Wall clock time and date at job start Tue Mar 31 2020 03:53:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.50703 * 109.47164 * 2 1 4 4 C 1.35358 * 126.38328 * 85.02194 * 3 2 1 5 5 C 1.41506 * 105.50173 * 180.02562 * 4 3 2 6 6 C 1.47711 * 126.51875 * 180.02562 * 5 4 3 7 7 O 1.21573 * 120.00075 * 0.02562 * 6 5 4 8 8 N 1.34777 * 119.99927 * 179.72952 * 6 5 4 9 9 C 1.47422 * 125.64727 * 359.96340 * 8 6 5 10 10 C 1.55132 * 104.72087 * 155.82223 * 9 8 6 11 11 C 1.55152 * 101.48808 * 37.29579 * 10 9 8 12 12 H 1.09002 * 110.72035 * 82.69552 * 11 10 9 13 13 N 1.46494 * 110.72447 * 205.97073 * 11 10 9 14 14 C 1.36939 * 120.00070 * 268.52301 * 13 11 10 15 15 H 1.08004 * 119.99940 * 359.97438 * 14 13 11 16 16 C 1.38810 * 120.00071 * 179.97438 * 14 13 11 17 17 N 1.31623 * 119.99832 * 0.02562 * 16 14 13 18 18 Si 1.86794 * 120.00081 * 179.97438 * 16 14 13 19 19 H 1.48506 * 109.47096 * 60.00043 * 18 16 14 20 20 H 1.48501 * 109.47520 * 180.02562 * 18 16 14 21 21 H 1.48499 * 109.47413 * 300.00387 * 18 16 14 22 22 C 1.47016 * 125.64839 * 180.28086 * 8 6 5 23 23 H 1.08999 * 109.88623 * 61.59740 * 22 8 6 24 24 C 1.53010 * 109.88244 * 300.43326 * 22 8 6 25 25 N 1.31804 * 106.95999 * 0.26727 * 5 4 3 26 26 N 1.28463 * 110.07805 * 359.55441 * 25 5 4 27 27 C 1.46502 * 124.88671 * 180.18246 * 26 25 5 28 28 H 1.08994 * 109.47288 * 60.00515 * 1 2 3 29 29 H 1.09001 * 109.46958 * 180.02562 * 1 2 3 30 30 H 1.08996 * 109.46694 * 299.99743 * 1 2 3 31 31 H 1.08999 * 109.47145 * 240.00073 * 2 1 3 32 32 H 1.09002 * 109.47477 * 120.00090 * 2 1 3 33 33 H 1.08003 * 127.25374 * 359.97438 * 4 3 2 34 34 H 1.09004 * 110.37224 * 274.75222 * 9 8 6 35 35 H 1.09004 * 110.36995 * 37.07505 * 9 8 6 36 36 H 1.09005 * 111.19240 * 279.19288 * 10 9 8 37 37 H 1.08996 * 110.94199 * 155.29286 * 10 9 8 38 38 H 0.97004 * 119.99836 * 88.51749 * 13 11 10 39 39 H 0.97003 * 119.99386 * 179.97438 * 17 16 14 40 40 H 1.09006 * 109.46442 * 61.45376 * 24 22 8 41 41 H 1.08992 * 109.47420 * 181.45321 * 24 22 8 42 42 H 1.09004 * 109.46795 * 301.45710 * 24 22 8 43 43 H 1.08998 * 109.47121 * 270.31166 * 27 26 25 44 44 H 1.08995 * 109.47187 * 30.32104 * 27 26 25 45 45 H 1.09010 * 109.46671 * 150.31537 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.2109 2.2094 1.0856 5 6 2.6923 3.4415 0.5831 6 6 3.0423 4.6376 1.3759 7 8 2.9258 4.6203 2.5859 8 7 3.4964 5.7462 0.7584 9 6 3.6919 5.9013 -0.6945 10 6 3.6051 7.4301 -0.9430 11 6 4.3132 7.9891 0.3193 12 1 5.3956 7.9787 0.1907 13 7 3.8389 9.3412 0.6239 14 6 4.4928 10.4285 0.1085 15 1 5.3585 10.2891 -0.5221 16 6 4.0431 11.7097 0.3967 17 7 2.9884 11.8796 1.1656 18 14 4.9355 13.1928 -0.3057 19 1 4.9103 13.1289 -1.7891 20 1 4.2624 14.4363 0.1482 21 1 6.3436 13.1923 0.1659 22 6 3.8851 6.9988 1.4228 23 1 4.7189 6.8157 2.1006 24 6 2.6951 7.5671 2.1988 25 7 2.7640 3.3205 -0.7274 26 7 2.3877 2.1448 -1.0831 27 6 2.3441 1.6613 -2.4653 28 1 -0.3633 0.5137 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3632 0.5138 0.8900 31 1 1.8934 -0.5138 -0.8900 32 1 1.8934 -0.5138 0.8900 33 1 2.0243 1.9526 2.1180 34 1 4.6707 5.5219 -0.9883 35 1 2.9037 5.3832 -1.2409 36 1 2.5683 7.7636 -0.9891 37 1 4.1435 7.7089 -1.8487 38 1 3.0616 9.4664 1.1905 39 1 2.6744 12.7749 1.3672 40 1 2.3901 6.8570 2.9675 41 1 2.9829 8.5082 2.6672 42 1 1.8647 7.7409 1.5144 43 1 1.3679 1.8823 -2.8969 44 1 3.1200 2.1573 -3.0484 45 1 2.5121 0.5843 -2.4789 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000987621669.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:53:03 Heat of formation + Delta-G solvation = 66.091776 kcal Electronic energy + Delta-G solvation = -25512.849865 eV Core-core repulsion = 21953.889080 eV Total energy + Delta-G solvation = -3558.960785 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 306.180 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -42.80287 -39.66272 -37.27752 -34.74105 -34.05830 -33.52769 -31.56738 -30.56028 -29.59842 -28.93695 -27.39295 -25.07975 -24.17486 -23.77048 -23.00806 -21.80232 -20.66716 -19.37073 -18.35203 -17.45648 -17.05786 -16.55180 -16.35237 -15.36678 -15.23158 -14.86971 -14.56174 -14.28064 -13.96409 -13.62240 -13.61717 -13.25921 -13.14028 -12.93846 -12.79862 -12.60020 -12.33924 -12.00202 -11.93531 -11.70388 -11.54884 -11.42253 -11.14475 -10.92248 -10.82596 -10.57733 -10.36144 -10.16611 -9.92813 -9.73638 -9.53947 -9.19031 -9.04923 -8.88601 -8.23484 -6.96928 -5.76990 -3.06360 1.60212 2.02869 2.29103 3.28777 3.44676 3.49280 3.50241 3.62352 4.15454 4.24707 4.50872 4.59513 4.67659 4.72287 4.87923 4.98267 5.10529 5.15966 5.23989 5.29500 5.41694 5.49081 5.56152 5.58488 5.69986 5.71889 5.76973 5.83912 5.86010 5.98218 6.17934 6.22064 6.33451 6.35235 6.47619 6.62922 6.66669 6.69105 6.84871 6.94894 7.08623 7.70052 7.78649 7.91560 8.41433 8.48538 9.53031 10.08976 10.44345 11.45507 Molecular weight = 306.18amu Principal moments of inertia in cm(-1) A = 0.030771 B = 0.002929 C = 0.002781 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 909.739272 B = 9557.594883 C =10065.602671 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.052 4.052 3 C 0.008 3.992 4 C -0.177 4.177 5 C -0.003 4.003 6 C 0.612 3.388 7 O -0.538 6.538 8 N -0.595 5.595 9 C 0.103 3.897 10 C -0.155 4.155 11 C 0.174 3.826 12 H 0.065 0.935 13 N -0.716 5.716 14 C -0.243 4.243 15 H 0.071 0.929 16 C -0.012 4.012 17 N -0.932 5.932 18 Si 0.909 3.091 19 H -0.286 1.286 20 H -0.291 1.291 21 H -0.286 1.286 22 C 0.128 3.872 23 H 0.072 0.928 24 C -0.158 4.158 25 N -0.256 5.256 26 N -0.286 5.286 27 C 0.086 3.914 28 H 0.053 0.947 29 H 0.063 0.937 30 H 0.063 0.937 31 H 0.073 0.927 32 H 0.089 0.911 33 H 0.160 0.840 34 H 0.061 0.939 35 H 0.084 0.916 36 H 0.073 0.927 37 H 0.074 0.926 38 H 0.391 0.609 39 H 0.256 0.744 40 H 0.060 0.940 41 H 0.080 0.920 42 H 0.055 0.945 43 H 0.083 0.917 44 H 0.097 0.903 45 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.095 -25.998 -7.004 27.102 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.091 4.091 3 C -0.116 4.116 4 C -0.205 4.205 5 C -0.163 4.163 6 C 0.399 3.601 7 O -0.414 6.414 8 N -0.328 5.328 9 C -0.021 4.021 10 C -0.196 4.196 11 C 0.062 3.938 12 H 0.083 0.917 13 N -0.359 5.359 14 C -0.374 4.374 15 H 0.089 0.911 16 C -0.208 4.208 17 N -0.580 5.580 18 Si 0.740 3.260 19 H -0.213 1.213 20 H -0.217 1.217 21 H -0.212 1.212 22 C 0.024 3.976 23 H 0.090 0.910 24 C -0.216 4.216 25 N -0.092 5.092 26 N -0.074 5.074 27 C -0.055 4.055 28 H 0.072 0.928 29 H 0.082 0.918 30 H 0.082 0.918 31 H 0.091 0.909 32 H 0.108 0.892 33 H 0.177 0.823 34 H 0.080 0.920 35 H 0.102 0.898 36 H 0.091 0.909 37 H 0.092 0.908 38 H 0.229 0.771 39 H 0.066 0.934 40 H 0.079 0.921 41 H 0.099 0.901 42 H 0.074 0.926 43 H 0.102 0.898 44 H 0.116 0.884 45 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -2.788 -25.341 -7.472 26.566 hybrid contribution -0.016 0.467 0.229 0.520 sum -2.804 -24.874 -7.243 26.058 Atomic orbital electron populations 1.21765 0.94035 1.02095 1.02722 1.20094 0.96431 0.88853 1.03680 1.21350 1.06299 0.96933 0.86977 1.21473 1.07030 0.92437 0.99583 1.21926 1.07987 0.96684 0.89747 1.16510 0.77440 0.80285 0.85904 1.90764 1.55046 1.82597 1.13013 1.48396 1.62989 1.12480 1.08951 1.22521 1.01337 0.97837 0.80370 1.23607 1.02589 0.92320 1.01086 1.21187 0.96773 0.85524 0.90339 0.91662 1.42649 1.35085 0.98602 1.59597 1.19215 1.08730 0.85129 1.24342 0.91127 1.24751 0.98232 0.97453 1.00340 1.69657 1.25807 1.21524 1.40972 0.86249 0.78874 0.82420 0.78496 1.21283 1.21725 1.21241 1.21913 0.97427 0.82855 0.95395 0.90982 1.22004 0.97627 1.01663 1.00336 1.73708 1.18526 1.01930 1.15003 1.45393 1.46007 1.08273 1.07689 1.22127 1.04807 1.00853 0.77684 0.92770 0.91812 0.91823 0.90868 0.89204 0.82253 0.92042 0.89769 0.90877 0.90777 0.77119 0.93368 0.92102 0.90129 0.92616 0.89816 0.88435 0.88887 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.82 9.90 37.16 0.37 -0.45 16 2 C -0.05 -0.30 6.21 -27.88 -0.17 -0.48 16 3 C 0.01 0.08 6.17 -82.21 -0.51 -0.42 16 4 C -0.18 -2.30 10.73 -39.36 -0.42 -2.72 16 5 C 0.00 -0.05 6.97 -82.76 -0.58 -0.63 16 6 C 0.61 11.20 7.64 -12.39 -0.09 11.10 16 7 O -0.54 -11.12 15.82 5.30 0.08 -11.03 16 8 N -0.60 -10.59 3.08 -164.02 -0.50 -11.10 16 9 C 0.10 1.62 6.17 -2.41 -0.01 1.60 16 10 C -0.15 -2.76 6.78 -24.46 -0.17 -2.92 16 11 C 0.17 3.53 3.48 -66.10 -0.23 3.30 16 12 H 0.07 1.31 8.09 -51.93 -0.42 0.89 16 13 N -0.72 -17.87 4.94 -51.65 -0.26 -18.12 16 14 C -0.24 -6.66 9.96 -15.06 -0.15 -6.81 16 15 H 0.07 1.86 7.83 -52.48 -0.41 1.45 16 16 C -0.01 -0.33 5.50 -17.43 -0.10 -0.42 16 17 N -0.93 -28.03 13.06 55.49 0.72 -27.30 16 18 Si 0.91 22.27 29.55 -169.99 -5.02 17.25 16 19 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 20 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16 21 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 22 C 0.13 2.46 3.48 -66.95 -0.23 2.22 16 23 H 0.07 1.40 8.14 -51.93 -0.42 0.97 16 24 C -0.16 -3.18 7.93 37.16 0.29 -2.88 16 25 N -0.26 -3.51 9.09 33.42 0.30 -3.21 16 26 N -0.29 -2.95 3.70 -63.85 -0.24 -3.18 16 27 C 0.09 0.46 11.11 59.85 0.66 1.12 16 28 H 0.05 0.31 8.14 -51.93 -0.42 -0.11 16 29 H 0.06 0.25 8.14 -51.93 -0.42 -0.17 16 30 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 31 H 0.07 0.29 6.86 -51.93 -0.36 -0.07 16 32 H 0.09 0.47 8.14 -51.93 -0.42 0.04 16 33 H 0.16 1.92 8.06 -52.48 -0.42 1.50 16 34 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 35 H 0.08 1.28 6.19 -51.93 -0.32 0.96 16 36 H 0.07 1.42 8.14 -51.93 -0.42 1.00 16 37 H 0.07 1.25 8.14 -51.93 -0.42 0.82 16 38 H 0.39 10.30 5.06 -40.82 -0.21 10.10 16 39 H 0.26 7.50 8.31 -40.82 -0.34 7.16 16 40 H 0.06 1.22 6.74 -51.93 -0.35 0.87 16 41 H 0.08 1.73 6.82 -51.93 -0.35 1.38 16 42 H 0.05 1.14 8.01 -51.93 -0.42 0.73 16 43 H 0.08 0.35 8.14 -51.93 -0.42 -0.07 16 44 H 0.10 0.47 8.14 -51.93 -0.42 0.05 16 45 H 0.09 0.25 6.88 -51.92 -0.36 -0.11 16 LS Contribution 362.83 15.07 5.47 5.47 Total: -1.00 -33.83 362.83 -7.75 -41.58 By element: Atomic # 1 Polarization: 15.03 SS G_CDS: -6.98 Total: 8.05 kcal Atomic # 6 Polarization: 2.94 SS G_CDS: -1.34 Total: 1.60 kcal Atomic # 7 Polarization: -62.95 SS G_CDS: 0.03 Total: -62.92 kcal Atomic # 8 Polarization: -11.12 SS G_CDS: 0.08 Total: -11.03 kcal Atomic # 14 Polarization: 22.27 SS G_CDS: -5.02 Total: 17.25 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -33.83 -7.75 -41.58 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000987621669.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.673 kcal (2) G-P(sol) polarization free energy of solvation -33.827 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 73.846 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.754 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.581 kcal (6) G-S(sol) free energy of system = (1) + (5) 66.092 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds