Wall clock time and date at job start Tue Mar 31 2020 03:50:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 N 1.30857 * 125.41794 * 2 1 4 4 C 1.33316 * 109.68672 * 179.78489 * 3 2 1 5 5 C 1.36661 * 107.78542 * 0.37424 * 4 3 2 6 6 C 1.46764 * 126.84365 * 179.89261 * 5 4 3 7 7 O 1.21687 * 119.99870 * 152.30045 * 6 5 4 8 8 N 1.34772 * 120.00351 * 332.30249 * 6 5 4 9 9 C 1.46928 * 120.62796 * 351.36545 * 8 6 5 10 10 C 1.53198 * 108.76355 * 233.63885 * 9 8 6 11 11 C 1.53039 * 109.31157 * 305.34478 * 10 9 8 12 12 H 1.08999 * 109.46570 * 301.37301 * 11 10 9 13 13 N 1.46501 * 109.45960 * 181.40041 * 11 10 9 14 14 C 1.36931 * 120.00118 * 84.97128 * 13 11 10 15 15 H 1.08003 * 119.99968 * 359.97438 * 14 13 11 16 16 C 1.38811 * 120.00397 * 180.02562 * 14 13 11 17 17 N 1.31625 * 119.99927 * 0.02562 * 16 14 13 18 18 Si 1.86797 * 120.00304 * 180.02562 * 16 14 13 19 19 H 1.48495 * 109.47095 * 359.97438 * 18 16 14 20 20 H 1.48501 * 109.47255 * 239.99972 * 18 16 14 21 21 H 1.48502 * 109.46979 * 119.99895 * 18 16 14 22 22 C 1.53045 * 109.52599 * 61.38747 * 11 10 9 23 23 C 1.46928 * 120.63293 * 171.39131 * 8 6 5 24 24 H 1.09001 * 109.58246 * 6.57839 * 23 8 6 25 25 C 1.52997 * 109.70317 * 246.22930 * 23 8 6 26 26 N 1.34499 * 125.41864 * 180.02562 * 2 1 3 27 27 C 1.46497 * 126.47343 * 359.95856 * 26 2 1 28 28 H 1.09002 * 109.47480 * 269.97373 * 1 2 3 29 29 H 1.08998 * 109.47373 * 29.97887 * 1 2 3 30 30 H 1.09003 * 109.47205 * 149.97756 * 1 2 3 31 31 H 1.08000 * 126.10917 * 180.27796 * 4 3 2 32 32 H 1.08992 * 109.58667 * 353.41701 * 9 8 6 33 33 H 1.08996 * 109.58473 * 113.70311 * 9 8 6 34 34 H 1.09000 * 109.48192 * 185.39886 * 10 9 8 35 35 H 1.08998 * 109.50673 * 65.30316 * 10 9 8 36 36 H 0.97003 * 119.99863 * 264.98019 * 13 11 10 37 37 H 0.97002 * 119.99709 * 359.97438 * 17 16 14 38 38 H 1.09003 * 109.49700 * 58.57987 * 22 11 10 39 39 H 1.09002 * 109.49514 * 178.67186 * 22 11 10 40 40 H 1.09008 * 109.46746 * 300.63218 * 25 23 8 41 41 H 1.08997 * 109.47543 * 60.63575 * 25 23 8 42 42 H 1.09003 * 109.47321 * 180.63931 * 25 23 8 43 43 H 1.08998 * 109.47099 * 264.50057 * 27 26 2 44 44 H 1.09000 * 109.47211 * 24.50092 * 27 26 2 45 45 H 1.08997 * 109.46747 * 144.49574 * 27 26 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2654 1.0664 0.0000 4 6 3.5486 0.7050 0.0047 5 6 3.5976 -0.6608 -0.0007 6 6 4.8029 -1.4981 -0.0005 7 8 4.7688 -2.6135 0.4848 8 7 5.9476 -1.0318 -0.5377 9 6 5.9611 0.2288 -1.2925 10 6 6.5869 -0.0268 -2.6673 11 6 7.9659 -0.6648 -2.4850 12 1 8.5969 -0.0027 -1.8920 13 7 8.5815 -0.8799 -3.7969 14 6 9.2749 0.1338 -4.4024 15 1 9.3676 1.0921 -3.9129 16 6 9.8576 -0.0698 -5.6456 17 7 9.7433 -1.2372 -6.2428 18 14 10.8042 1.3129 -6.4713 19 1 10.7853 2.5150 -5.5996 20 1 10.1706 1.6372 -7.7746 21 1 12.2086 0.8859 -6.6962 22 6 7.8174 -2.0072 -1.7652 23 6 7.2055 -1.7745 -0.3802 24 1 7.0060 -2.7339 0.0971 25 6 8.1777 -0.9657 0.4808 26 7 2.2865 -1.0961 -0.0005 27 6 1.8312 -2.4885 -0.0003 28 1 -0.3634 -0.0005 1.0277 29 1 -0.3634 0.8901 -0.5135 30 1 -0.3634 -0.8898 -0.5142 31 1 4.3978 1.3722 0.0101 32 1 4.9407 0.5910 -1.4171 33 1 6.5491 0.9713 -0.7531 34 1 6.6907 0.9181 -3.2007 35 1 5.9475 -0.6994 -3.2389 36 1 8.4977 -1.7404 -4.2367 37 1 9.2521 -1.9553 -5.8139 38 1 7.1663 -2.6610 -2.3454 39 1 8.7973 -2.4721 -1.6566 40 1 8.3720 -0.0047 0.0043 41 1 7.7406 -0.8012 1.4656 42 1 9.1135 -1.5148 0.5858 43 1 1.8124 -2.8645 1.0227 44 1 0.8292 -2.5432 -0.4258 45 1 2.5131 -3.0938 -0.5975 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001044721949.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:50:33 Heat of formation + Delta-G solvation = 43.709170 kcal Electronic energy + Delta-G solvation = -26020.668548 eV Core-core repulsion = 22460.737180 eV Total energy + Delta-G solvation = -3559.931368 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 306.180 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -42.52133 -40.04457 -37.63238 -34.95689 -34.27461 -33.05447 -31.98695 -31.66192 -29.25971 -27.90360 -27.29947 -27.03635 -24.28141 -23.32808 -22.77112 -21.69587 -20.84177 -19.84314 -18.60450 -17.35935 -17.23485 -16.77592 -16.34822 -15.81669 -15.11377 -14.79771 -14.34846 -14.12568 -14.00728 -13.69348 -13.65651 -13.60246 -13.48143 -13.19281 -13.01490 -12.86823 -12.67665 -12.60327 -12.53364 -11.89259 -11.63222 -11.30891 -10.95356 -10.83614 -10.57261 -10.54948 -10.39424 -10.06838 -9.92869 -9.90047 -9.83538 -9.18335 -8.92755 -8.70618 -8.47344 -7.05916 -6.11965 -3.12317 1.19730 2.20494 2.61876 3.05634 3.17007 3.50610 3.57065 3.66205 4.09705 4.31875 4.46002 4.64094 4.67364 4.86501 4.96668 5.02350 5.10398 5.13943 5.15753 5.21875 5.25311 5.27769 5.40448 5.49680 5.55351 5.59802 5.67039 5.72748 5.80673 5.91472 5.97289 6.09039 6.19072 6.26652 6.30928 6.36401 6.41590 6.55485 6.80891 6.81406 6.95614 7.37795 7.71021 7.79488 8.07356 8.73754 9.20455 10.06948 10.21992 11.36446 Molecular weight = 306.18amu Principal moments of inertia in cm(-1) A = 0.019857 B = 0.003441 C = 0.003208 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1409.740091 B = 8136.225566 C = 8727.371222 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 C 0.222 3.778 3 N -0.493 5.493 4 C 0.034 3.966 5 C -0.080 4.080 6 C 0.594 3.406 7 O -0.552 6.552 8 N -0.586 5.586 9 C 0.090 3.910 10 C -0.149 4.149 11 C 0.184 3.816 12 H 0.054 0.946 13 N -0.736 5.736 14 C -0.331 4.331 15 H 0.066 0.934 16 C -0.045 4.045 17 N -0.945 5.945 18 Si 1.084 2.916 19 H -0.294 1.294 20 H -0.293 1.293 21 H -0.293 1.293 22 C -0.134 4.134 23 C 0.145 3.855 24 H 0.097 0.903 25 C -0.162 4.162 26 N -0.426 5.426 27 C 0.073 3.927 28 H 0.084 0.916 29 H 0.094 0.906 30 H 0.075 0.925 31 H 0.185 0.815 32 H 0.092 0.908 33 H 0.071 0.929 34 H 0.077 0.923 35 H 0.056 0.944 36 H 0.366 0.634 37 H 0.255 0.745 38 H 0.061 0.939 39 H 0.076 0.924 40 H 0.066 0.934 41 H 0.054 0.946 42 H 0.070 0.930 43 H 0.083 0.917 44 H 0.088 0.912 45 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.364 0.344 15.300 22.405 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.040 4.040 3 N -0.212 5.212 4 C -0.119 4.119 5 C -0.197 4.197 6 C 0.382 3.618 7 O -0.431 6.431 8 N -0.318 5.318 9 C -0.032 4.032 10 C -0.190 4.190 11 C 0.074 3.926 12 H 0.072 0.928 13 N -0.377 5.377 14 C -0.462 4.462 15 H 0.084 0.916 16 C -0.243 4.243 17 N -0.590 5.590 18 Si 0.915 3.085 19 H -0.221 1.221 20 H -0.221 1.221 21 H -0.220 1.220 22 C -0.173 4.173 23 C 0.042 3.958 24 H 0.115 0.885 25 C -0.220 4.220 26 N -0.108 5.108 27 C -0.069 4.069 28 H 0.102 0.898 29 H 0.113 0.887 30 H 0.094 0.906 31 H 0.202 0.798 32 H 0.110 0.890 33 H 0.090 0.910 34 H 0.096 0.904 35 H 0.075 0.925 36 H 0.199 0.801 37 H 0.067 0.933 38 H 0.080 0.920 39 H 0.095 0.905 40 H 0.085 0.915 41 H 0.073 0.927 42 H 0.089 0.911 43 H 0.102 0.898 44 H 0.107 0.893 45 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -15.786 1.006 14.273 21.305 hybrid contribution -0.577 -1.450 1.135 1.930 sum -16.363 -0.444 15.408 22.480 Atomic orbital electron populations 1.20266 0.84422 1.04354 1.03798 1.23419 0.95889 0.81150 1.03527 1.70122 1.02130 1.28021 1.20923 1.22850 0.95113 0.91354 1.02620 1.20779 0.85118 0.95150 1.18623 1.16795 0.81859 0.84937 0.78231 1.90779 1.84811 1.19612 1.47942 1.47899 1.07435 1.24535 1.51908 1.22356 1.02715 0.84930 0.93239 1.22642 0.99416 1.02645 0.94270 1.20148 0.91527 0.93281 0.87668 0.92845 1.42456 1.63564 1.13836 1.17885 1.20089 1.29439 0.93551 1.03081 0.91633 1.25760 1.01306 1.02465 0.94753 1.70819 1.44497 1.03104 1.40602 0.83163 0.76107 0.73715 0.75466 1.22078 1.22054 1.22042 1.22229 1.00966 0.99554 0.94551 1.21212 0.82138 0.95815 0.96614 0.88538 1.22160 0.99088 1.01473 0.99229 1.45068 1.05185 1.08257 1.52255 1.22144 1.01458 0.78720 1.04553 0.89790 0.88721 0.90615 0.79836 0.88984 0.91039 0.90429 0.92504 0.80100 0.93321 0.92010 0.90506 0.91465 0.92713 0.91116 0.89798 0.89297 0.89032 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.45 10.17 36.01 0.37 -0.08 16 2 C 0.22 2.48 7.88 -155.61 -1.23 1.26 16 3 N -0.49 -6.60 11.20 -10.58 -0.12 -6.72 16 4 C 0.03 0.45 9.48 -17.48 -0.17 0.28 16 5 C -0.08 -1.10 6.35 -82.14 -0.52 -1.62 16 6 C 0.59 9.00 7.48 -12.82 -0.10 8.91 16 7 O -0.55 -9.50 15.32 5.20 0.08 -9.42 16 8 N -0.59 -8.37 2.68 -166.72 -0.45 -8.81 16 9 C 0.09 1.22 4.72 -3.71 -0.02 1.21 16 10 C -0.15 -2.55 5.66 -26.61 -0.15 -2.70 16 11 C 0.18 3.49 2.53 -67.89 -0.17 3.32 16 12 H 0.05 1.03 6.45 -51.93 -0.33 0.70 16 13 N -0.74 -17.93 5.12 -53.38 -0.27 -18.20 16 14 C -0.33 -9.05 9.93 -15.06 -0.15 -9.20 16 15 H 0.07 1.76 7.83 -52.48 -0.41 1.35 16 16 C -0.05 -1.30 5.50 -17.43 -0.10 -1.39 16 17 N -0.94 -29.04 13.70 55.49 0.76 -28.28 16 18 Si 1.08 25.76 29.92 -169.99 -5.09 20.68 16 19 H -0.29 -6.54 7.11 56.52 0.40 -6.13 16 20 H -0.29 -6.96 7.11 56.52 0.40 -6.55 16 21 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 22 C -0.13 -2.20 5.02 -26.61 -0.13 -2.34 16 23 C 0.15 2.08 3.21 -67.60 -0.22 1.86 16 24 H 0.10 1.44 7.00 -51.93 -0.36 1.07 16 25 C -0.16 -2.01 9.03 37.16 0.34 -1.67 16 26 N -0.43 -5.04 3.17 -117.28 -0.37 -5.42 16 27 C 0.07 0.64 10.28 59.85 0.62 1.25 16 28 H 0.08 0.43 8.14 -51.93 -0.42 0.01 16 29 H 0.09 0.57 8.14 -51.93 -0.42 0.15 16 30 H 0.08 0.33 6.95 -51.93 -0.36 -0.03 16 31 H 0.18 2.04 6.39 -52.49 -0.34 1.71 16 32 H 0.09 1.18 4.35 -51.93 -0.23 0.95 16 33 H 0.07 0.86 7.50 -51.93 -0.39 0.47 16 34 H 0.08 1.42 8.14 -51.93 -0.42 1.00 16 35 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 36 H 0.37 9.36 6.63 -40.82 -0.27 9.08 16 37 H 0.26 7.75 6.77 -40.82 -0.28 7.47 16 38 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 39 H 0.08 1.26 8.14 -51.93 -0.42 0.84 16 40 H 0.07 0.86 5.75 -51.92 -0.30 0.56 16 41 H 0.05 0.64 8.14 -51.93 -0.42 0.21 16 42 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 43 H 0.08 0.68 8.14 -51.93 -0.42 0.25 16 44 H 0.09 0.47 6.86 -51.93 -0.36 0.12 16 45 H 0.09 0.93 7.60 -51.93 -0.39 0.53 16 LS Contribution 353.01 15.07 5.32 5.32 Total: -1.00 -34.49 353.01 -8.38 -42.87 By element: Atomic # 1 Polarization: 15.53 SS G_CDS: -6.62 Total: 8.91 kcal Atomic # 6 Polarization: 0.70 SS G_CDS: -1.63 Total: -0.93 kcal Atomic # 7 Polarization: -66.98 SS G_CDS: -0.45 Total: -67.43 kcal Atomic # 8 Polarization: -9.50 SS G_CDS: 0.08 Total: -9.42 kcal Atomic # 14 Polarization: 25.76 SS G_CDS: -5.09 Total: 20.68 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -34.49 -8.38 -42.87 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001044721949.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.579 kcal (2) G-P(sol) polarization free energy of solvation -34.487 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.092 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.383 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.869 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.709 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds