Wall clock time and date at job start Tue Mar 31 2020 04:17:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09000 * 109.58760 * 2 1 4 4 C 1.53193 * 109.58594 * 239.57034 * 2 1 3 5 5 C 1.53036 * 109.31703 * 185.57731 * 4 2 1 6 6 H 1.08997 * 109.44975 * 301.35575 * 5 4 2 7 7 N 1.46498 * 109.46364 * 181.38547 * 5 4 2 8 8 C 1.36934 * 119.99894 * 154.93160 * 7 5 4 9 9 H 1.08003 * 120.00140 * 0.02562 * 8 7 5 10 10 C 1.38815 * 119.99978 * 180.02562 * 8 7 5 11 11 N 1.31619 * 119.99769 * 0.02562 * 10 8 7 12 12 Si 1.86794 * 119.99976 * 180.02562 * 10 8 7 13 13 H 1.48497 * 109.47546 * 359.97438 * 12 10 8 14 14 H 1.48502 * 109.47347 * 119.99770 * 12 10 8 15 15 H 1.48507 * 109.47168 * 239.99673 * 12 10 8 16 16 C 1.53042 * 109.53724 * 61.36519 * 5 4 2 17 17 C 1.53195 * 109.31533 * 298.64134 * 16 5 4 18 18 N 1.46923 * 108.77743 * 54.62819 * 17 16 5 19 19 C 1.34779 * 120.63132 * 126.37340 * 18 17 16 20 20 O 1.21274 * 120.00016 * 174.21636 * 19 18 17 21 21 C 1.50707 * 119.99435 * 354.21408 * 19 18 17 22 22 C 1.53007 * 109.46507 * 180.02562 * 21 19 18 23 23 C 1.50697 * 109.46504 * 180.02562 * 22 21 19 24 24 N 1.30499 * 125.65370 * 304.68785 * 23 22 21 25 25 C 1.34127 * 109.25691 * 179.89542 * 24 23 22 26 26 C 1.34663 * 108.02143 * 0.37164 * 25 24 23 27 27 N 1.35051 * 125.64639 * 124.99978 * 23 22 21 28 28 H 0.96994 * 126.39861 * 359.94286 * 27 23 22 29 29 H 1.09008 * 109.46935 * 305.50052 * 1 2 3 30 30 H 1.08995 * 109.47648 * 65.50388 * 1 2 3 31 31 H 1.09003 * 109.47715 * 185.50551 * 1 2 3 32 32 H 1.09007 * 109.49463 * 65.62437 * 4 2 1 33 33 H 1.09000 * 109.49818 * 305.53584 * 4 2 1 34 34 H 0.96996 * 120.00135 * 334.93425 * 7 5 4 35 35 H 0.96997 * 120.00063 * 180.02562 * 11 10 8 36 36 H 1.09003 * 109.49284 * 58.58873 * 16 5 4 37 37 H 1.08995 * 109.50059 * 178.68408 * 16 5 4 38 38 H 1.08994 * 109.59116 * 174.42313 * 17 16 5 39 39 H 1.09001 * 109.58383 * 294.84486 * 17 16 5 40 40 H 1.09000 * 109.47251 * 299.99897 * 21 19 18 41 41 H 1.08998 * 109.47160 * 60.00126 * 21 19 18 42 42 H 1.09000 * 109.47203 * 299.99830 * 22 21 19 43 43 H 1.08998 * 109.47387 * 60.00169 * 22 21 19 44 44 H 1.07997 * 125.99007 * 180.18656 * 25 24 23 45 45 H 1.08001 * 126.59333 * 179.73897 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8954 1.0269 0.0000 4 6 2.0435 -0.7310 -1.2445 5 6 3.5674 -0.8495 -1.1692 6 1 4.0059 0.1459 -1.0995 7 7 4.0651 -1.5189 -2.3735 8 6 5.3491 -1.3013 -2.7967 9 1 5.9951 -0.6366 -2.2423 10 6 5.8205 -1.9351 -3.9382 11 7 5.0331 -2.7448 -4.6140 12 14 7.5723 -1.6389 -4.5150 13 1 8.2454 -0.6936 -3.5884 14 1 8.3120 -2.9264 -4.5328 15 1 7.5520 -1.0607 -5.8827 16 6 3.9569 -1.6657 0.0655 17 6 3.4650 -0.9454 1.3249 18 7 2.0225 -0.6981 1.1954 19 6 1.1673 -1.1042 2.1546 20 8 -0.0056 -0.8033 2.0883 21 6 1.6687 -1.9325 3.3095 22 6 0.5042 -2.2575 4.2473 23 6 1.0057 -3.0852 5.4025 24 7 1.6563 -4.2122 5.3049 25 6 1.9445 -4.6645 6.5343 26 6 1.4468 -3.7885 7.4278 27 7 0.8511 -2.7864 6.7104 28 1 0.4021 -2.0071 7.0736 29 1 -0.3633 0.5968 0.8367 30 1 -0.3634 0.4261 -0.9351 31 1 -0.3635 -1.0229 0.0986 32 1 1.7659 -0.1695 -2.1366 33 1 1.6028 -1.7269 -1.2892 34 1 3.4850 -2.1161 -2.8713 35 1 5.3626 -3.1880 -5.4115 36 1 3.4982 -2.6529 0.0085 37 1 5.0411 -1.7696 0.1058 38 1 3.6518 -1.5690 2.1991 39 1 3.9903 0.0037 1.4316 40 1 2.1001 -2.8594 2.9317 41 1 2.4293 -1.3733 3.8544 42 1 0.0724 -1.3308 4.6252 43 1 -0.2561 -2.8169 3.7022 44 1 2.4792 -5.5735 6.7669 45 1 1.5057 -3.8627 8.5036 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001044576310.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:17:07 Heat of formation + Delta-G solvation = 16.803437 kcal Electronic energy + Delta-G solvation = -25194.816731 eV Core-core repulsion = 21633.718643 eV Total energy + Delta-G solvation = -3561.098088 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 306.180 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -42.93050 -41.50284 -38.78447 -36.16571 -35.10971 -33.76852 -33.40640 -33.36563 -31.02246 -29.70899 -28.28028 -26.20488 -25.69300 -24.37674 -22.79941 -22.46427 -21.57924 -21.19852 -19.93640 -19.11216 -18.84408 -17.62369 -17.11654 -16.78265 -16.67266 -15.91060 -15.58833 -15.43406 -15.37417 -15.02527 -14.81336 -14.65385 -14.43152 -14.35985 -13.70226 -13.57234 -13.40767 -13.32053 -13.02668 -12.90181 -12.85949 -12.62835 -12.56177 -12.15608 -12.10229 -11.99474 -11.90429 -11.69293 -11.33677 -10.97956 -10.95134 -10.88957 -10.06813 -9.53569 -9.29979 -8.99722 -7.92290 -5.20996 1.14124 1.48806 1.49199 1.59124 1.66475 1.97595 2.21546 2.34074 2.57616 3.39565 3.41898 3.69555 3.76732 3.91692 4.00564 4.09206 4.12343 4.18142 4.27422 4.35294 4.39087 4.53105 4.60220 4.61944 4.65883 4.71703 4.74138 4.83248 4.88873 4.98811 5.02513 5.05507 5.09916 5.19703 5.21737 5.31417 5.44165 5.52131 5.56858 5.74261 5.85865 6.29541 6.51429 6.55349 7.19451 7.23998 7.35297 8.11351 8.34175 9.31718 Molecular weight = 306.18amu Principal moments of inertia in cm(-1) A = 0.017913 B = 0.002929 C = 0.002621 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1562.724868 B = 9557.600049 C =10682.193956 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C 0.151 3.849 3 H 0.084 0.916 4 C -0.124 4.124 5 C 0.174 3.826 6 H 0.049 0.951 7 N -0.739 5.739 8 C -0.232 4.232 9 H 0.080 0.920 10 C -0.080 4.080 11 N -0.973 5.973 12 Si 0.971 3.029 13 H -0.262 1.262 14 H -0.296 1.296 15 H -0.296 1.296 16 C -0.142 4.142 17 C 0.116 3.884 18 N -0.606 5.606 19 C 0.515 3.485 20 O -0.564 6.564 21 C -0.123 4.123 22 C -0.008 4.008 23 C 0.196 3.804 24 N -0.528 5.528 25 C -0.064 4.064 26 C -0.039 4.039 27 N -0.556 5.556 28 H 0.435 0.565 29 H 0.074 0.926 30 H 0.051 0.949 31 H 0.044 0.956 32 H 0.068 0.932 33 H 0.048 0.952 34 H 0.369 0.631 35 H 0.249 0.751 36 H 0.043 0.957 37 H 0.064 0.936 38 H 0.105 0.895 39 H 0.087 0.913 40 H 0.097 0.903 41 H 0.111 0.889 42 H 0.100 0.900 43 H 0.082 0.918 44 H 0.179 0.821 45 H 0.214 0.786 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.579 4.669 26.439 28.185 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C 0.048 3.952 3 H 0.102 0.898 4 C -0.163 4.163 5 C 0.065 3.935 6 H 0.067 0.933 7 N -0.378 5.378 8 C -0.364 4.364 9 H 0.098 0.902 10 C -0.272 4.272 11 N -0.624 5.624 12 Si 0.800 3.200 13 H -0.187 1.187 14 H -0.224 1.224 15 H -0.224 1.224 16 C -0.183 4.183 17 C -0.007 4.007 18 N -0.339 5.339 19 C 0.305 3.695 20 O -0.444 6.444 21 C -0.163 4.163 22 C -0.048 4.048 23 C -0.068 4.068 24 N -0.249 5.249 25 C -0.211 4.211 26 C -0.174 4.174 27 N -0.161 5.161 28 H 0.275 0.725 29 H 0.093 0.907 30 H 0.070 0.930 31 H 0.063 0.937 32 H 0.087 0.913 33 H 0.067 0.933 34 H 0.201 0.799 35 H 0.058 0.942 36 H 0.062 0.938 37 H 0.083 0.917 38 H 0.123 0.877 39 H 0.105 0.895 40 H 0.115 0.885 41 H 0.129 0.871 42 H 0.119 0.881 43 H 0.100 0.900 44 H 0.196 0.804 45 H 0.231 0.769 Dipole moment (debyes) X Y Z Total from point charges -8.776 4.500 25.673 27.503 hybrid contribution 0.491 -0.046 -0.277 0.566 sum -8.285 4.454 25.396 27.082 Atomic orbital electron populations 1.22047 0.92640 1.02277 1.01143 1.21222 0.95454 0.95436 0.83113 0.89774 1.22153 0.95819 1.00407 0.97899 1.20413 0.92265 0.94697 0.86094 0.93291 1.42683 1.12189 1.54399 1.28507 1.19670 0.90077 1.20754 1.05870 0.90238 1.25565 1.02060 1.00569 0.99011 1.69835 1.37141 1.35301 1.20139 0.85100 0.80118 0.77034 0.77698 1.18660 1.22390 1.22387 1.22460 1.00995 0.99261 0.95596 1.21867 0.78964 1.01453 0.98399 1.48281 1.08103 1.57455 1.20033 1.20905 0.85576 0.79344 0.83651 1.90712 1.18053 1.57903 1.77719 1.21553 0.99664 1.00796 0.94329 1.19592 0.96752 0.98244 0.90194 1.23277 1.02520 0.95358 0.85632 1.70185 1.17215 1.10327 1.27191 1.22776 1.07087 1.03099 0.88161 1.23314 1.02866 0.91012 1.00177 1.43310 1.44216 1.22046 1.06482 0.72466 0.90718 0.92995 0.93680 0.91295 0.93337 0.79927 0.94214 0.93782 0.91693 0.87725 0.89526 0.88494 0.87053 0.88117 0.90000 0.80411 0.76921 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.37 7.61 71.98 0.55 -2.83 16 2 C 0.15 4.12 3.49 44.97 0.16 4.28 16 3 H 0.08 2.10 8.14 -2.39 -0.02 2.08 16 4 C -0.12 -4.11 4.84 30.67 0.15 -3.96 16 5 C 0.17 6.56 2.73 45.02 0.12 6.68 16 6 H 0.05 1.84 8.08 -2.39 -0.02 1.82 16 7 N -0.74 -36.87 5.12 -322.82 -1.65 -38.52 16 8 C -0.23 -12.62 9.93 84.03 0.83 -11.79 16 9 H 0.08 4.10 7.83 -2.91 -0.02 4.08 16 10 C -0.08 -4.59 5.50 84.86 0.47 -4.13 16 11 N -0.97 -60.12 13.06 21.65 0.28 -59.83 16 12 Si 0.97 45.97 29.55 68.60 2.03 48.00 16 13 H -0.26 -11.49 7.11 99.48 0.71 -10.78 16 14 H -0.30 -14.14 7.11 99.48 0.71 -13.44 16 15 H -0.30 -14.13 7.11 99.48 0.71 -13.42 16 16 C -0.14 -4.64 5.66 30.67 0.17 -4.46 16 17 C 0.12 2.68 6.35 86.36 0.55 3.23 16 18 N -0.61 -15.25 2.97 -795.03 -2.36 -17.61 16 19 C 0.52 12.63 7.50 87.66 0.66 13.29 16 20 O -0.56 -16.18 11.55 -3.01 -0.03 -16.22 16 21 C -0.12 -2.34 4.01 29.85 0.12 -2.22 16 22 C -0.01 -0.15 5.13 29.85 0.15 0.01 16 23 C 0.20 3.69 7.43 138.13 1.03 4.72 16 24 N -0.53 -12.74 11.22 -188.14 -2.11 -14.85 16 25 C -0.06 -1.18 11.87 83.52 0.99 -0.19 16 26 C -0.04 -0.46 12.04 83.08 1.00 0.54 16 27 N -0.56 -6.67 6.15 -186.27 -1.15 -7.81 16 28 H 0.43 2.18 8.96 -92.71 -0.83 1.35 16 29 H 0.07 2.06 6.54 -2.38 -0.02 2.04 16 30 H 0.05 1.30 8.14 -2.39 -0.02 1.28 16 31 H 0.04 1.39 6.96 -2.39 -0.02 1.37 16 32 H 0.07 2.35 8.14 -2.38 -0.02 2.33 16 33 H 0.05 1.75 8.14 -2.39 -0.02 1.73 16 34 H 0.37 20.28 7.80 -92.71 -0.72 19.55 16 35 H 0.25 14.95 8.31 -92.71 -0.77 14.18 16 36 H 0.04 1.58 8.14 -2.39 -0.02 1.56 16 37 H 0.06 2.25 8.14 -2.39 -0.02 2.23 16 38 H 0.10 1.95 5.93 -2.39 -0.01 1.93 16 39 H 0.09 1.74 8.14 -2.39 -0.02 1.72 16 40 H 0.10 2.11 7.93 -2.39 -0.02 2.09 16 41 H 0.11 1.66 7.71 -2.39 -0.02 1.64 16 42 H 0.10 1.41 8.10 -2.39 -0.02 1.39 16 43 H 0.08 1.72 8.10 -2.39 -0.02 1.70 16 44 H 0.18 2.63 8.06 -2.91 -0.02 2.60 16 45 H 0.21 0.72 8.06 -2.91 -0.02 0.70 16 Total: -1.00 -73.35 360.37 1.40 -71.96 By element: Atomic # 1 Polarization: 32.30 SS G_CDS: -0.55 Total: 31.75 kcal Atomic # 6 Polarization: -3.79 SS G_CDS: 6.95 Total: 3.15 kcal Atomic # 7 Polarization: -131.65 SS G_CDS: -6.99 Total: -138.64 kcal Atomic # 8 Polarization: -16.18 SS G_CDS: -0.03 Total: -16.22 kcal Atomic # 14 Polarization: 45.97 SS G_CDS: 2.03 Total: 48.00 kcal Total: -73.35 1.40 -71.96 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001044576310.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.758 kcal (2) G-P(sol) polarization free energy of solvation -73.354 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.404 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.399 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.955 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.803 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds