Wall clock time and date at job start Tue Mar 31 2020 03:46:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.34672 * 126.58498 * 2 1 4 4 N 1.34129 * 108.01809 * 180.02562 * 3 2 1 5 5 C 1.30509 * 109.25564 * 359.72821 * 4 3 2 6 6 N 1.35042 * 108.69577 * 0.44032 * 5 4 3 7 7 C 1.46502 * 126.39258 * 179.82843 * 6 5 4 8 8 C 1.50695 * 109.46983 * 264.68762 * 7 6 5 9 9 O 1.21282 * 120.00269 * 0.02562 * 8 7 6 10 10 N 1.34774 * 120.00265 * 180.02562 * 8 7 6 11 11 C 1.46938 * 120.62642 * 354.20672 * 10 8 7 12 12 C 1.53190 * 108.76987 * 126.41405 * 11 10 8 13 13 C 1.53045 * 109.31453 * 54.64253 * 12 11 10 14 14 H 1.09000 * 109.46296 * 178.62559 * 13 12 11 15 15 N 1.46499 * 109.46328 * 58.64766 * 13 12 11 16 16 C 1.36936 * 119.99846 * 85.00341 * 15 13 12 17 17 H 1.08000 * 120.00000 * 359.97438 * 16 15 13 18 18 C 1.38814 * 119.99760 * 180.02562 * 16 15 13 19 19 N 1.31621 * 119.99563 * 180.02562 * 18 16 15 20 20 Si 1.86798 * 120.00196 * 0.02562 * 18 16 15 21 21 H 1.48505 * 109.47024 * 89.99721 * 20 18 16 22 22 H 1.48500 * 109.47260 * 209.99801 * 20 18 16 23 23 H 1.48497 * 109.47128 * 330.00268 * 20 18 16 24 24 C 1.53045 * 109.53205 * 298.62763 * 13 12 11 25 25 C 1.46922 * 120.63798 * 174.23361 * 10 8 7 26 26 H 1.09001 * 109.58768 * 113.64917 * 25 10 8 27 27 C 1.53005 * 109.58406 * 353.37580 * 25 10 8 28 28 H 1.09001 * 109.47547 * 269.95665 * 1 2 3 29 29 H 1.09000 * 109.48005 * 29.95831 * 1 2 3 30 30 H 1.09003 * 109.46737 * 149.96158 * 1 2 3 31 31 H 1.07997 * 125.99272 * 0.03496 * 3 2 1 32 32 H 1.07995 * 125.64836 * 180.29337 * 5 4 3 33 33 H 1.09006 * 109.46768 * 144.68765 * 7 6 5 34 34 H 1.08996 * 109.47308 * 24.69210 * 7 6 5 35 35 H 1.08993 * 109.58351 * 6.63065 * 11 10 8 36 36 H 1.08996 * 109.58803 * 246.19977 * 11 10 8 37 37 H 1.08995 * 109.50311 * 294.68324 * 12 11 10 38 38 H 1.09005 * 109.49801 * 174.58759 * 12 11 10 39 39 H 0.97002 * 119.99987 * 265.00800 * 15 13 12 40 40 H 0.97004 * 119.99728 * 180.02562 * 19 18 16 41 41 H 1.09005 * 109.49531 * 181.31603 * 24 13 12 42 42 H 1.08998 * 109.49943 * 301.41227 * 24 13 12 43 43 H 1.08998 * 109.47043 * 65.79057 * 27 25 10 44 44 H 1.09001 * 109.47063 * 185.79699 * 27 25 10 45 45 H 1.09003 * 109.46767 * 305.79413 * 27 25 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3096 1.0814 0.0000 4 7 3.5811 0.6543 -0.0006 5 6 3.5968 -0.6507 0.0049 6 7 2.3230 -1.0989 -0.0006 7 6 1.8945 -2.4999 -0.0009 8 6 1.6286 -2.9436 -1.4163 9 8 1.7823 -2.1663 -2.3345 10 7 1.2199 -4.2042 -1.6618 11 6 1.1505 -5.1933 -0.5774 12 6 -0.2548 -5.8026 -0.5552 13 6 -0.5850 -6.3642 -1.9400 14 1 -1.5749 -6.8201 -1.9205 15 7 0.4105 -7.3743 -2.3072 16 6 0.2576 -8.6695 -1.8900 17 1 -0.5966 -8.9463 -1.2900 18 6 1.2011 -9.6266 -2.2375 19 7 1.0539 -10.8717 -1.8369 20 14 2.6797 -9.1474 -3.2736 21 1 3.7936 -8.7312 -2.3840 22 1 3.1081 -10.3098 -4.0924 23 1 2.3130 -8.0201 -4.1680 24 6 -0.5659 -5.2317 -2.9693 25 6 0.8359 -4.6158 -3.0189 26 1 1.5477 -5.3518 -3.3928 27 6 0.8277 -3.3955 -3.9419 28 1 -0.3634 -0.0008 1.0276 29 1 -0.3635 0.8903 -0.5132 30 1 -0.3633 -0.8897 -0.5145 31 1 1.9863 2.1118 0.0005 32 1 4.4819 -1.2695 0.0104 33 1 0.9834 -2.6012 0.5890 34 1 2.6789 -3.1199 0.4330 35 1 1.3522 -4.7049 0.3759 36 1 1.8864 -5.9783 -0.7512 37 1 -0.9808 -5.0334 -0.2919 38 1 -0.2916 -6.6055 0.1811 39 1 1.1779 -7.1256 -2.8459 40 1 1.7134 -11.5404 -2.0794 41 1 -0.8240 -5.6282 -3.9513 42 1 -1.2890 -4.4678 -2.6833 43 1 1.8428 -3.0129 -4.0473 44 1 0.4442 -3.6831 -4.9209 45 1 0.1900 -2.6214 -3.5150 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001044687169.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:46:23 Heat of formation + Delta-G solvation = 60.680233 kcal Electronic energy + Delta-G solvation = -26392.487069 eV Core-core repulsion = 22833.291622 eV Total energy + Delta-G solvation = -3559.195447 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 306.180 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -42.26596 -40.51182 -37.79983 -34.51529 -34.43209 -32.70322 -32.08737 -32.00608 -29.86129 -28.10119 -27.07217 -26.54226 -24.44222 -23.24798 -22.40889 -21.53039 -20.73043 -19.74181 -18.61029 -17.87030 -17.36408 -17.03879 -16.06759 -15.60745 -15.18003 -14.83963 -14.49134 -14.33268 -14.02488 -13.85060 -13.70505 -13.55640 -13.40775 -13.13144 -12.91101 -12.78148 -12.54877 -12.53613 -12.39880 -12.15067 -11.82477 -11.48329 -11.17822 -11.03912 -10.94192 -10.64920 -10.38297 -10.21667 -10.04624 -9.95847 -9.69668 -9.10186 -9.02995 -8.51461 -8.36431 -7.42077 -5.89429 -3.26087 1.84301 2.37606 2.45687 2.99744 3.13443 3.25679 3.28440 3.36142 4.21117 4.37516 4.46477 4.54064 4.63615 4.68405 4.88508 4.97899 4.99180 5.05662 5.17472 5.29572 5.32209 5.33099 5.41576 5.45140 5.56913 5.62934 5.67404 5.71852 5.78509 5.87712 6.01128 6.13341 6.23249 6.24846 6.29353 6.44261 6.49214 6.55860 6.66093 6.76439 7.03354 7.35312 7.85832 7.98846 8.02286 8.29422 9.06820 9.79418 9.98351 11.28692 Molecular weight = 306.18amu Principal moments of inertia in cm(-1) A = 0.023070 B = 0.003742 C = 0.003656 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1213.382351 B = 7481.196614 C = 7657.512048 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 C -0.013 4.013 3 C -0.032 4.032 4 N -0.493 5.493 5 C 0.188 3.812 6 N -0.440 5.440 7 C 0.082 3.918 8 C 0.496 3.504 9 O -0.521 6.521 10 N -0.597 5.597 11 C 0.109 3.891 12 C -0.149 4.149 13 C 0.179 3.821 14 H 0.062 0.938 15 N -0.746 5.746 16 C -0.246 4.246 17 H 0.091 0.909 18 C 0.008 3.992 19 N -0.931 5.931 20 Si 0.879 3.121 21 H -0.284 1.284 22 H -0.290 1.290 23 H -0.278 1.278 24 C -0.136 4.136 25 C 0.145 3.855 26 H 0.073 0.927 27 C -0.136 4.136 28 H 0.071 0.929 29 H 0.081 0.919 30 H 0.062 0.938 31 H 0.166 0.834 32 H 0.202 0.798 33 H 0.118 0.882 34 H 0.123 0.877 35 H 0.071 0.929 36 H 0.085 0.915 37 H 0.053 0.947 38 H 0.081 0.919 39 H 0.360 0.640 40 H 0.260 0.740 41 H 0.077 0.923 42 H 0.066 0.934 43 H 0.075 0.925 44 H 0.045 0.955 45 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.818 18.256 4.702 18.939 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.127 4.127 3 C -0.179 4.179 4 N -0.211 5.211 5 C -0.094 4.094 6 N -0.123 5.123 7 C -0.045 4.045 8 C 0.281 3.719 9 O -0.397 6.397 10 N -0.331 5.331 11 C -0.014 4.014 12 C -0.190 4.190 13 C 0.069 3.931 14 H 0.080 0.920 15 N -0.390 5.390 16 C -0.376 4.376 17 H 0.109 0.891 18 C -0.188 4.188 19 N -0.578 5.578 20 Si 0.709 3.291 21 H -0.211 1.211 22 H -0.216 1.216 23 H -0.204 1.204 24 C -0.175 4.175 25 C 0.043 3.957 26 H 0.091 0.909 27 C -0.193 4.193 28 H 0.090 0.910 29 H 0.100 0.900 30 H 0.081 0.919 31 H 0.184 0.816 32 H 0.218 0.782 33 H 0.136 0.864 34 H 0.141 0.859 35 H 0.090 0.910 36 H 0.103 0.897 37 H 0.072 0.928 38 H 0.100 0.900 39 H 0.194 0.806 40 H 0.070 0.930 41 H 0.096 0.904 42 H 0.084 0.916 43 H 0.093 0.907 44 H 0.063 0.937 45 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -1.166 18.799 4.293 19.318 hybrid contribution 0.476 -0.691 -0.675 1.077 sum -0.690 18.108 3.617 18.479 Atomic orbital electron populations 1.20197 0.87461 1.03488 1.02295 1.21192 0.94476 0.86707 1.10354 1.21972 0.88443 0.98259 1.09255 1.70252 1.22442 1.08765 1.19600 1.24850 0.86969 0.91809 1.05747 1.44900 1.07415 1.05386 1.54607 1.21807 1.04413 0.81154 0.97095 1.20563 0.78293 0.82375 0.90665 1.90818 1.51204 1.53592 1.44098 1.48231 1.64690 1.09751 1.10393 1.21837 1.00190 0.91287 0.88037 1.22500 0.94739 1.00000 1.01793 1.20156 0.94051 0.88227 0.90625 0.92049 1.42879 1.26135 1.06469 1.63545 1.19055 1.07846 0.83229 1.27480 0.89092 1.24657 0.98504 0.95332 1.00303 1.69690 1.36898 1.01200 1.50037 0.86656 0.84104 0.77539 0.80792 1.21078 1.21579 1.20442 1.22295 0.95644 0.98315 1.01275 1.21287 0.96626 0.96972 0.80842 0.90881 1.22192 1.03916 0.96037 0.97166 0.91049 0.89994 0.91906 0.81625 0.78172 0.86363 0.85945 0.91031 0.89710 0.92816 0.89995 0.80618 0.92951 0.90445 0.91567 0.90662 0.93653 0.92035 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.65 10.08 36.00 0.36 -0.29 16 2 C -0.01 -0.15 6.95 -81.60 -0.57 -0.72 16 3 C -0.03 -0.40 11.79 -17.81 -0.21 -0.61 16 4 N -0.49 -7.00 11.25 -14.66 -0.16 -7.16 16 5 C 0.19 2.28 12.56 -90.37 -1.13 1.15 16 6 N -0.44 -4.99 2.24 -115.28 -0.26 -5.24 16 7 C 0.08 0.76 4.63 -5.20 -0.02 0.73 16 8 C 0.50 6.22 7.57 -10.99 -0.08 6.14 16 9 O -0.52 -8.18 12.00 5.56 0.07 -8.11 16 10 N -0.60 -7.67 2.97 -165.22 -0.49 -8.16 16 11 C 0.11 1.33 6.09 -3.71 -0.02 1.31 16 12 C -0.15 -2.02 5.78 -26.61 -0.15 -2.17 16 13 C 0.18 2.93 3.10 -67.88 -0.21 2.72 16 14 H 0.06 1.06 8.08 -51.93 -0.42 0.64 16 15 N -0.75 -15.50 4.11 -53.38 -0.22 -15.72 16 16 C -0.25 -6.31 10.41 -15.06 -0.16 -6.47 16 17 H 0.09 2.51 8.06 -52.49 -0.42 2.09 16 18 C 0.01 0.23 5.50 -17.43 -0.10 0.13 16 19 N -0.93 -27.79 13.97 55.49 0.78 -27.01 16 20 Si 0.88 20.92 27.74 -169.99 -4.71 16.21 16 21 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 22 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 23 H -0.28 -6.26 6.52 56.52 0.37 -5.90 16 24 C -0.14 -1.91 5.07 -26.61 -0.13 -2.05 16 25 C 0.15 2.08 3.19 -67.60 -0.22 1.87 16 26 H 0.07 1.19 6.65 -51.93 -0.35 0.84 16 27 C -0.14 -1.91 7.61 37.16 0.28 -1.62 16 28 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 29 H 0.08 0.61 8.14 -51.93 -0.42 0.18 16 30 H 0.06 0.57 7.96 -51.93 -0.41 0.16 16 31 H 0.17 1.68 8.06 -52.49 -0.42 1.25 16 32 H 0.20 1.81 8.06 -52.49 -0.42 1.38 16 33 H 0.12 0.85 7.81 -51.93 -0.41 0.45 16 34 H 0.12 0.84 7.70 -51.93 -0.40 0.45 16 35 H 0.07 0.62 5.93 -51.93 -0.31 0.32 16 36 H 0.08 1.25 7.74 -51.93 -0.40 0.85 16 37 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 38 H 0.08 1.22 8.14 -51.93 -0.42 0.80 16 39 H 0.36 7.54 3.93 -40.82 -0.16 7.38 16 40 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 41 H 0.08 1.11 8.14 -51.93 -0.42 0.69 16 42 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 43 H 0.07 1.18 6.54 -51.93 -0.34 0.84 16 44 H 0.04 0.58 8.14 -51.93 -0.42 0.16 16 45 H 0.06 0.89 6.96 -51.93 -0.36 0.53 16 LS Contribution 354.10 15.07 5.34 5.34 Total: -1.00 -32.88 354.10 -8.98 -41.86 By element: Atomic # 1 Polarization: 14.83 SS G_CDS: -6.95 Total: 7.88 kcal Atomic # 6 Polarization: 2.48 SS G_CDS: -2.36 Total: 0.12 kcal Atomic # 7 Polarization: -62.94 SS G_CDS: -0.36 Total: -63.30 kcal Atomic # 8 Polarization: -8.18 SS G_CDS: 0.07 Total: -8.11 kcal Atomic # 14 Polarization: 20.92 SS G_CDS: -4.71 Total: 16.21 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -32.88 -8.98 -41.86 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001044687169.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.540 kcal (2) G-P(sol) polarization free energy of solvation -32.876 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 69.664 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.984 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.860 kcal (6) G-S(sol) free energy of system = (1) + (5) 60.680 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds