Wall clock time and date at job start Tue Mar 31 2020 03:44:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50692 * 1 3 3 N 1.30838 * 125.90229 * 2 1 4 4 N 1.40090 * 108.20718 * 179.85358 * 3 2 1 5 5 H 0.96995 * 126.03325 * 180.16721 * 4 3 2 6 6 C 1.34941 * 107.92378 * 0.41504 * 4 3 2 7 7 C 1.50699 * 126.12548 * 179.79214 * 6 4 3 8 8 C 1.35315 * 107.74776 * 359.75221 * 6 4 3 9 9 C 1.50705 * 126.04204 * 180.02562 * 8 6 4 10 10 C 1.50697 * 109.47213 * 270.00793 * 9 8 6 11 11 O 1.21279 * 120.00478 * 359.97438 * 10 9 8 12 12 N 1.34780 * 120.00122 * 179.97438 * 10 9 8 13 13 C 1.46494 * 120.00289 * 180.02562 * 12 10 9 14 14 H 1.08994 * 110.89012 * 31.11666 * 13 12 10 15 15 C 1.54917 * 111.00402 * 267.19313 * 13 12 10 16 16 N 1.47416 * 104.83397 * 204.91687 * 15 13 12 17 17 C 1.36939 * 125.64807 * 204.08313 * 16 15 13 18 18 H 1.08001 * 119.99577 * 169.99371 * 17 16 15 19 19 C 1.38806 * 120.00023 * 349.99680 * 17 16 15 20 20 N 1.31626 * 120.00108 * 350.41618 * 19 17 16 21 21 Si 1.86800 * 120.00065 * 170.42249 * 19 17 16 22 22 H 1.48501 * 109.47338 * 94.13822 * 21 19 17 23 23 H 1.48501 * 109.46931 * 214.14083 * 21 19 17 24 24 H 1.48499 * 109.46964 * 334.13607 * 21 19 17 25 25 C 1.47028 * 108.70438 * 24.12912 * 16 15 13 26 26 C 1.54319 * 107.26863 * 358.93821 * 25 16 15 27 27 H 1.09004 * 110.71853 * 96.17283 * 26 25 16 28 28 C 1.53000 * 110.87323 * 219.36998 * 26 25 16 29 29 H 1.08995 * 109.47133 * 269.69074 * 1 2 3 30 30 H 1.09007 * 109.47360 * 29.69514 * 1 2 3 31 31 H 1.09004 * 109.47230 * 149.69154 * 1 2 3 32 32 H 1.08999 * 109.47115 * 269.95653 * 7 6 4 33 33 H 1.09001 * 109.47401 * 29.95536 * 7 6 4 34 34 H 1.09004 * 109.47179 * 149.95863 * 7 6 4 35 35 H 1.09004 * 109.46478 * 30.00540 * 9 8 6 36 36 H 1.08999 * 109.47043 * 150.00348 * 9 8 6 37 37 H 0.97001 * 119.99530 * 359.97438 * 12 10 9 38 38 H 1.08995 * 110.36280 * 323.75909 * 15 13 12 39 39 H 1.08997 * 110.36352 * 86.07444 * 15 13 12 40 40 H 0.96999 * 119.99727 * 179.97438 * 20 19 17 41 41 H 1.09002 * 109.87834 * 239.52658 * 25 16 15 42 42 H 1.08998 * 109.88215 * 118.35799 * 25 16 15 43 43 H 1.09007 * 109.46992 * 173.61087 * 28 26 25 44 44 H 1.08993 * 109.47760 * 293.61309 * 28 26 25 45 45 H 1.09008 * 109.46879 * 53.61846 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.2742 1.0598 0.0000 4 7 3.6088 0.6340 0.0034 5 1 4.3908 1.2078 0.0064 6 6 3.6142 -0.7154 -0.0039 7 6 4.8350 -1.5989 -0.0078 8 6 2.3271 -1.1330 -0.0060 9 6 1.8598 -2.5658 -0.0132 10 6 1.7043 -3.0363 -1.4363 11 8 1.9484 -2.2825 -2.3545 12 7 1.2940 -4.2951 -1.6889 13 6 1.1434 -4.7528 -3.0723 14 1 1.8585 -4.2543 -3.7266 15 6 -0.3079 -4.5424 -3.5720 16 7 -0.4862 -5.5386 -4.6438 17 6 -1.3859 -5.4518 -5.6725 18 1 -1.3329 -6.1481 -6.4963 19 6 -2.3658 -4.4689 -5.6563 20 7 -2.5526 -3.7434 -4.5740 21 14 -3.4197 -4.1756 -7.1705 22 1 -4.6770 -4.9578 -7.0577 23 1 -3.7436 -2.7302 -7.2758 24 1 -2.6762 -4.6057 -8.3819 25 6 0.4612 -6.6414 -4.4248 26 6 1.2846 -6.2950 -3.1665 27 1 0.8615 -6.7756 -2.2844 28 6 2.7505 -6.6943 -3.3472 29 1 -0.3633 -0.0055 1.0276 30 1 -0.3634 0.8927 -0.5091 31 1 -0.3634 -0.8872 -0.5186 32 1 5.1295 -1.8070 -1.0364 33 1 5.6511 -1.0935 0.5085 34 1 4.6074 -2.5354 0.5015 35 1 2.5932 -3.1896 0.4977 36 1 0.9010 -2.6377 0.5001 37 1 1.0991 -4.8981 -0.9546 38 1 -1.0170 -4.7231 -2.7642 39 1 -0.4305 -3.5340 -3.9670 40 1 -3.2371 -3.0563 -4.5629 41 1 1.1228 -6.7381 -5.2857 42 1 -0.0835 -7.5722 -4.2668 43 1 3.3315 -6.3388 -2.4962 44 1 2.8263 -7.7798 -3.4108 45 1 3.1382 -6.2487 -4.2634 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001080928310.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:44:27 Heat of formation + Delta-G solvation = 48.473417 kcal Electronic energy + Delta-G solvation = -25732.526339 eV Core-core repulsion = 22172.801564 eV Total energy + Delta-G solvation = -3559.724774 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 306.180 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.36195 -39.28777 -37.43166 -33.80201 -33.40360 -32.95180 -32.49239 -30.35906 -29.41129 -27.85593 -27.37752 -25.97274 -25.53681 -23.47495 -20.94399 -20.13231 -20.02267 -19.68347 -18.97989 -17.30923 -16.83575 -16.67176 -15.73172 -15.00586 -14.92626 -14.72097 -13.94414 -13.79663 -13.63183 -13.42042 -13.32402 -13.02503 -12.84201 -12.81238 -12.48746 -12.39283 -12.36170 -12.18551 -11.93633 -11.66273 -11.58793 -11.30127 -10.95733 -10.76017 -10.58057 -10.45450 -10.34374 -9.93786 -9.85117 -9.70977 -9.41023 -9.15708 -8.55340 -8.35788 -8.31349 -6.76236 -5.69480 -3.03090 1.88778 2.71521 2.87662 3.11811 3.43445 3.49396 3.51760 3.74912 4.54323 4.58429 4.69631 4.91168 5.07955 5.16177 5.21905 5.27374 5.33278 5.41007 5.47247 5.50780 5.57159 5.62282 5.71583 5.73161 5.79436 5.97981 6.04086 6.06989 6.07944 6.17489 6.18713 6.26968 6.40078 6.51188 6.70635 6.73231 6.87424 7.02347 7.31140 7.51615 7.64050 7.75354 7.85038 8.02142 8.30781 8.74569 9.23283 9.85639 10.51851 11.42912 Molecular weight = 306.18amu Principal moments of inertia in cm(-1) A = 0.014795 B = 0.004001 C = 0.003336 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1892.119911 B = 6996.282569 C = 8391.348326 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 C 0.099 3.901 3 N -0.300 5.300 4 N -0.479 5.479 5 H 0.435 0.565 6 C 0.098 3.902 7 C -0.093 4.093 8 C -0.212 4.212 9 C -0.061 4.061 10 C 0.509 3.491 11 O -0.530 6.530 12 N -0.717 5.717 13 C 0.119 3.881 14 H 0.090 0.910 15 C 0.171 3.829 16 N -0.602 5.602 17 C -0.233 4.233 18 H 0.076 0.924 19 C -0.005 4.005 20 N -0.915 5.915 21 Si 0.910 3.090 22 H -0.289 1.289 23 H -0.290 1.290 24 H -0.280 1.280 25 C 0.141 3.859 26 C -0.111 4.111 27 H 0.074 0.926 28 C -0.136 4.136 29 H 0.076 0.924 30 H 0.073 0.927 31 H 0.081 0.919 32 H 0.082 0.918 33 H 0.068 0.932 34 H 0.084 0.916 35 H 0.093 0.907 36 H 0.099 0.901 37 H 0.394 0.606 38 H 0.028 0.972 39 H 0.072 0.928 40 H 0.253 0.747 41 H 0.026 0.974 42 H 0.023 0.977 43 H 0.050 0.950 44 H 0.052 0.948 45 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.849 0.713 14.296 19.917 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.068 4.068 3 N -0.123 5.123 4 N -0.187 5.187 5 H 0.278 0.722 6 C -0.031 4.031 7 C -0.151 4.151 8 C -0.224 4.224 9 C -0.102 4.102 10 C 0.295 3.705 11 O -0.405 6.405 12 N -0.368 5.368 13 C 0.014 3.986 14 H 0.108 0.892 15 C 0.044 3.956 16 N -0.329 5.329 17 C -0.361 4.361 18 H 0.094 0.906 19 C -0.202 4.202 20 N -0.561 5.561 21 Si 0.740 3.260 22 H -0.216 1.216 23 H -0.216 1.216 24 H -0.206 1.206 25 C 0.015 3.985 26 C -0.130 4.130 27 H 0.092 0.908 28 C -0.194 4.194 29 H 0.094 0.906 30 H 0.092 0.908 31 H 0.100 0.900 32 H 0.101 0.899 33 H 0.087 0.913 34 H 0.103 0.897 35 H 0.111 0.889 36 H 0.117 0.883 37 H 0.227 0.773 38 H 0.045 0.955 39 H 0.090 0.910 40 H 0.063 0.937 41 H 0.044 0.956 42 H 0.041 0.959 43 H 0.069 0.931 44 H 0.071 0.929 45 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 13.867 2.668 13.546 19.568 hybrid contribution -0.342 -0.693 -0.458 0.898 sum 13.525 1.975 13.089 18.925 Atomic orbital electron populations 1.20227 0.86648 1.04144 1.02602 1.22181 0.96933 0.90048 0.97617 1.77259 0.86347 1.22293 1.26446 1.46030 1.07306 1.04663 1.60718 0.72177 1.20745 0.96747 0.84991 1.00579 1.20461 0.92783 0.98200 1.03669 1.19032 0.91264 0.94829 1.17267 1.19917 1.03241 0.92376 0.94691 1.20583 0.76994 0.81689 0.91263 1.90717 1.49418 1.53818 1.46541 1.45897 1.68757 1.13389 1.08757 1.22606 1.01333 0.92935 0.81767 0.89204 1.21669 0.88285 0.95197 0.90420 1.44364 1.40886 1.18474 1.29152 1.19000 1.05958 1.13927 0.97198 0.90576 1.24823 0.98265 0.99622 0.97462 1.69956 1.35092 1.24959 1.26101 0.86150 0.80189 0.77306 0.82380 1.21627 1.21591 1.20583 1.21341 0.91500 0.92122 0.93563 1.22408 0.95599 0.95545 0.99469 0.90785 1.21729 0.95517 1.00665 1.01464 0.90573 0.90773 0.89973 0.89892 0.91284 0.89719 0.88901 0.88281 0.77293 0.95451 0.90986 0.93700 0.95602 0.95896 0.93131 0.92931 0.92597 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.01 10.12 36.00 0.36 -0.64 16 2 C 0.10 1.48 7.22 -82.41 -0.59 0.89 16 3 N -0.30 -4.58 12.70 33.67 0.43 -4.16 16 4 N -0.48 -5.84 7.36 33.47 0.25 -5.60 16 5 H 0.43 3.76 8.96 -182.61 -1.64 2.12 16 6 C 0.10 1.17 7.21 -82.27 -0.59 0.58 16 7 C -0.09 -0.75 10.22 36.01 0.37 -0.38 16 8 C -0.21 -2.90 4.59 -105.05 -0.48 -3.38 16 9 C -0.06 -0.71 5.64 -29.03 -0.16 -0.87 16 10 C 0.51 8.14 7.82 -10.99 -0.09 8.05 16 11 O -0.53 -11.15 15.67 5.56 0.09 -11.06 16 12 N -0.72 -10.82 5.20 -51.73 -0.27 -11.09 16 13 C 0.12 2.26 2.87 -65.78 -0.19 2.07 16 14 H 0.09 1.91 7.45 -51.93 -0.39 1.52 16 15 C 0.17 4.20 5.11 -2.53 -0.01 4.19 16 16 N -0.60 -15.63 3.39 -170.08 -0.58 -16.21 16 17 C -0.23 -6.62 10.24 -15.06 -0.15 -6.77 16 18 H 0.08 2.09 7.85 -52.49 -0.41 1.68 16 19 C 0.00 -0.14 5.40 -17.43 -0.09 -0.23 16 20 N -0.91 -27.49 10.68 55.49 0.59 -26.90 16 21 Si 0.91 22.57 29.56 -169.99 -5.03 17.54 16 22 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 23 H -0.29 -7.28 7.11 56.52 0.40 -6.87 16 24 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 25 C 0.14 2.91 6.84 -3.06 -0.02 2.89 16 26 C -0.11 -1.82 3.18 -88.79 -0.28 -2.10 16 27 H 0.07 1.11 8.00 -51.93 -0.42 0.69 16 28 C -0.14 -1.81 9.17 37.16 0.34 -1.46 16 29 H 0.08 0.79 8.14 -51.93 -0.42 0.37 16 30 H 0.07 0.96 8.14 -51.92 -0.42 0.54 16 31 H 0.08 1.14 7.92 -51.93 -0.41 0.72 16 32 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 33 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 34 H 0.08 0.57 7.15 -51.93 -0.37 0.19 16 35 H 0.09 0.78 7.15 -51.93 -0.37 0.40 16 36 H 0.10 0.99 7.92 -51.93 -0.41 0.58 16 37 H 0.39 4.58 8.57 -40.82 -0.35 4.23 16 38 H 0.03 0.72 8.07 -51.93 -0.42 0.30 16 39 H 0.07 2.09 6.94 -51.93 -0.36 1.73 16 40 H 0.25 7.39 8.31 -40.82 -0.34 7.05 16 41 H 0.03 0.53 7.78 -51.93 -0.40 0.12 16 42 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 43 H 0.05 0.59 8.14 -51.92 -0.42 0.17 16 44 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 45 H 0.05 0.79 8.07 -51.92 -0.42 0.37 16 LS Contribution 368.64 15.07 5.56 5.56 Total: -1.00 -36.69 368.64 -9.03 -45.71 By element: Atomic # 1 Polarization: 11.84 SS G_CDS: -8.46 Total: 3.38 kcal Atomic # 6 Polarization: 4.42 SS G_CDS: -1.60 Total: 2.82 kcal Atomic # 7 Polarization: -64.37 SS G_CDS: 0.42 Total: -63.95 kcal Atomic # 8 Polarization: -11.15 SS G_CDS: 0.09 Total: -11.06 kcal Atomic # 14 Polarization: 22.57 SS G_CDS: -5.03 Total: 17.54 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -36.69 -9.03 -45.71 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001080928310.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.187 kcal (2) G-P(sol) polarization free energy of solvation -36.689 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 57.498 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.025 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.714 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.473 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds