Wall clock time and date at job start Tue Mar 31 2020 04:17:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09000 * 109.58760 * 2 1 4 4 C 1.53193 * 109.58594 * 239.57034 * 2 1 3 5 5 C 1.53036 * 109.31703 * 185.57731 * 4 2 1 6 6 H 1.08997 * 109.44975 * 301.35575 * 5 4 2 7 7 N 1.46498 * 109.46364 * 181.38547 * 5 4 2 8 8 C 1.36934 * 119.99894 * 154.93160 * 7 5 4 9 9 H 1.08003 * 120.00140 * 0.02562 * 8 7 5 10 10 C 1.38815 * 119.99978 * 180.02562 * 8 7 5 11 11 N 1.31619 * 119.99769 * 0.02562 * 10 8 7 12 12 Si 1.86794 * 119.99976 * 180.02562 * 10 8 7 13 13 H 1.48497 * 109.47546 * 359.97438 * 12 10 8 14 14 H 1.48502 * 109.47347 * 119.99770 * 12 10 8 15 15 H 1.48507 * 109.47168 * 239.99673 * 12 10 8 16 16 C 1.53042 * 109.53724 * 61.36519 * 5 4 2 17 17 C 1.53195 * 109.31533 * 298.64134 * 16 5 4 18 18 N 1.46923 * 108.77743 * 54.62819 * 17 16 5 19 19 C 1.34779 * 120.63132 * 126.37340 * 18 17 16 20 20 O 1.21274 * 120.00016 * 174.21636 * 19 18 17 21 21 C 1.50707 * 119.99435 * 354.21408 * 19 18 17 22 22 C 1.53007 * 109.46507 * 180.02562 * 21 19 18 23 23 C 1.50697 * 109.46504 * 180.02562 * 22 21 19 24 24 N 1.30499 * 125.65370 * 304.68785 * 23 22 21 25 25 C 1.34127 * 109.25691 * 179.89542 * 24 23 22 26 26 C 1.34663 * 108.02143 * 0.37164 * 25 24 23 27 27 N 1.35051 * 125.64639 * 124.99978 * 23 22 21 28 28 H 0.96994 * 126.39861 * 359.94286 * 27 23 22 29 29 H 1.09008 * 109.46935 * 305.50052 * 1 2 3 30 30 H 1.08995 * 109.47648 * 65.50388 * 1 2 3 31 31 H 1.09003 * 109.47715 * 185.50551 * 1 2 3 32 32 H 1.09007 * 109.49463 * 65.62437 * 4 2 1 33 33 H 1.09000 * 109.49818 * 305.53584 * 4 2 1 34 34 H 0.96996 * 120.00135 * 334.93425 * 7 5 4 35 35 H 0.96997 * 120.00063 * 180.02562 * 11 10 8 36 36 H 1.09003 * 109.49284 * 58.58873 * 16 5 4 37 37 H 1.08995 * 109.50059 * 178.68408 * 16 5 4 38 38 H 1.08994 * 109.59116 * 174.42313 * 17 16 5 39 39 H 1.09001 * 109.58383 * 294.84486 * 17 16 5 40 40 H 1.09000 * 109.47251 * 299.99897 * 21 19 18 41 41 H 1.08998 * 109.47160 * 60.00126 * 21 19 18 42 42 H 1.09000 * 109.47203 * 299.99830 * 22 21 19 43 43 H 1.08998 * 109.47387 * 60.00169 * 22 21 19 44 44 H 1.07997 * 125.99007 * 180.18656 * 25 24 23 45 45 H 1.08001 * 126.59333 * 179.73897 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8954 1.0269 0.0000 4 6 2.0435 -0.7310 -1.2445 5 6 3.5674 -0.8495 -1.1692 6 1 4.0059 0.1459 -1.0995 7 7 4.0651 -1.5189 -2.3735 8 6 5.3491 -1.3013 -2.7967 9 1 5.9951 -0.6366 -2.2423 10 6 5.8205 -1.9351 -3.9382 11 7 5.0331 -2.7448 -4.6140 12 14 7.5723 -1.6389 -4.5150 13 1 8.2454 -0.6936 -3.5884 14 1 8.3120 -2.9264 -4.5328 15 1 7.5520 -1.0607 -5.8827 16 6 3.9569 -1.6657 0.0655 17 6 3.4650 -0.9454 1.3249 18 7 2.0225 -0.6981 1.1954 19 6 1.1673 -1.1042 2.1546 20 8 -0.0056 -0.8033 2.0883 21 6 1.6687 -1.9325 3.3095 22 6 0.5042 -2.2575 4.2473 23 6 1.0057 -3.0852 5.4025 24 7 1.6563 -4.2122 5.3049 25 6 1.9445 -4.6645 6.5343 26 6 1.4468 -3.7885 7.4278 27 7 0.8511 -2.7864 6.7104 28 1 0.4021 -2.0071 7.0736 29 1 -0.3633 0.5968 0.8367 30 1 -0.3634 0.4261 -0.9351 31 1 -0.3635 -1.0229 0.0986 32 1 1.7659 -0.1695 -2.1366 33 1 1.6028 -1.7269 -1.2892 34 1 3.4850 -2.1161 -2.8713 35 1 5.3626 -3.1880 -5.4115 36 1 3.4982 -2.6529 0.0085 37 1 5.0411 -1.7696 0.1058 38 1 3.6518 -1.5690 2.1991 39 1 3.9903 0.0037 1.4316 40 1 2.1001 -2.8594 2.9317 41 1 2.4293 -1.3733 3.8544 42 1 0.0724 -1.3308 4.6252 43 1 -0.2561 -2.8169 3.7022 44 1 2.4792 -5.5735 6.7669 45 1 1.5057 -3.8627 8.5036 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001044576310.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:17:07 Heat of formation + Delta-G solvation = 38.568475 kcal Electronic energy + Delta-G solvation = -25193.872928 eV Core-core repulsion = 21633.718643 eV Total energy + Delta-G solvation = -3560.154285 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 306.180 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -42.27500 -40.38354 -37.47352 -34.50534 -34.20373 -32.73169 -32.35360 -31.90435 -29.42172 -28.81751 -26.96250 -25.15301 -24.13428 -22.89197 -21.84163 -21.63545 -20.56003 -20.02360 -18.79149 -18.19680 -17.10129 -16.61930 -16.01973 -15.79869 -15.05205 -14.83296 -14.65707 -14.17233 -13.94815 -13.84487 -13.71069 -13.59490 -13.34737 -12.91655 -12.71247 -12.53999 -12.26662 -12.00434 -11.89991 -11.57726 -11.38055 -11.28028 -10.91447 -10.82470 -10.73155 -10.41487 -10.28189 -10.23581 -10.20092 -9.82480 -9.70981 -8.97695 -8.90878 -8.63547 -8.38314 -6.97218 -5.77242 -3.06377 1.76867 2.70063 2.77982 2.90280 3.17648 3.42648 3.48047 3.50513 4.15566 4.54763 4.57823 4.77988 4.85228 4.89971 5.07879 5.15806 5.19450 5.30944 5.35630 5.39529 5.42197 5.51488 5.59599 5.66776 5.73217 5.80950 5.85513 5.87804 5.93967 6.03428 6.16881 6.28874 6.40810 6.47248 6.49323 6.51242 6.56919 6.77285 6.93179 7.06356 7.07375 7.58462 7.69073 7.85803 8.29454 8.41023 9.52278 10.10066 10.44683 11.45411 Molecular weight = 306.18amu Principal moments of inertia in cm(-1) A = 0.017913 B = 0.002929 C = 0.002621 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1562.724868 B = 9557.600049 C =10682.193956 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.147 3.853 3 H 0.069 0.931 4 C -0.135 4.135 5 C 0.179 3.821 6 H 0.047 0.953 7 N -0.724 5.724 8 C -0.238 4.238 9 H 0.071 0.929 10 C -0.014 4.014 11 N -0.932 5.932 12 Si 0.906 3.094 13 H -0.280 1.280 14 H -0.292 1.292 15 H -0.292 1.292 16 C -0.152 4.152 17 C 0.106 3.894 18 N -0.602 5.602 19 C 0.516 3.484 20 O -0.545 6.545 21 C -0.133 4.133 22 C -0.016 4.016 23 C 0.212 3.788 24 N -0.485 5.485 25 C -0.026 4.026 26 C -0.063 4.063 27 N -0.568 5.568 28 H 0.418 0.582 29 H 0.074 0.926 30 H 0.042 0.958 31 H 0.062 0.938 32 H 0.074 0.926 33 H 0.064 0.936 34 H 0.384 0.616 35 H 0.255 0.745 36 H 0.061 0.939 37 H 0.075 0.925 38 H 0.079 0.921 39 H 0.067 0.933 40 H 0.107 0.893 41 H 0.090 0.910 42 H 0.084 0.916 43 H 0.098 0.902 44 H 0.170 0.830 45 H 0.176 0.824 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.008 3.130 23.541 25.400 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C 0.044 3.956 3 H 0.087 0.913 4 C -0.174 4.174 5 C 0.069 3.931 6 H 0.065 0.935 7 N -0.364 5.364 8 C -0.370 4.370 9 H 0.089 0.911 10 C -0.210 4.210 11 N -0.580 5.580 12 Si 0.737 3.263 13 H -0.206 1.206 14 H -0.219 1.219 15 H -0.219 1.219 16 C -0.193 4.193 17 C -0.017 4.017 18 N -0.335 5.335 19 C 0.305 3.695 20 O -0.424 6.424 21 C -0.173 4.173 22 C -0.055 4.055 23 C -0.052 4.052 24 N -0.205 5.205 25 C -0.174 4.174 26 C -0.196 4.196 27 N -0.171 5.171 28 H 0.256 0.744 29 H 0.093 0.907 30 H 0.061 0.939 31 H 0.081 0.919 32 H 0.093 0.907 33 H 0.082 0.918 34 H 0.217 0.783 35 H 0.065 0.935 36 H 0.080 0.920 37 H 0.093 0.907 38 H 0.097 0.903 39 H 0.085 0.915 40 H 0.125 0.875 41 H 0.108 0.892 42 H 0.102 0.898 43 H 0.117 0.883 44 H 0.187 0.813 45 H 0.193 0.807 Dipole moment (debyes) X Y Z Total from point charges -9.194 2.913 22.707 24.670 hybrid contribution 0.697 0.434 0.530 0.977 sum -8.497 3.347 23.237 24.967 Atomic orbital electron populations 1.22182 0.92944 1.03424 1.00680 1.21299 0.95349 0.95086 0.83909 0.91286 1.22296 0.97575 1.00961 0.96546 1.20159 0.90910 0.94914 0.87137 0.93537 1.42438 1.12961 1.54220 1.26803 1.19271 0.89127 1.22081 1.06487 0.91141 1.24753 0.98150 0.99861 0.98224 1.69672 1.35290 1.33501 1.19549 0.86139 0.84532 0.77280 0.78360 1.20568 1.21886 1.21909 1.22678 1.01753 1.00113 0.94734 1.21886 0.79450 1.00537 0.99844 1.48231 1.07705 1.57380 1.20186 1.20487 0.85965 0.79742 0.83338 1.90718 1.17230 1.57277 1.77176 1.21620 0.98893 1.01704 0.95133 1.19696 0.97567 0.97817 0.90456 1.23370 1.01856 0.95450 0.84553 1.70270 1.15888 1.08996 1.25351 1.22401 1.05276 1.01572 0.88179 1.22754 1.05502 0.92536 0.98827 1.43331 1.44842 1.21571 1.07364 0.74404 0.90730 0.93884 0.91851 0.90690 0.91772 0.78255 0.93545 0.92037 0.90654 0.90259 0.91515 0.87466 0.89189 0.89788 0.88333 0.81306 0.80714 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.91 7.61 37.16 0.28 -1.62 16 2 C 0.15 2.10 3.49 -67.60 -0.24 1.87 16 3 H 0.07 0.95 8.14 -51.93 -0.42 0.52 16 4 C -0.13 -2.24 4.84 -26.61 -0.13 -2.37 16 5 C 0.18 3.41 2.73 -67.89 -0.19 3.23 16 6 H 0.05 0.90 8.08 -51.93 -0.42 0.48 16 7 N -0.72 -17.78 5.12 -53.39 -0.27 -18.06 16 8 C -0.24 -6.48 9.93 -15.06 -0.15 -6.63 16 9 H 0.07 1.85 7.83 -52.48 -0.41 1.44 16 10 C -0.01 -0.39 5.50 -17.43 -0.10 -0.49 16 11 N -0.93 -28.07 13.06 55.49 0.72 -27.34 16 12 Si 0.91 22.19 29.55 -169.99 -5.02 17.17 16 13 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 14 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 15 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16 16 C -0.15 -2.52 5.66 -26.61 -0.15 -2.67 16 17 C 0.11 1.35 6.35 -3.71 -0.02 1.33 16 18 N -0.60 -8.12 2.97 -165.22 -0.49 -8.61 16 19 C 0.52 6.74 7.50 -10.98 -0.08 6.66 16 20 O -0.54 -8.15 11.55 5.56 0.06 -8.09 16 21 C -0.13 -1.38 4.01 -27.88 -0.11 -1.50 16 22 C -0.02 -0.15 5.13 -27.88 -0.14 -0.29 16 23 C 0.21 2.15 7.43 -155.41 -1.15 0.99 16 24 N -0.49 -6.01 11.22 -10.82 -0.12 -6.13 16 25 C -0.03 -0.26 11.87 -17.81 -0.21 -0.47 16 26 C -0.06 -0.46 12.04 -16.56 -0.20 -0.66 16 27 N -0.57 -4.16 6.15 -10.23 -0.06 -4.22 16 28 H 0.42 1.72 8.96 -40.82 -0.37 1.35 16 29 H 0.07 1.08 6.54 -51.92 -0.34 0.74 16 30 H 0.04 0.56 8.14 -51.93 -0.42 0.14 16 31 H 0.06 0.98 6.96 -51.93 -0.36 0.62 16 32 H 0.07 1.27 8.14 -51.92 -0.42 0.85 16 33 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 34 H 0.38 10.18 7.80 -40.82 -0.32 9.86 16 35 H 0.25 7.43 8.31 -40.82 -0.34 7.09 16 36 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 37 H 0.07 1.34 8.14 -51.93 -0.42 0.91 16 38 H 0.08 0.86 5.93 -51.93 -0.31 0.55 16 39 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 40 H 0.11 1.22 7.93 -51.93 -0.41 0.81 16 41 H 0.09 0.81 7.71 -51.93 -0.40 0.41 16 42 H 0.08 0.68 8.10 -51.93 -0.42 0.26 16 43 H 0.10 1.04 8.10 -51.93 -0.42 0.62 16 44 H 0.17 1.30 8.06 -52.49 -0.42 0.88 16 45 H 0.18 0.67 8.06 -52.49 -0.42 0.25 16 LS Contribution 360.37 15.07 5.43 5.43 Total: -1.00 -33.33 360.37 -9.46 -42.79 By element: Atomic # 1 Polarization: 16.82 SS G_CDS: -7.12 Total: 9.70 kcal Atomic # 6 Polarization: -0.04 SS G_CDS: -2.59 Total: -2.63 kcal Atomic # 7 Polarization: -64.15 SS G_CDS: -0.22 Total: -64.37 kcal Atomic # 8 Polarization: -8.15 SS G_CDS: 0.06 Total: -8.09 kcal Atomic # 14 Polarization: 22.19 SS G_CDS: -5.02 Total: 17.17 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -33.33 -9.46 -42.79 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001044576310.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.359 kcal (2) G-P(sol) polarization free energy of solvation -33.332 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.027 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.459 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.790 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.568 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds