G_CDS: -1.25 Total: 2.24 kcal Atomic # 7 Polarization: -63.08 SS G_CDS: 0.02 Total: -63.06 kcal Atomic # 8 Polarization: -11.11 SS G_CDS: 0.08 Total: -11.03 kcal Atomic # 14 Polarization: 22.27 SS G_CDS: -5.02 Total: 17.25 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -33.86 -7.76 -41.62 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000987621668.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.912 kcal (2) G-P(sol) polarization free energy of solvation -33.855 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 67.057 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.765 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.620 kcal (6) G-S(sol) free energy of system = (1) + (5) 59.292 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds