Wall clock time and date at job start Tue Mar 31 2020 03:56:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53010 * 109.46750 * 2 1 4 4 C 1.50700 * 109.47503 * 119.99871 * 2 1 3 5 5 C 1.39673 * 126.06673 * 275.00458 * 4 2 1 6 6 C 1.38409 * 105.35719 * 179.97438 * 5 4 2 7 7 C 1.47162 * 126.88433 * 180.02562 * 6 5 4 8 8 O 1.21632 * 120.00046 * 174.27398 * 7 6 5 9 9 N 1.34776 * 119.99968 * 354.27058 * 7 6 5 10 10 C 1.46500 * 119.99671 * 185.12760 * 9 7 6 11 11 C 1.52999 * 109.46896 * 179.97438 * 10 9 7 12 12 H 1.09001 * 112.74314 * 303.76340 * 11 10 9 13 13 C 1.53489 * 113.47164 * 172.94163 * 11 10 9 14 14 C 1.53496 * 83.34909 * 219.15282 * 13 11 10 15 15 N 1.47066 * 87.98485 * 26.06568 * 14 13 11 16 16 C 1.36936 * 136.06066 * 152.91177 * 15 14 13 17 17 H 1.08004 * 119.99949 * 179.97438 * 16 15 14 18 18 C 1.38813 * 119.99847 * 359.95371 * 16 15 14 19 19 N 1.31614 * 120.00003 * 359.97438 * 18 16 15 20 20 Si 1.86799 * 120.00029 * 179.97438 * 18 16 15 21 21 H 1.48511 * 109.46667 * 60.00297 * 20 18 16 22 22 H 1.48500 * 109.47122 * 179.97438 * 20 18 16 23 23 H 1.48496 * 109.47497 * 300.00652 * 20 18 16 24 24 N 1.36604 * 106.23006 * 359.97438 * 6 5 4 25 25 C 1.46497 * 125.18981 * 179.97438 * 24 6 5 26 26 N 1.28445 * 109.61849 * 359.75361 * 24 6 5 27 27 H 1.08996 * 109.47454 * 60.00069 * 1 2 3 28 28 H 1.08995 * 109.47526 * 299.99631 * 1 2 3 29 29 H 1.09004 * 109.46476 * 179.97438 * 1 2 3 30 30 H 1.08995 * 109.47526 * 240.00368 * 2 1 3 31 31 H 1.08995 * 109.46805 * 59.99927 * 3 2 1 32 32 H 1.08998 * 109.46608 * 180.02562 * 3 2 1 33 33 H 1.08996 * 109.47085 * 300.00157 * 3 2 1 34 34 H 1.07997 * 127.32817 * 359.97438 * 5 4 2 35 35 H 0.96998 * 119.99939 * 5.12794 * 9 7 6 36 36 H 1.08996 * 109.47170 * 300.00014 * 10 9 7 37 37 H 1.09000 * 109.47105 * 60.00085 * 10 9 7 38 38 H 1.09005 * 114.20688 * 332.73971 * 13 11 10 39 39 H 1.09000 * 114.21069 * 105.56562 * 13 11 10 40 40 H 1.08994 * 113.46712 * 271.28371 * 14 13 11 41 41 H 1.09003 * 113.46862 * 140.84218 * 14 13 11 42 42 H 0.96998 * 120.00369 * 179.97438 * 19 18 16 43 43 H 1.09003 * 109.47019 * 93.84928 * 25 24 6 44 44 H 1.09002 * 109.47533 * 213.85486 * 25 24 6 45 45 H 1.09005 * 109.47535 * 333.85474 * 25 24 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0324 -0.7104 1.2304 5 6 2.2137 -0.1403 2.4926 6 6 2.6850 -1.1659 3.2937 7 6 3.0337 -1.0828 4.7210 8 8 3.3389 -2.0892 5.3321 9 7 3.0148 0.1085 5.3511 10 6 3.4692 0.2097 6.7401 11 6 3.3464 1.6597 7.2125 12 1 3.8905 2.3577 6.5762 13 6 3.6357 1.8418 8.7089 14 6 2.4707 2.8382 8.6305 15 7 1.9609 2.0721 7.4833 16 6 0.7355 1.8439 6.9162 17 1 0.6536 1.2139 6.0428 18 6 -0.4014 2.4218 7.4643 19 7 -0.3016 3.1887 8.5292 20 14 -2.0729 2.1110 6.6903 21 1 -2.3649 0.6550 6.7112 22 1 -3.1166 2.8357 7.4588 23 1 -2.0659 2.5943 5.2863 24 7 2.7606 -2.2710 2.4942 25 6 3.2132 -3.5958 2.9257 26 7 2.3700 -1.9723 1.3076 27 1 -0.3634 0.5138 -0.8899 28 1 -0.3634 0.5137 0.8900 29 1 -0.3632 -1.0277 -0.0005 30 1 1.8934 -0.5137 -0.8900 31 1 1.6765 1.9564 0.8900 32 1 3.1299 1.4426 -0.0005 33 1 1.6765 1.9564 -0.8899 34 1 2.0260 0.8831 2.7821 35 1 2.7003 0.8988 4.8848 36 1 2.8543 -0.4318 7.3713 37 1 4.5103 -0.1065 6.8058 38 1 3.4291 0.9594 9.3146 39 1 4.6012 2.2992 8.9250 40 1 2.7819 3.8504 8.3727 41 1 1.8136 2.8070 9.4997 42 1 -1.0960 3.5929 8.9120 43 1 2.3520 -4.1960 3.2197 44 1 3.7350 -4.0869 2.1043 45 1 3.8892 -3.4904 3.7742 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001038878113.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:56:58 Heat of formation + Delta-G solvation = 88.851009 kcal Electronic energy + Delta-G solvation = -25617.956149 eV Core-core repulsion = 22059.982278 eV Total energy + Delta-G solvation = -3557.973871 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 306.180 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -42.52849 -39.29218 -38.06504 -36.00998 -34.28490 -32.37377 -32.21455 -31.02429 -28.10477 -27.63770 -27.18435 -26.74525 -23.52588 -23.48410 -22.64904 -21.56318 -20.31481 -19.53720 -19.02189 -17.76190 -16.65225 -16.30632 -15.99840 -15.54463 -15.28132 -14.78261 -14.43129 -14.25593 -14.03692 -13.82846 -13.69741 -13.39181 -13.24304 -12.97306 -12.58476 -12.49337 -12.14043 -11.96541 -11.57129 -11.47933 -11.25405 -11.19846 -11.15349 -11.02373 -10.79219 -10.62647 -10.52079 -10.09437 -9.87956 -9.82661 -9.30532 -9.10775 -8.84506 -8.84241 -8.63401 -6.94110 -5.80223 -3.13198 1.36153 2.42116 2.57410 3.36561 3.37481 3.41790 3.42333 3.45855 4.33313 4.40289 4.66244 4.86310 4.94953 5.10369 5.13562 5.15213 5.30605 5.33740 5.36477 5.48306 5.51310 5.56430 5.59115 5.63881 5.69098 5.80888 5.86371 5.88265 5.96203 6.01655 6.19333 6.25974 6.27036 6.35471 6.51333 6.55005 6.63954 6.76085 6.77378 7.18590 7.34746 7.54154 7.70879 7.93893 8.10173 8.34960 8.99247 9.66826 10.58663 11.36736 Molecular weight = 306.18amu Principal moments of inertia in cm(-1) A = 0.011500 B = 0.004693 C = 0.003833 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2434.114976 B = 5964.683943 C = 7303.599847 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.007 4.007 3 C -0.145 4.145 4 C 0.031 3.969 5 C -0.181 4.181 6 C -0.030 4.030 7 C 0.586 3.414 8 O -0.552 6.552 9 N -0.694 5.694 10 C 0.123 3.877 11 C 0.126 3.874 12 H 0.050 0.950 13 C -0.160 4.160 14 C 0.151 3.849 15 N -0.601 5.601 16 C -0.217 4.217 17 H 0.080 0.920 18 C -0.004 4.004 19 N -0.918 5.918 20 Si 0.907 3.093 21 H -0.285 1.285 22 H -0.289 1.289 23 H -0.284 1.284 24 N -0.261 5.261 25 C 0.087 3.913 26 N -0.282 5.282 27 H 0.060 0.940 28 H 0.060 0.940 29 H 0.054 0.946 30 H 0.081 0.919 31 H 0.063 0.937 32 H 0.057 0.943 33 H 0.061 0.939 34 H 0.161 0.839 35 H 0.407 0.593 36 H 0.075 0.925 37 H 0.062 0.938 38 H 0.080 0.920 39 H 0.059 0.941 40 H 0.025 0.975 41 H 0.072 0.928 42 H 0.254 0.746 43 H 0.082 0.918 44 H 0.088 0.912 45 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.007 -5.877 -12.832 16.227 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.028 4.028 3 C -0.203 4.203 4 C -0.125 4.125 5 C -0.210 4.210 6 C -0.159 4.159 7 C 0.371 3.629 8 O -0.432 6.432 9 N -0.344 5.344 10 C -0.002 4.002 11 C 0.018 3.982 12 H 0.067 0.933 13 C -0.199 4.199 14 C 0.026 3.974 15 N -0.326 5.326 16 C -0.344 4.344 17 H 0.097 0.903 18 C -0.201 4.201 19 N -0.564 5.564 20 Si 0.737 3.263 21 H -0.211 1.211 22 H -0.215 1.215 23 H -0.211 1.211 24 N -0.048 5.048 25 C -0.053 4.053 26 N -0.115 5.115 27 H 0.079 0.921 28 H 0.080 0.920 29 H 0.074 0.926 30 H 0.099 0.901 31 H 0.082 0.918 32 H 0.076 0.924 33 H 0.080 0.920 34 H 0.178 0.822 35 H 0.242 0.758 36 H 0.093 0.907 37 H 0.080 0.920 38 H 0.098 0.902 39 H 0.077 0.923 40 H 0.043 0.957 41 H 0.091 0.909 42 H 0.064 0.936 43 H 0.101 0.899 44 H 0.107 0.893 45 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges 8.001 -7.685 -12.953 17.055 hybrid contribution -1.247 0.967 -0.150 1.586 sum 6.754 -6.717 -13.103 16.200 Atomic orbital electron populations 1.21832 0.93971 1.02101 1.02266 1.19398 0.95631 0.94957 0.92768 1.21840 1.01249 0.94717 1.02458 1.21895 1.04288 0.90019 0.96325 1.22121 1.06290 0.99821 0.92751 1.21486 1.11245 0.88920 0.94203 1.16907 0.77821 0.84186 0.83955 1.90739 1.50356 1.34893 1.67204 1.45676 1.64382 1.09532 1.14786 1.21911 0.98563 0.99305 0.80378 1.22435 0.88721 0.91916 0.95082 0.93315 1.23663 0.99013 1.01507 0.95745 1.22031 0.90580 0.92132 0.92686 1.45671 0.99375 1.55191 1.32410 1.18791 0.81356 1.24952 1.09281 0.90269 1.24754 0.97605 0.99627 0.98147 1.69809 1.28144 1.35550 1.22903 0.86287 0.83861 0.77722 0.78450 1.21137 1.21519 1.21051 1.45477 1.44715 1.09489 1.05072 1.22317 1.01905 0.78849 1.02229 1.73064 1.17427 1.17728 1.03241 0.92082 0.92044 0.92647 0.90063 0.91830 0.92437 0.92020 0.82195 0.75766 0.90671 0.91991 0.90164 0.92279 0.95687 0.90949 0.93595 0.89924 0.89293 0.87016 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.49 9.18 37.16 0.34 -1.15 16 2 C -0.01 -0.08 3.38 -91.77 -0.31 -0.39 16 3 C -0.14 -1.35 8.79 37.16 0.33 -1.02 16 4 C 0.03 0.43 6.13 -82.47 -0.51 -0.07 16 5 C -0.18 -2.60 9.65 -38.98 -0.38 -2.98 16 6 C -0.03 -0.48 6.96 -82.06 -0.57 -1.05 16 7 C 0.59 10.10 7.78 -12.64 -0.10 10.00 16 8 O -0.55 -10.49 14.69 5.25 0.08 -10.41 16 9 N -0.69 -11.67 5.32 -61.47 -0.33 -12.00 16 10 C 0.12 2.13 5.53 -4.04 -0.02 2.11 16 11 C 0.13 2.33 4.10 -72.39 -0.30 2.04 16 12 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 13 C -0.16 -2.80 8.03 -26.22 -0.21 -3.01 16 14 C 0.15 3.37 7.39 -8.50 -0.06 3.30 16 15 N -0.60 -14.21 3.65 -176.98 -0.65 -14.86 16 16 C -0.22 -5.69 10.55 -15.06 -0.16 -5.85 16 17 H 0.08 2.00 7.50 -52.48 -0.39 1.61 16 18 C 0.00 -0.12 5.50 -17.43 -0.10 -0.22 16 19 N -0.92 -26.54 11.51 55.49 0.64 -25.90 16 20 Si 0.91 21.85 29.55 -169.99 -5.02 16.82 16 21 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 22 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 23 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 24 N -0.26 -3.87 3.75 -63.88 -0.24 -4.10 16 25 C 0.09 1.01 10.88 59.85 0.65 1.66 16 26 N -0.28 -4.20 11.90 33.64 0.40 -3.80 16 27 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 28 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 29 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 30 H 0.08 0.83 8.14 -51.93 -0.42 0.40 16 31 H 0.06 0.62 7.37 -51.93 -0.38 0.23 16 32 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 33 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 34 H 0.16 2.06 7.05 -52.49 -0.37 1.69 16 35 H 0.41 6.58 7.41 -40.82 -0.30 6.27 16 36 H 0.07 1.49 8.14 -51.93 -0.42 1.07 16 37 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 38 H 0.08 1.40 8.12 -51.93 -0.42 0.98 16 39 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 40 H 0.03 0.56 8.14 -51.93 -0.42 0.14 16 41 H 0.07 1.81 7.12 -51.93 -0.37 1.44 16 42 H 0.25 7.20 8.31 -40.82 -0.34 6.86 16 43 H 0.08 0.89 8.14 -51.93 -0.42 0.46 16 44 H 0.09 0.80 8.14 -51.93 -0.42 0.38 16 45 H 0.11 1.36 6.23 -51.93 -0.32 1.04 16 LS Contribution 370.49 15.07 5.58 5.58 Total: -1.00 -31.89 370.49 -8.12 -40.01 By element: Atomic # 1 Polarization: 12.48 SS G_CDS: -7.19 Total: 5.29 kcal Atomic # 6 Polarization: 4.76 SS G_CDS: -1.39 Total: 3.37 kcal Atomic # 7 Polarization: -60.49 SS G_CDS: -0.17 Total: -60.66 kcal Atomic # 8 Polarization: -10.49 SS G_CDS: 0.08 Total: -10.41 kcal Atomic # 14 Polarization: 21.85 SS G_CDS: -5.02 Total: 16.82 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -31.89 -8.12 -40.01 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001038878113.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 128.863 kcal (2) G-P(sol) polarization free energy of solvation -31.890 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 96.973 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.122 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.012 kcal (6) G-S(sol) free energy of system = (1) + (5) 88.851 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds