Wall clock time and date at job start Tue Mar 31 2020 04:02:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52992 * 109.47312 * 2 1 4 4 N 1.46502 * 109.46560 * 119.99681 * 2 1 3 5 5 C 1.34949 * 126.04274 * 274.97328 * 4 2 1 6 6 C 1.35314 * 107.74932 * 179.75617 * 5 4 2 7 7 C 1.39867 * 107.91967 * 0.39087 * 6 5 4 8 8 C 1.50697 * 125.89835 * 179.86767 * 7 6 5 9 9 C 1.50703 * 109.47585 * 124.71971 * 8 7 6 10 10 O 1.21287 * 119.99478 * 0.02562 * 9 8 7 11 11 N 1.34774 * 120.00261 * 180.02562 * 9 8 7 12 12 C 1.46496 * 119.99894 * 359.97438 * 11 9 8 13 13 C 1.46500 * 119.99905 * 179.97438 * 11 9 8 14 14 C 1.53495 * 114.20946 * 239.99851 * 13 11 9 15 15 N 1.47064 * 87.98647 * 220.14789 * 14 13 11 16 16 C 1.36929 * 136.05710 * 207.07951 * 15 14 13 17 17 H 1.08004 * 120.00104 * 6.50631 * 16 15 14 18 18 C 1.38818 * 120.00175 * 186.49548 * 16 15 14 19 19 N 1.31615 * 119.99847 * 6.43003 * 18 16 15 20 20 Si 1.86802 * 119.99925 * 186.42380 * 18 16 15 21 21 H 1.48502 * 109.46990 * 265.01960 * 20 18 16 22 22 H 1.48491 * 109.47236 * 25.02406 * 20 18 16 23 23 H 1.48506 * 109.46777 * 145.02360 * 20 18 16 24 24 C 1.47067 * 87.88549 * 27.33957 * 15 14 13 25 25 N 1.30843 * 108.20235 * 359.60509 * 7 6 5 26 26 H 1.08999 * 109.47838 * 300.00198 * 1 2 3 27 27 H 1.09006 * 109.46997 * 60.00256 * 1 2 3 28 28 H 1.09004 * 109.47710 * 180.02562 * 1 2 3 29 29 H 1.08998 * 109.47319 * 239.99239 * 2 1 3 30 30 H 1.09003 * 109.47236 * 179.97438 * 3 2 1 31 31 H 1.08997 * 109.47457 * 299.99834 * 3 2 1 32 32 H 1.09000 * 109.47423 * 59.99914 * 3 2 1 33 33 H 1.08004 * 126.12314 * 0.02562 * 5 4 2 34 34 H 1.07998 * 126.04093 * 180.28226 * 6 5 4 35 35 H 1.08998 * 109.47439 * 4.71502 * 8 7 6 36 36 H 1.09009 * 109.47298 * 244.71699 * 8 7 6 37 37 H 1.09001 * 109.46983 * 270.00218 * 12 11 9 38 38 H 1.08991 * 109.47247 * 30.00032 * 12 11 9 39 39 H 1.09001 * 109.46779 * 150.00246 * 12 11 9 40 40 H 1.09008 * 113.28018 * 13.06715 * 13 11 9 41 41 H 1.08996 * 113.46596 * 105.36686 * 14 13 11 42 42 H 1.09007 * 113.51449 * 334.93936 * 14 13 11 43 43 H 0.97003 * 120.00226 * 179.97438 * 19 18 16 44 44 H 1.09005 * 113.46771 * 87.43754 * 24 15 14 45 45 H 1.09002 * 113.46911 * 217.87594 * 24 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 7 2.0182 -0.6906 1.1963 5 6 2.1936 -0.1392 2.4154 6 6 2.6513 -1.1064 3.2436 7 6 2.7678 -2.2873 2.5032 8 6 3.2452 -3.6164 3.0291 9 6 2.2042 -4.6701 2.7508 10 8 1.1761 -4.3711 2.1810 11 7 2.4158 -5.9444 3.1350 12 6 3.6579 -6.3056 3.8226 13 6 1.4036 -6.9685 2.8649 14 6 0.8518 -7.6551 4.1220 15 7 0.8813 -8.9238 3.3789 16 6 0.1938 -10.1073 3.4209 17 1 -0.6592 -10.2134 4.0748 18 6 0.5929 -11.1706 2.6228 19 7 1.7036 -11.0865 1.9217 20 14 -0.4462 -12.7209 2.5441 21 1 0.0743 -13.7156 3.5161 22 1 -1.8544 -12.3905 2.8799 23 1 -0.3845 -13.2891 1.1734 24 6 1.9787 -8.3647 2.5752 25 7 2.3855 -2.0400 1.2766 26 1 -0.3635 0.5138 0.8899 27 1 -0.3633 0.5138 -0.8901 28 1 -0.3635 -1.0277 0.0005 29 1 1.8933 -0.5139 -0.8899 30 1 3.1300 1.4424 0.0005 31 1 1.6767 1.9563 -0.8900 32 1 1.6767 1.9563 0.8900 33 1 1.9989 0.8889 2.6832 34 1 2.8868 -0.9872 4.2909 35 1 3.4103 -3.5438 4.1040 36 1 4.1784 -3.8885 2.5357 37 1 4.4092 -6.5945 3.0877 38 1 4.0186 -5.4505 4.3941 39 1 3.4699 -7.1405 4.4976 40 1 0.6377 -6.6423 2.1611 41 1 -0.1545 -7.3308 4.3874 42 1 1.5390 -7.6312 4.9678 43 1 1.9828 -11.8297 1.3642 44 1 2.9638 -8.5276 3.0127 45 1 1.9327 -8.6451 1.5229 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001043407549.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:02:47 Heat of formation + Delta-G solvation = 108.452460 kcal Electronic energy + Delta-G solvation = -24922.029782 eV Core-core repulsion = 21364.905894 eV Total energy + Delta-G solvation = -3557.123888 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 306.180 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.30332 -39.65781 -37.68448 -36.00413 -34.38119 -32.22698 -31.66472 -29.97103 -28.43644 -27.66997 -27.33413 -26.51217 -24.56219 -23.49026 -22.70936 -20.64465 -20.16468 -19.22427 -18.35501 -17.23215 -16.97102 -16.52146 -15.81607 -15.50620 -15.14181 -14.74351 -14.71801 -14.21262 -13.83605 -13.70882 -13.49405 -13.12240 -12.98150 -12.82424 -12.52212 -12.42893 -12.39142 -12.06427 -11.92241 -11.78795 -11.66673 -11.44669 -11.42872 -11.21129 -10.93853 -10.73281 -10.49242 -10.14321 -10.08693 -9.43535 -9.41458 -9.14089 -8.78048 -8.55076 -8.00365 -6.89876 -5.79713 -3.10816 1.92678 2.41313 2.75329 3.01667 3.38507 3.43715 3.47043 3.49549 4.19231 4.47811 4.52489 4.62433 4.67037 4.71814 4.91023 5.07519 5.08545 5.24364 5.31573 5.32606 5.38580 5.41132 5.46226 5.47114 5.54972 5.56437 5.67030 5.79830 5.85966 5.86774 5.93906 6.01425 6.14147 6.23909 6.49648 6.62071 6.66048 6.86527 7.03434 7.16951 7.38436 7.50658 7.81045 7.86448 7.95016 8.60222 9.02177 9.68442 10.61883 11.39197 Molecular weight = 306.18amu Principal moments of inertia in cm(-1) A = 0.026943 B = 0.002610 C = 0.002480 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1038.986249 B =10725.807731 C =11286.788378 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.155 3.845 3 C -0.162 4.162 4 N -0.368 5.368 5 C 0.048 3.952 6 C -0.267 4.267 7 C 0.084 3.916 8 C -0.058 4.058 9 C 0.513 3.487 10 O -0.529 6.529 11 N -0.600 5.600 12 C 0.076 3.924 13 C 0.088 3.912 14 C 0.105 3.895 15 N -0.604 5.604 16 C -0.218 4.218 17 H 0.083 0.917 18 C -0.007 4.007 19 N -0.919 5.919 20 Si 0.914 3.086 21 H -0.288 1.288 22 H -0.279 1.279 23 H -0.289 1.289 24 C 0.156 3.844 25 N -0.260 5.260 26 H 0.060 0.940 27 H 0.075 0.925 28 H 0.069 0.931 29 H 0.101 0.899 30 H 0.065 0.935 31 H 0.081 0.919 32 H 0.065 0.935 33 H 0.167 0.833 34 H 0.145 0.855 35 H 0.109 0.891 36 H 0.107 0.893 37 H 0.057 0.943 38 H 0.066 0.934 39 H 0.078 0.922 40 H 0.117 0.883 41 H 0.042 0.958 42 H 0.034 0.966 43 H 0.255 0.745 44 H 0.035 0.965 45 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.699 25.508 0.860 26.151 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.053 3.947 3 C -0.221 4.221 4 N -0.151 5.151 5 C -0.097 4.097 6 C -0.297 4.297 7 C -0.084 4.084 8 C -0.100 4.100 9 C 0.300 3.700 10 O -0.405 6.405 11 N -0.334 5.334 12 C -0.067 4.067 13 C -0.016 4.016 14 C -0.022 4.022 15 N -0.330 5.330 16 C -0.345 4.345 17 H 0.101 0.899 18 C -0.204 4.204 19 N -0.565 5.565 20 Si 0.744 3.256 21 H -0.216 1.216 22 H -0.204 1.204 23 H -0.215 1.215 24 C 0.029 3.971 25 N -0.081 5.081 26 H 0.080 0.920 27 H 0.093 0.907 28 H 0.088 0.912 29 H 0.119 0.881 30 H 0.085 0.915 31 H 0.099 0.901 32 H 0.084 0.916 33 H 0.185 0.815 34 H 0.163 0.837 35 H 0.128 0.872 36 H 0.125 0.875 37 H 0.076 0.924 38 H 0.084 0.916 39 H 0.097 0.903 40 H 0.135 0.865 41 H 0.060 0.940 42 H 0.051 0.949 43 H 0.064 0.936 44 H 0.053 0.947 45 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 4.817 24.902 -0.848 25.378 hybrid contribution -0.208 -0.605 0.965 1.158 sum 4.609 24.297 0.118 24.730 Atomic orbital electron populations 1.22239 0.93622 1.03790 1.02703 1.21218 0.94911 0.92440 0.86117 1.22184 1.02203 0.94174 1.03501 1.48860 1.50580 1.07293 1.08367 1.22332 1.01751 0.99702 0.85960 1.21303 1.14806 0.92463 1.01083 1.21579 0.99903 0.95155 0.91727 1.20089 0.98821 0.88460 1.02623 1.20314 0.87858 0.82851 0.79015 1.90715 1.28100 1.80584 1.41094 1.47877 1.19564 1.07998 1.57912 1.21808 0.86020 1.01597 0.97323 1.23707 0.91628 0.86852 0.99405 1.22823 0.98163 0.87127 0.94089 1.45347 1.38756 1.12198 1.36668 1.18919 1.07013 0.87022 1.21567 0.89919 1.24848 0.97362 0.97983 1.00195 1.69851 1.22451 1.31948 1.32245 0.86066 0.79573 0.82815 0.77108 1.21569 1.20441 1.21534 1.22399 0.91462 0.85301 0.97936 1.77469 1.18643 0.91906 1.20063 0.92048 0.90657 0.91173 0.88055 0.91545 0.90065 0.91624 0.81532 0.83734 0.87242 0.87519 0.92422 0.91550 0.90330 0.86505 0.93980 0.94889 0.93556 0.94739 0.91878 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.39 9.52 37.16 0.35 -1.04 16 2 C 0.15 1.37 3.93 -67.94 -0.27 1.11 16 3 C -0.16 -0.89 8.83 37.15 0.33 -0.56 16 4 N -0.37 -4.50 3.53 -54.87 -0.19 -4.69 16 5 C 0.05 0.50 10.59 -17.22 -0.18 0.32 16 6 C -0.27 -3.08 10.72 -40.01 -0.43 -3.51 16 7 C 0.08 1.19 6.02 -82.41 -0.50 0.69 16 8 C -0.06 -0.72 4.83 -29.03 -0.14 -0.86 16 9 C 0.51 8.72 7.66 -10.99 -0.08 8.64 16 10 O -0.53 -11.31 15.07 5.55 0.08 -11.22 16 11 N -0.60 -10.06 3.11 -173.56 -0.54 -10.60 16 12 C 0.08 0.96 8.92 59.84 0.53 1.50 16 13 C 0.09 1.83 4.57 -67.68 -0.31 1.52 16 14 C 0.11 2.29 8.24 -8.51 -0.07 2.22 16 15 N -0.60 -16.01 3.76 -184.62 -0.69 -16.71 16 16 C -0.22 -6.26 10.73 -15.06 -0.16 -6.42 16 17 H 0.08 2.28 7.84 -52.48 -0.41 1.87 16 18 C -0.01 -0.20 5.50 -17.43 -0.10 -0.30 16 19 N -0.92 -27.67 11.81 55.49 0.66 -27.01 16 20 Si 0.91 22.43 29.56 -169.99 -5.02 17.40 16 21 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 22 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 23 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 24 C 0.16 3.74 6.65 -8.37 -0.06 3.69 16 25 N -0.26 -4.15 11.92 33.67 0.40 -3.75 16 26 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 27 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 28 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 29 H 0.10 0.93 8.14 -51.93 -0.42 0.51 16 30 H 0.07 0.39 8.14 -51.93 -0.42 -0.04 16 31 H 0.08 0.30 8.14 -51.93 -0.42 -0.12 16 32 H 0.06 0.30 7.16 -51.93 -0.37 -0.07 16 33 H 0.17 1.09 7.26 -52.48 -0.38 0.71 16 34 H 0.14 1.28 8.06 -52.49 -0.42 0.86 16 35 H 0.11 1.00 7.38 -51.93 -0.38 0.61 16 36 H 0.11 1.12 8.11 -51.92 -0.42 0.70 16 37 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 38 H 0.07 0.60 6.44 -51.93 -0.33 0.26 16 39 H 0.08 1.08 6.18 -51.93 -0.32 0.76 16 40 H 0.12 2.68 7.29 -51.92 -0.38 2.30 16 41 H 0.04 0.90 8.14 -51.93 -0.42 0.48 16 42 H 0.03 0.67 6.97 -51.93 -0.36 0.31 16 43 H 0.25 7.40 8.31 -40.82 -0.34 7.06 16 44 H 0.03 0.81 6.57 -51.93 -0.34 0.47 16 45 H 0.06 1.70 7.57 -51.93 -0.39 1.30 16 LS Contribution 367.06 15.07 5.53 5.53 Total: -1.00 -37.04 367.06 -7.90 -44.93 By element: Atomic # 1 Polarization: 6.16 SS G_CDS: -7.04 Total: -0.88 kcal Atomic # 6 Polarization: 8.07 SS G_CDS: -1.08 Total: 7.00 kcal Atomic # 7 Polarization: -62.39 SS G_CDS: -0.37 Total: -62.76 kcal Atomic # 8 Polarization: -11.31 SS G_CDS: 0.08 Total: -11.22 kcal Atomic # 14 Polarization: 22.43 SS G_CDS: -5.02 Total: 17.40 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -37.04 -7.90 -44.93 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001043407549.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 153.383 kcal (2) G-P(sol) polarization free energy of solvation -37.036 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 116.348 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.895 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.931 kcal (6) G-S(sol) free energy of system = (1) + (5) 108.452 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds